ENSG00000172915:+:13:35040932:35045401

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000172915:+:13:35040932:35045401 ENSG00000172915 ENST00000379939 + 13 35040933 35045401 429 CUGGUUGGUGGAGAAUUUGACUUGGAGAUGAACUUUAUUAUCCAGGAUGCUGAGAGUAUAACAUGUAUGACAGAGCUUUUGGAGCACUGUGAUGUAACAUGUCAAGCAGAAAUAUGGAGCAUGUUUACAGCCAUUCUACGAAAAAGUGUUCGGAAUUUACAGACUAGCACAGAAGUUGGGCUAAUUGAACAAGUAUUGCUGAAAAUGAGUGCUGUAGAUGACAUGAUAGCAGAUCUUCUAGUUGAUAUGUUGGGGGUUCUUGCCAGCUACAGCAUCACUGUCAAGGAGUUGAAGCUUUUGUUCAGCAUGCUUCGAGGAGAAAGUGGAAUCUGGCCAAGACAUGCAGUAAAAUUAUUAUCAGUUCUUAAUCAGAUGCCACAGAGACACGGUCCUGAUACUUUUUUCAAUUUCCCUGGUUGUAGCGCUGCGCUGGUUGGUGGAGAAUUUGACUUGGAGAUGAACUUUAUUAUCCAGGAUGC circ
ENSG00000172915:+:13:35040932:35045401 ENSG00000172915 ENST00000379939 + 13 35040933 35045401 22 GUAGCGCUGCGCUGGUUGGUGG bsj
ENSG00000172915:+:13:35040932:35045401 ENSG00000172915 ENST00000379939 + 13 35040733 35040942 210 UAGAUUUCUGUUUGCUAGUUUCGAUGCUCACAAUGCCUUUCACUUAUUUGUAGCUCUUAUACUUUUGAUCAAAAUUAAUUUUAUACCAGAAUCCUUGAAAUUUUUUAGAGUAGUAGCUUUGAAUUCUUGUUAUUAUUUCAUUCUACUGUCAUCGAUAACCUCCCAUGUUAACACUAUUGUUUCUUUCUGUUUACUUUCAGCUGGUUGGUG ie_up
ENSG00000172915:+:13:35040932:35045401 ENSG00000172915 ENST00000379939 + 13 35045392 35045601 210 UAGCGCUGCGGUAAGUUUUAAAUACAUGUGCUGAUUUUUAUUUAUUUAUUUUUAGGUCACCUUUAGUAAGGUUUAACUUACAUAUAAUAAAAUUUACCAGUUUAGAAAGCACAACUUGAUGAGUUUGGAAGUCAUACAACCACUACUAUAUAAUGAUUUGAACAAUUUCAUCACUCCCCAAAAUUCCCUUGUGCCUGUUGGAAGAUAUUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 2 411 0.006993007 0.0005970720 3.549936 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
CNOT4 1 314 0.004662005 0.0004564992 3.352266 GACAGA GACAGA
ZNF638 8 1773 0.020979021 0.0025708878 3.028609 GGUUCU,GGUUGG,GGUUGU,GUUCUU,GUUGGU,UGUUCG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBFOX1 4 1077 0.011655012 0.0015622419 2.899261 AGCAUG,GCAUGC,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 453 0.004662005 0.0006579386 2.824926 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.004662005 0.0007101099 2.714836 CAAGAC ACAAGA,CAAGAC
SNRPB2 3 991 0.009324009 0.0014376103 2.697278 GUAUUG,UAUUGC,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM8A 1 611 0.004662005 0.0008869128 2.394086 UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
TUT1 1 678 0.004662005 0.0009840095 2.244206 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 1054 0.006993007 0.0015289102 2.193409 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
EIF4B 2 1179 0.006993007 0.0017100607 2.031865 CUUGGA,UCGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
A1CF 3 1642 0.009324009 0.0023810421 1.969357 AGUAUA,AUCAGU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CPEB4 1 821 0.004662005 0.0011912456 1.968480 UUUUUU UUUUUU
DDX19B 1 821 0.004662005 0.0011912456 1.968480 UUUUUU UUUUUU
EIF4A3 1 821 0.004662005 0.0011912456 1.968480 UUUUUU UUUUUU
RBM28 1 822 0.004662005 0.0011926949 1.966725 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRP14 1 847 0.004662005 0.0012289250 1.923554 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM41 2 1318 0.006993007 0.0019115000 1.871208 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 1830 0.009324009 0.0026534924 1.813058 AAAGUG,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC5 4 2400 0.011655012 0.0034795387 1.743982 AGAAAG,AGAAAU,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
U2AF2 2 1477 0.006993007 0.0021419234 1.707006 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 2 1553 0.006993007 0.0022520629 1.634666 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPA3 3 2140 0.009324009 0.0031027457 1.587405 AAGGAG,CAAGGA,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
