ENSG00000184465_ENSG00000272848:-:6:169602218:169652008

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000184465_ENSG00000272848:-:6:169602218:169652008 ENSG00000184465_ENSG00000272848 MSTRG.29337.7 - 6 169602219 169652008 790 CUGCACGGAACGUCAUGAAGGACCAACGCCUGGUUUUCCAUAGUAAAGUUAGGUCAUCUGGUUAUGCGUCAGCACCACAUGUAACUAUGUUUUCACCAAAGACCAACAUCAAGAGUGAGGGGAAAGGAUCUUCAAGGAGCAGGAGCAGCUGCGCACGGGAGGCAUACCCCGUGGAGUGCGCUGUGCCCACCAAGCCCGGCCCCCAGGUCGCUGCCGCCCCCACCUGCACACGUGUAUGCUGCAUCCAGUACUCAGGAGAUGGGCAGUGGCUGGCCUGUGGGUUGGCCAACCAUCUGUUACUCGUUUUUGAUGCCAGCCUGACUGGGACACCUGCUGUGUUUUCAGGUCACGACGGGGCAGUGAAUGCCGUGUGCUGGAGCCAGGACCGGAGGUGGCUGCUCUCUGCGGCCCGGGACGGGACCCUGCGAAUGUGGUCGGCUCGUGGGGCAGAGCUCGCACUGCUUCUGAUAUAAACAGAAGAGCAAGUCCAAGCUGAUUUGCAGGCUCUCCACGACGGGUGCAGUAGACAUGACCAGUUUAUCGGCAGUCAACGACUUUUAUUCCCACAUCGUACUCGCAGCUGGCCGGAACAGGACCGUGGAAGUGUUUGACCUCAACGCCGGCUGCAGUGCAGCGGUGAUAGCGGAAGCCCACUCACGGCCUGUCCAUCAAAUCUGCCAAAAUAAAGUGUGAGCGCCACUUUGAAGGGCAUCCAACCCGCGGCUAUCCAUGUGGAAUCGCUUUCAGUCCUUGUGGACGAUUCGCGGCUUGUGGGGCCGAGGACAGACACCUGCACGGAACGUCAUGAAGGACCAACGCCUGGUUUUCCAUAGUAAAGUU circ
ENSG00000184465_ENSG00000272848:-:6:169602218:169652008 ENSG00000184465_ENSG00000272848 MSTRG.29337.7 - 6 169602219 169652008 22 AGGACAGACACCUGCACGGAAC bsj
ENSG00000184465_ENSG00000272848:-:6:169602218:169652008 ENSG00000184465_ENSG00000272848 MSTRG.29337.7 - 6 169651999 169652208 210 UAUCCUUUUAAUCCCUUGAUUUAAUCUUUUGCUGAUGAUGGUUGGUGUGACUUCAGAUAUGAAACCUCUUAAAUUUAUGGUCAGGAAUUCAUUCUGUUUGUGUGAAUGUUUCUGUUUUGAAGAGACUCUGUUCUUCUCAUGUCCAUCAUGAGAUGCUAAUUUUAAGUGUUUGUUUCUUCUUUAAAAUUGCCUUUCCACAGCUGCACGGAA ie_up
ENSG00000184465_ENSG00000272848:-:6:169602218:169652008 ENSG00000184465_ENSG00000272848 MSTRG.29337.7 - 6 169602019 169602228 210 GGACAGACACGUAUGUACUGUUUGACUGUCUAUAAAUGUAGAGAGUCUAGACUUUGGUAAUGUGUAGACUGUUUAAUAUUGUUGCAUAUUAGGAUAGAAACCUACUUUCAGCUUGACUGUUGGUCAAUAUUUUAAGACUCUUACACAGUAAUAGCAUUUUAAUAAUGUGUGAGGUAUGAAAGAUGUUUUUACUGAAGCAUGAUAAACUAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.002531646 0.0002898408 3.126743 CCGCCC CCGCCC
PTBP2 1 267 0.002531646 0.0003883867 2.704510 CUCUCU CUCUCU
FXR1 2 411 0.003797468 0.0005970720 2.669061 ACGACG ACGACA,ACGACG,AUGACA,AUGACG
CNOT4 1 314 0.002531646 0.0004564992 2.471391 GACAGA GACAGA
RBM14 2 478 0.003797468 0.0006941687 2.451680 CGCGGC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
ANKHD1 1 339 0.002531646 0.0004927293 2.361208 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM6 5 1054 0.007594937 0.0015289102 2.312534 AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM8A 2 611 0.003797468 0.0008869128 2.098174 GUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ERI1 2 632 0.003797468 0.0009173461 2.049500 UUUCAG UUCAGA,UUUCAG
SRP14 3 847 0.005063291 0.0012289250 2.042679 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBFOX2 1 452 0.002531646 0.0006564894 1.947232 UGACUG UGACUG,UGCAUG
SNRPB2 3 991 0.005063291 0.0014376103 1.816403 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 1 497 0.002531646 0.0007217036 1.810597 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CSTF2 6 1967 0.008860759 0.0028520334 1.635439 GUGUUU,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IFIH1 2 904 0.003797468 0.0013115296 1.533788 CCGCGG,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
