ENSG00000127663:+:19:5039835:5047669

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000127663:+:19:5039835:5047669 ENSG00000127663 ENST00000611640 + 19 5039836 5047669 485 AUCAUCCCCCCGAAGGAGUGGAAGCCGCGGCAGACGUAUGAUGACAUCGACGACGUGGUGAUCCCGGCGCCCAUCCAGCAGGUGGUGACGGGCCAGUCGGGCCUCUUCACGCAGUACAAUAUCCAGAAGAAGGCCAUGACAGUGGGCGAGUACCGCCGCCUGGCCAACAGCGAGAAGUACUGUACCCCGCGGCACCAGGACUUUGAUGACCUUGAACGCAAAUACUGGAAGAACCUCACCUUUGUCUCCCCGAUCUACGGGGCUGACAUCAGCGGCUCUUUGUAUGAUGACGACGUGGCCCAGUGGAACAUCGGGAGCCUCCGGACCAUCCUGGACAUGGUGGAGCGCGAGUGCGGCACCAUCAUCGAGGGCGUGAACACGCCCUACCUGUACUUCGGCAUGUGGAAGACCACCUUCGCCUGGCACACCGAGGACAUGGACCUGUACAGCAUCAACUACCUGCACUUUGGGGAGCCUAAGUCCUGAUCAUCCCCCCGAAGGAGUGGAAGCCGCGGCAGACGUAUGAUGACAUCGA circ
ENSG00000127663:+:19:5039835:5047669 ENSG00000127663 ENST00000611640 + 19 5039836 5047669 22 CCUAAGUCCUGAUCAUCCCCCC bsj
ENSG00000127663:+:19:5039835:5047669 ENSG00000127663 ENST00000611640 + 19 5039636 5039845 210 GCAGGUGAGGCCCUUGUUGGCUGCAGAGUCUUCUGGGGAGUUUGAUAAGGCAAAUGGGGGGGUUCCUCGUGCCCCUGGGGGGUGUCCCGAGGUGCAGAUCUUGGGGGGUGCUGGUCUCUGGGGAGCCGGUGGCACAGUCUGCUCUCUGGCCCUGCCCUGAGGGUCUGAGGGUGCCACUGACUCCCAUCUUGGUCUUGCAGAUCAUCCCCC ie_up
ENSG00000127663:+:19:5039835:5047669 ENSG00000127663 ENST00000611640 + 19 5047660 5047869 210 CUAAGUCCUGGUGAGUGUCUGCACUGGCCCUGCCGCCGGCCGGACCGAGAGCCCCUCGGGAGGGAGUCAAUCCCGGGUACACGGCUGGGCGCCGUGGCAGGGGCCCCACCAGGUGAGGCCGCAAAGGUCGGCCUAUGACGGCUGGAGAUCUUCCGGACCGCCUGGGGUCACCCACCAGCUUUGGGGUGGGGGAUGUGCACCCCCAGAGCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 5 411 0.012371134 0.0005970720 4.372929 ACGACG,AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBM25 2 268 0.006185567 0.0003898359 3.987967 AUCGGG,UCGGGC AUCGGG,CGGGCA,UCGGGC
ANKHD1 2 339 0.006185567 0.0004927293 3.650039 AGACGU,GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM14 2 478 0.006185567 0.0006941687 3.155548 CGCGGC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
SRP14 4 847 0.010309278 0.0012289250 3.068475 CCUGUA,CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM42 1 407 0.004123711 0.0005912752 2.802042 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBM6 4 1054 0.010309278 0.0015289102 2.753368 AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
IFIH1 3 904 0.008247423 0.0013115296 2.652693 CCGCGG,GCCGCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
TUT1 2 678 0.006185567 0.0009840095 2.652162 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PPRC1 2 780 0.006185567 0.0011318283 2.450251 CGGCGC,GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
ZC3H10 3 1053 0.008247423 0.0015274610 2.432808 CAGCGA,GAGCGC,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
YBX2 4 1480 0.010309278 0.0021462711 2.264039 AACAUC,ACAUCA,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF11 1 688 0.004123711 0.0009985015 2.046107 AAGAAG AAGAAG
ACO1 2 1283 0.006185567 0.0018607779 1.733000 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPM 1 999 0.004123711 0.0014492040 1.508683 GAAGGA AAGGAA,GAAGGA,GGGGGG
ENOX1 5 3195 0.012371134 0.0046316558 1.417378 AGGACA,AGUACA,GUACAG,UGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SRSF4 6 3740 0.014432990 0.0054214720 1.412614 AAGAAG,AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPA3 3 2140 0.008247423 0.0031027457 1.410398 AAGGAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBFOX1 1 1077 0.004123711 0.0015622419 1.400326 GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SAMD4A 6 3992 0.014432990 0.0057866714 1.318565 CGGGCC,CUGGAA,CUGGAC,CUGGCA,CUGGCC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPLL 5 3534 0.012371134 0.0051229360 1.271935 CACACC,CAGACG,GACGAC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
YBX1 11 7119 0.024742268 0.0103183321 1.261768 AACAUC,ACAUCA,ACAUCG,ACCACC,AUCAUC,CACACC,CAUCAU,CCAGCA,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
