ENSG00000135250:-:7:105132790:105203785

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000135250:-:7:105132790:105203785 ENSG00000135250 ENST00000357311 - 7 105132791 105203785 1681 GCCGGAGCCUCAACAGAAAGCUCCUUUAGUUCCUCCUCCUCCACCGCCACCACCACCACCACCGCCACCUUUGCCAGACCCCACACCCCCGGAGCCAGAGGAGGAGAUCCUGGGAUCAGAUGAUGAGGAGCAAGAGGACCCUGCGGACUACUGCAAAGGUGGAUAUCAUCCAGUGAAAAUUGGAGACCUCUUCAAUGGCCGGUAUCAUGUUAUUAGAAAGCUUGGAUGGGGGCACUUCUCUACUGUCUGGCUGUGCUGGGAUAUGCAGGGGAAAAGAUUUGUUGCAAUGAAAGUUGUAAAAAGUGCCCAGCAUUAUACGGAGACAGCCUUGGAUGAAAUAAAAUUGCUCAAAUGUGUUCGAGAAAGUGAUCCCAGUGACCCAAACAAAGACAUGGUGGUCCAGCUCAUUGACGACUUCAAGAUUUCAGGCAUGAAUGGGAUACAUGUCUGCAUGGUCUUCGAAGUACUUGGCCACCAUCUCCUCAAGUGGAUCAUCAAAUCCAACUAUCAAGGCCUCCCAGUACGUUGUGUGAAGAGUAUCAUUCGACAGGUCCUUCAAGGGUUAGAUUACUUACACAGUAAGUGCAAGAUCAUUCAUACUGACAUAAAGCCGGAAAAUAUCUUGAUGUGUGUGGAUGAUGCAUAUGUGAGAAGAAUGGCAGCUGAGGCCACUGAGUGGCAGAAAGCAGGUGCUCCUCCUCCUUCAGGGUCUGCAGUGAGUACGGCUCCACAGCAGAAACCUAUAGGAAAAAUAUCUAAAAACAAAAAGAAAAAACUGAAAAAGAAACAGAAGAGGCAGGCUGAGUUAUUGGAGAAGCGCCUGCAGGAGAUAGAAGAAUUGGAGCGAGAAGCUGAAAGGAAAAUAAUAGAAGAAAACAUCACCUCAGCUGCACCUUCCAAUGACCAGGAUGGCGAAUACUGCCCAGAGGUGAAACUAAAAACAACAGGAUUAGAGGAGGCGGCUGAGGCAGAGACUGCAAAGGACAAUGGUGAAGCUGAGGACCAGGAAGAGAAAGAAGAUGCUGAGAAAGAAAACAUUGAAAAAGAUGAAGAUGAUGUAGAUCAGGAACUUGCGAACAUAGACCCUACGUGGAUAGAAUCACCUAAAACCAAUGGCCAUAUUGAGAAUGGCCCAUUCUCACUGGAGCAGCAACUGGACGAUGAAGAUGAUGAUGAAGAAGACUGCCCAAAUCCUGAGGAAUAUAAUCUUGAUGAGCCAAAUGCAGAAAGUGAUUACACAUAUAGCAGCUCCUAUGAACAAUUCAAUGGUGAAUUGCCAAAUGGACGACAUAAAAUUCCCGAGUCACAGUUCCCAGAGUUUUCCACCUCGUUGUUCUCUGGAUCCUUAGAACCUGUGGCCUGCGGCUCUGUGCUUUCUGAGGGAUCACCACUUACUGAGCAAGAGGAGAGCAGUCCAUCCCAUGACAGAAGCAGAACGGUUUCAGCCUCCAGUACUGGGGAUUUGCCAAAAGCAAAAACCCGGGCAGCUGACUUGUUGGUGAAUCCCCUGGAUCCGCGGAAUGCAGAUAAAAUUAGAGUAAAAAUUGCUGACCUGGGAAAUGCUUGUUGGGUGCAUAAACACUUCACGGAAGACAUCCAGACGCGUCAGUACCGCUCCAUAGAGGUUUUAAUAGGAGCGGGGUACAGCACCCCUGCGGACAUCUGGAGCACGGCGUGUAUGGCCGGAGCCUCAACAGAAAGCUCCUUUAGUUCCUCCUCCUCCACCGCCAC circ
ENSG00000135250:-:7:105132790:105203785 ENSG00000135250 ENST00000357311 - 7 105132791 105203785 22 CGGCGUGUAUGGCCGGAGCCUC bsj
ENSG00000135250:-:7:105132790:105203785 ENSG00000135250 ENST00000357311 - 7 105203776 105203985 210 GAUUUUUUUUUUUUUUGGCCUGACUUAUAUGUUGAAACACUACUUGAAUUCAACUAAAAUGGGUGAAGUGACAUUAAAUGACAUUUCUUCUUAGUAUGUGACAAGUUUUAUUUUUUCCCCCAUAUUAAGAAGUGCUCAAAUGCAUCCAUAAUGCAAGAUGUACUUCUAAGUAAAUAGCAAUUUUCUCUCUGCUCUUUCAGGCCGGAGCCU ie_up
ENSG00000135250:-:7:105132790:105203785 ENSG00000135250 ENST00000357311 - 7 105132591 105132800 210 GGCGUGUAUGGUAAGGACGGCUGUGCCCUUUGCUGCCAUGGGAAUUGGCUCGUUCCUUUCACACUCUGGAUGGGGCUGAGUCUCUCUGAGGCAUGCGACCUCAGUUUUUCUGACUGUAAGGGUCAUCCACCGUGGGCUGGGUGAGGGGAAGGUUGCUGCCGCAGGCAUCUUAAGAAGUGGAAGGAUCCUCCUCAGGCGGGCCCUGGGUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001189768 0.0001130379 3.395802 GCAUAA GCAUAA
ESRP1 1 156 0.001189768 0.0002275250 2.386583 AGGGAU AGGGAU
PABPC3 12 1234 0.007733492 0.0017897669 2.111348 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPN1 10 1222 0.006543724 0.0017723764 1.884427 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM25 1 268 0.001189768 0.0003898359 1.609742 CGGGCA AUCGGG,CGGGCA,UCGGGC
FXR1 2 411 0.001784652 0.0005970720 1.579666 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PABPC5 16 2400 0.010113028 0.0034795387 1.539247 AGAAAA,AGAAAG,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NXF1 1 286 0.001189768 0.0004159215 1.516297 AACCUG AACCUG
RBM6 6 1054 0.004164188 0.0015289102 1.445532 AAUCCA,AUCCAA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM46 28 4554 0.017251636 0.0066011240 1.385950 AAUGAA,AUCAAA,AUCAAG,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CNOT4 1 314 0.001189768 0.0004564992 1.381996 GACAGA GACAGA
TRA2A 41 6871 0.024985128 0.0099589296 1.327007 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ANKHD1 1 339 0.001189768 0.0004927293 1.271813 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SART3 14 2634 0.008923260 0.0038186524 1.224507 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
NOVA2 21 4013 0.013087448 0.0058171047 1.169811 ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AUCACC,AUCAUC,GAGACA,GAGGCA,GAGUCA,GAUCAC,UAGAUC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
YBX1 38 7119 0.023200476 0.0103183321 1.168945 AACAUC,ACAUCA,ACAUCU,ACCACC,AUCAUC,CACACC,CACCAC,CAGCAA,CAUCUG,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GCCUGC,GGUCUG,GUCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