SSB 3 1260 0.005063291 0.0018274462 1.470247 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 3 1283 0.005063291 0.0018607779 1.444170 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF6 8 2997 0.011392405 0.0043447134 1.390739 GUGAGG,GUGGGG,UGUGAG,UGUGGG,UGUGGU,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZC3H10 2 1053 0.003797468 0.0015274610 1.313902 GAGCGC,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
CELF5 3 1415 0.005063291 0.0020520728 1.302994 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPA3 5 2140 0.007594937 0.0031027457 1.291493 AAGGAG,AGGAGC,CAAGGA,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
YBX2 3 1480 0.005063291 0.0021462711 1.238243 AACAUC,ACAUCA,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NELFE 7 3028 0.010126582 0.0043896388 1.205973 CUCUCU,CUGGUU,UCUCUG,UCUGGU,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM28 1 822 0.002531646 0.0011926949 1.085850 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 2 1237 0.003797468 0.0017941145 1.081766 AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.002531646 0.0012057377 1.070159 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
FXR2 7 3434 0.010126582 0.0049780156 1.024505 GACAGA,GACGGG,GGACAG,GGACGA,GGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPA 1 39 0.09090909 0.002619859 5.116864 ACCUGC AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,GAGCAG,GAUACC,GCAGUA,GGAGAU,GGGUAU,GUAGGC,GUAGUG,UAUGCU,UCCUGC,UGCACG,UUCCUG,UUGCAC
SRSF6 1 68 0.09090909 0.004519256 4.330267 CACCUG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
ZFP36 1 126 0.09090909 0.008318051 3.450107 ACCUGC AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF2 1 479 0.09090909 0.031438302 1.531901 ACCUGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 CCUGCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG UGACUG,UGCAUG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX1 4 287 0.011904762 0.0014510278 3.036392 AGCAUG,GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
SSB 6 505 0.016666667 0.0025493753 2.708750 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM28 3 340 0.009523810 0.0017180572 2.470761 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ZNF638 6 646 0.016666667 0.0032597743 2.354122 GGUUGG,GUUCUU,GUUGGU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CSTF2 9 1022 0.023809524 0.0051541717 2.207726 GUGUUU,GUUUUG,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
CELF1 9 1097 0.023809524 0.0055320435 2.105654 CUGUCU,GUUUGU,UGUGUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF2 6 881 0.016666667 0.0044437727 1.907109 AUGUGU,GUAUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TARDBP 7 1034 0.019047619 0.0052146312 1.868974 GAAUGU,GUGAAU,GUUUUG,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,AAGACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM1 14 2172 0.035714286 0.0109482064 1.705807 AAUAUU,AAUGUU,GUAAUA,UAAUAU,UAAUGU,UGUAGA,UGUCCA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM24 5 888 0.014285714 0.0044790407 1.673311 GUGUGA,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUG,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AUCAUG,AUGAAA,AUGAUA,AUGAUG,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUA,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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