PABPN1 1 1222 0.004123711 0.0017723764 1.218258 AGAAGA AAAAGA,AGAAGA
ZRANB2 4 3173 0.010309278 0.0045997733 1.164309 GGUGGU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
NOVA1 5 3872 0.012371134 0.0056127669 1.140194 ACCACC,AUCAAC,AUCAUC,CCCCCC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SRSF3 24 16536 0.051546392 0.0239654858 1.104913 ACAUCA,ACAUCG,ACCACC,ACGACG,ACUUCG,AUCAAC,AUCAUC,AUCGAC,CAUCAA,CAUCAU,CAUCGA,CCUCUU,CUCUUC,CUUCAC,UACAAU,UACAGC,UACUUC,UCAUCC,UCAUCG,UCUUCA AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
G3BP1 20 14282 0.043298969 0.0206989801 1.064773 ACACGC,ACGCAG,ACGCCC,CACGCA,CACGCC,CAUCGG,CCAUCC,CCCAUC,CCCCCC,CCCCCG,CCCCGC,CCCGGC,CCCUAC,CCGCCG,CCUCCG,CGGCAC,CGGCAG,UCGGCA ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
SRSF5 12 8869 0.026804124 0.0128544391 1.060188 AACAGC,AAGAAG,AGAAGA,CAACAG,CGCGGC,GAAGAA,GGAAGA,UACAGC,UGCGGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
FXR2 4 3434 0.010309278 0.0049780156 1.050301 GACGGG,UGACAG,UGACGA,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
A1CF 1 3 0.09090909 0.0002619859 8.438792 UGAUCA AUCAGU,CAGUAU,UAAUUG
RBM46 1 14 0.09090909 0.0009824469 6.531901 GAUCAU AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IFIH1 4 146 0.011904762 0.0007406288 4.006644 GGCCCU,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
PPRC1 2 127 0.007142857 0.0006449012 3.469351 GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPM 4 222 0.011904762 0.0011235389 3.405417 GGGGGG AAGGAA,GAAGGA,GGGGGG
MATR3 3 216 0.009523810 0.0010933091 3.122837 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRP14 1 218 0.004761905 0.0011033857 2.109602 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
SAMD4A 6 790 0.016666667 0.0039852882 2.064210 CGGGUA,CUGGCC,CUGGUC,GCUGGA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
NELFE 8 1059 0.021428571 0.0053405885 2.004465 CUCUCU,CUCUGG,GGUCUC,GUCUCU,UCUCUG,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ESRP2 5 731 0.014285714 0.0036880290 1.953651 GGGGAG,GGGGAU,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
YBX1 8 1321 0.021428571 0.0066606207 1.685807 AUCAUC,CCACCA,CCCUGC,GGUCUG,GUCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
HNRNPH2 20 3198 0.050000000 0.0161174929 1.633301 CUGGGG,GGAGGG,GGGAGG,GGGGAG,GGGGGA,GGGGGG,GGGUGU,UGGGGG,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
FUS 10 1711 0.026190476 0.0086255542 1.602353 CGGUGG,GGGGGG,GGGUGC,GGGUGG,GGGUGU,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPH1 19 3406 0.047619048 0.0171654575 1.472030 CUGGGG,GGAGGG,GGGAGG,GGGGAG,GGGGGG,GGGUGU,UGGGGG,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AGAUCA,AUCAUC,GAGUCA,GGGGGG AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
G3BP1 17 3431 0.042857143 0.0172914148 1.309480 ACCCAC,ACCCCC,AGGCCC,AGGCCG,CCCACC,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCUC,CCCUCG,CCGCCG,CCGGCC,CCUCGG,CGGCCG,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPF 16 3360 0.040476190 0.0169336961 1.257177 AUGGGG,CUGGGG,GGAGGG,GGGAGG,GGGAUG,GGGGAG,GGGGGG,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GGCUGC,GGGUAC,GGGUGC,UCGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBM5 10 2359 0.026190476 0.0118903668 1.139249 AGGGAG,AGGGUG,GAGGGA,GAGGGU,GGGGGG,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGAU,GGAGGG,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 GGGGGG AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPK 13 3244 0.033333333 0.0163492543 1.027741 ACCCCC,CAUCCC,CCCCAC,CCCCCA,GCCCCU,GGGGGG,UCCCAU,UCCCCC,UCCCGA AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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