G3BP2 8 1644 0.005353956 0.0023839405 1.167257 AGGAUG,AGGAUU,GGAUAG,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
MATR3 3 739 0.002379536 0.0010724109 1.149822 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
CELF2 9 1886 0.005948840 0.0027346479 1.121253 AUGUGU,GUGUGU,GUUGUU,UAUGUG,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TARDBP 13 2654 0.008328376 0.0038476365 1.114063 GAAUGG,GUGAAU,GUGUGU,GUUGUG,GUUGUU,UGAAUG,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZNF638 8 1773 0.005353956 0.0025708878 1.058339 CGUUGU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF5 6 1415 0.004164188 0.0020520728 1.020953 GUGUGG,GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM42 1 407 0.001189768 0.0005912752 1.008779 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF1 1 625 0.09090909 0.04100079 1.148773 GGCCGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 82 0.007142857 0.0004181782 4.094312 AAGAAG AAGAAG
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PTBP2 2 146 0.007142857 0.0007406288 3.269679 CUCUCU CUCUCU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
RBM6 2 191 0.007142857 0.0009673519 2.884389 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
U2AF2 13 1071 0.033333333 0.0054010480 2.625654 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
KHDRBS2 10 1051 0.026190476 0.0053002821 2.304901 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPCL1 13 1381 0.033333333 0.0069629182 2.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 13 1434 0.033333333 0.0072299476 2.204908 AGGCAU,GAGGCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
NELFE 8 1059 0.021428571 0.0053405885 2.004465 CUCUCU,CUCUGG,GUCUCU,UCUCUC,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
FUS 13 1711 0.033333333 0.0086255542 1.950277 GGGUGA,GGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS3 12 1646 0.030952381 0.0082980653 1.899203 AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
NOVA1 10 1428 0.026190476 0.0071997179 1.863030 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAG,GGGAAU,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 CUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AGGGGA,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGCUG,GGGGCU,GGGUGU,UGGGUG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAGAAG,GAAGGA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
FXR2 3 730 0.009523810 0.0036829907 1.370661 GACAAG,GGACGG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
TIA1 27 5140 0.066666667 0.0259018541 1.363910 AUUUUC,AUUUUU,CCUUUC,GUUUUA,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGUAA,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGGUUG,AGUAAA,AGUAUG,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TIAL1 28 5597 0.069047619 0.0282043531 1.291674 AAUUUU,AGUUUU,AUUUUC,AUUUUU,CAGUUU,GUUUUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUUAUU,UUUCAG,UUUUAU,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPF 16 3360 0.040476190 0.0169336961 1.257177 AGGGGA,AUGGGA,AUGGGG,GAAGGU,GAGGGG,GAUGGG,GGAAGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGCU,UGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
PTBP1 38 8003 0.092857143 0.0403264813 1.203285 AUUUUC,AUUUUU,CAUCUU,CCUUUC,CUCUCU,CUCUUU,CUUCUU,GCUGUG,UAUUUU,UCCCCC,UCUCUC,UCUUCU,UCUUUC,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
HNRNPH1 15 3406 0.038095238 0.0171654575 1.150102 AGGGGA,GAAGGU,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGCU,GGGUGU,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 14 3198 0.035714286 0.0161174929 1.147874 AGGGGA,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGCU,GGGUGU,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUUAU,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
FMR1 24 5430 0.059523810 0.0273629585 1.121243 AAGGAU,CGGCUG,CUGAGG,GAAGGA,GACAAG,GCUGAG,GCUGGG,GGCUGA,GGCUGG,GGGCUG,UAAGGA,UGACAA,UGCGAC,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,UAUGUG,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 UAUUUU,UUAUUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACUA,ACUUAU,CACACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPK 13 3244 0.033333333 0.0163492543 1.027741 CCCCAU,CCCCCA,UCCCCC,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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