LIN28A 7 4315 0.018648019 0.0062547643 1.575995 AGGAGA,AGGAGU,GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPAB 2 1782 0.006993007 0.0025839306 1.436346 AAGACA,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NELFE 4 3028 0.011655012 0.0043896388 1.408776 CUGGUU,GGCUAA,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SF1 7 4931 0.018648019 0.0071474739 1.383517 ACAGAC,ACUAGC,CACAGA,UACGAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PABPC4 1 1251 0.004662005 0.0018144033 1.361455 AAAAAG AAAAAA,AAAAAG
PUM2 2 1890 0.006993007 0.0027404447 1.351503 GUAGAU,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SSB 1 1260 0.004662005 0.0018274462 1.351122 UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZFP36L2 1 1277 0.004662005 0.0018520827 1.331802 UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPCL1 2 2062 0.006993007 0.0029897078 1.225908 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RBM3 2 2152 0.006993007 0.0031201361 1.164304 AGACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CPEB2 2 2261 0.006993007 0.0032780993 1.093053 CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 1 0 0.09090909 6.549646e-05 10.438792 UGCGCU  
SAMD4A 1 10 0.09090909 7.204611e-04 6.979360 GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGUA,CUGGAA,CUGGCA,CUGGCC,CUGGUA,GCUGGU
MBNL1 1 36 0.09090909 2.423369e-03 5.229338 GCGCUG AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
SRSF1 1 625 0.09090909 4.100079e-02 1.148773 CGCUGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 3 226 0.009523810 0.0011436921 3.057840 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZFP36L2 12 774 0.030952381 0.0039046755 2.986776 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 7 502 0.019047619 0.0025342604 2.909974 AUACAU,AUACUU,UACAUG,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPD 15 1488 0.038095238 0.0075020153 2.344261 AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ELAVL3 15 1928 0.038095238 0.0097188634 1.970751 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 CAUAUA,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 1 283 0.004761905 0.0014308746 1.734641 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL2 61 9826 0.147619048 0.0495112858 1.576050 AAUUUA,AAUUUU,AUACUU,AUUAUU,AUUUAC,AUUUAU,AUUUUA,AUUUUU,CUUAUA,CUUUCU,GAUUUU,GUUUUA,UAAGUU,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUUAU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCUUAU,UGAUUU,UUAAUU,UUACUU,UUAUAC,UUAUUU,UUCAUU,UUCUUU,UUUACU,UUUAGU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUGG,GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ELAVL1 19 3309 0.047619048 0.0166767432 1.513701 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PPIE 54 9262 0.130952381 0.0466696896 1.488485 AAAAUU,AAAUUA,AAAUUU,AAUAAA,AAUUAA,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAUAA,AUUAAU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAUAA,UAAUUU,UAUAAU,UAUAUA,UAUUAU,UAUUUA,UAUUUU,UUAAAU,UUAAUU,UUAUUA,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
TIAL1 30 5597 0.073809524 0.0282043531 1.387889 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUU,CAGUUU,CUUUUG,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACACUA,ACUUAU,UAACCU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAAAUA,UACAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPDL 12 2689 0.030952381 0.0135530028 1.191438 AAUUUA,ACCAGA,AGAUAU,AGUAGC,AUACCA,CCUUUA,CUUUAG,GAGUAG,GCUAGU,GUAGCU,UUUAGG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUUAU,AGUAAG,UAGUAA,UAUACU,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAU,AUCAAA,AUGAUU,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUU,CCUUUC,CUUUUG,GUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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