ENSG00000079246:+:2:216141185:216162048

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000079246:+:2:216141185:216162048 ENSG00000079246 ENST00000460284 + 2 216141186 216162048 492 AGGCACAGUUGAAUGCUGUUGAUGCUUUGAUUGACUCCAUGAGCUUGGCAAAGAAAGAUGAGAAGACAGACACCCUUGAAGACUUGUUUCCAACCACCAAAAUCCCAAAUCCUCGAUUUCAGAGAUUAUUUCAGUGUCUGCUGCACAGAGCUUUACAUCCCCGGGAGCCUCUACCCCCAAUUCAGCAGCAUAUUUGGAAUAUGCUGAAUCCUCCCGCUGAGGUGACAACAAAAAGUCAGAUUCCUCUCUCUAAAAUAAAGACCCUUUUUCCUCUGAUUGAAGCCAAGAAAAAGGAUCAAGUGACUGCUCAGGAAAUUUUCCAAGACAACCAUGAAGAUGGACCUACAGCUAAAAAAUUAAAGACUGAGCAAGGGGGAGCCCACUUCAGCGUCUCCAGUCUGGCUGAAGGCAGUGUCACCUCUGUUGGAAGUGUGAAUCCUGCUGAAAACUUCCGUGUUCUAGUGAAACAGAAGAAGGCCAGCUUUGAGGAAGAGGCACAGUUGAAUGCUGUUGAUGCUUUGAUUGACUCCAUGAGCUUGGCA circ
ENSG00000079246:+:2:216141185:216162048 ENSG00000079246 ENST00000460284 + 2 216141186 216162048 22 CUUUGAGGAAGAGGCACAGUUG bsj
ENSG00000079246:+:2:216141185:216162048 ENSG00000079246 ENST00000460284 + 2 216140986 216141195 210 AGUCAGUCACUCUAAAUCGAUCUUUUCAUGGAUAAGAAAACCAAGACUUGGGUUAAAUACGUGCAUAGCUAGAGAAUACUUUGGCAGGGCCAGGACUGUAUAACCUGCCAAUAUUGCCGUGGAUAUCUCUACGUAGAAAGCAUUUGUUUUAGUGGAGAAUAAUGGAAAUAAUCAUUUUUCUUUCGGCUUCUCUGUUUAAGAGGCACAGUU ie_up
ENSG00000079246:+:2:216141185:216162048 ENSG00000079246 ENST00000460284 + 2 216162039 216162248 210 UUUGAGGAAGGUGAGUGGUUGACUUUGCAUUUAGGAGAAGCUGUUUAGUUAAGCUAACUAAUUUAAAGUCUAGAUUAAGAACUGUAGCCUUUUGUUGUAACACUUUAGCAUUUUUCUUUACUGGCGGAUCUUUGUGGUUUUCCCUUGUUAGGGAGCUCACUGAGGCAACAUUAUGAGCACAUGAAAGUGAACUCAGCACAGAUUUUCUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 267 0.006097561 0.0003883867 3.972667 CUCUCU CUCUCU
CNOT4 1 314 0.004065041 0.0004564992 3.154585 GACAGA GACAGA
ERI1 3 632 0.008130081 0.0009173461 3.147732 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX2 1 452 0.004065041 0.0006564894 2.630426 UGACUG UGACUG,UGCAUG
RBMY1A1 1 489 0.004065041 0.0007101099 2.517155 CAAGAC ACAAGA,CAAGAC
HNRNPAB 6 1782 0.014227642 0.0025839306 2.461057 AAAGAC,AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO1 1 548 0.004065041 0.0007956130 2.353131 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
EIF4B 3 1179 0.008130081 0.0017100607 2.249222 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC4 3 1251 0.008130081 0.0018144033 2.163775 AAAAAA,AAAAAG AAAAAA,AAAAAG
SRSF11 1 688 0.004065041 0.0009985015 2.025433 AAGAAG AAGAAG
U2AF2 3 1477 0.008130081 0.0021419234 1.924363 UUUUCC,UUUUUC UUUUCC,UUUUUC,UUUUUU
IGHMBP2 1 813 0.004065041 0.0011796520 1.784908 AAAAAA AAAAAA
PABPN1 2 1222 0.006097561 0.0017723764 1.782547 AGAAGA AAAAGA,AGAAGA
SNRNP70 2 1237 0.006097561 0.0017941145 1.764960 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SSB 2 1260 0.006097561 0.0018274462 1.738403 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 2 1283 0.006097561 0.0018607779 1.712326 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
SRSF4 7 3740 0.016260163 0.0054214720 1.584585 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 13 6871 0.028455285 0.0099589296 1.514634 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
NELFE 5 3028 0.012195122 0.0043896388 1.474130 CUCUCU,CUGGCU,UCUCUC,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SART3 4 2634 0.010162602 0.0038186524 1.412134 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA3 3 2140 0.008130081 0.0031027457 1.389724 GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 3 2152 0.008130081 0.0031201361 1.381661 AAAACU,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBFOX1 1 1077 0.004065041 0.0015622419 1.379652 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ZNF638 2 1773 0.006097561 0.0025708878 1.245966 UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC5 3 2400 0.008130081 0.0034795387 1.224374 AGAAAA,AGAAAG,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMX 7 4925 0.016260163 0.0071387787 1.187593 AAGAAG,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AUCCCA,AUCCCC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PABPC3 1 1234 0.004065041 0.0017897669 1.183498 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ZFP36L2 1 1277 0.004065041 0.0018520827 1.134121 UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ENOX1 4 3195 0.010162602 0.0046316558 1.133670 AAGACA,AGACAG,CAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBM41 1 1318 0.004065041 0.0019115000 1.088565 UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRPA 10 7380 0.022357724 0.0106965744 1.063624 AUGCUG,AUUCCU,CCUGCU,GAUUCC,GUUUCC,UAUGCU,UCCUGC,UGCACA,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
KHDRBS1 5 4064 0.012195122 0.0058910141 1.049716 CAAAAU,CUAAAA,GAAAAC,UAAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 4 3429 0.010162602 0.0049707696 1.031729 AAAUAA,AAUAAA,AUAAAG,AUUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FXR2 4 3434 0.010162602 0.0049780156 1.029627 AGACAA,AGACAG,GACAGA,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NOVA2 1 15 0.09090909 0.001047943 6.438792 GAGGCA ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
SRSF4 1 18 0.09090909 0.001244433 6.190864 GGAAGA AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 2 54 0.13636364 0.003602305 5.242395 AAGAGG,GAAGAG AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF5 1 44 0.09090909 0.002947341 4.946939 GGAAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF6 1 68 0.09090909 0.004519256 4.330267 GGAAGA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SFPQ 3 153 0.18181818 0.010086455 4.172005 AAGAGG,GAAGAG,GGAAGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AAGAGG AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF10 1 160 0.09090909 0.010544931 3.107875 AAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 4 625 0.22727273 0.041000786 2.470701 AAGAGG,GAAGAG,GAGGCA,GGAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GCGGAU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
SSB 4 505 0.011904762 0.0025493753 2.223323 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAGACU,AAUACG,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 AAUCAU,ACUAAU,UAACCU,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAAA,AAGAGG,AGAAAG,AGGAAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAC,AGGAAG,AUAAGA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAU,CACAGA,CACUGA,CAGUCA,GCUAAC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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