ENSG00000083720:-:5:41749526:41862750

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000083720:-:5:41749526:41862750 ENSG00000083720 ENST00000196371 - 5 41749527 41862750 1341 GGAUGUGUUUGUUCCUUUUCCACCAGUGCUCAUCGCCAUACCAAGUUUUAUACAGAUCCAGUAGAAGCUGUAAAAGACAUCCCUGAUGGUGCCACGGUUUUGGUUGGUGGUUUUGGGCUAUGUGGAAUUCCAGAGAAUCUUAUAGAUGCUUUACUGAAAACUGGAGUAAAAGGACUAACUGCAGUCAGCAACAAUGCAGGGGUUGACAAUUUUGGUUUGGGGCUUUUGCUUCGGUCCAAGCAGAUAAAACGCAUGGUCUCUUCAUAUGUGGGAGAAAAUGCAGAAUUUGAACGACAGUACUUAUCUGGUGAAUUAGAAGUGGAGCUGACACCACAGGGCACACUUGCAGAGAGGAUCCGUGCAGGCGGGGCUGGAGUUCCUGCAUUUUACACCCCAACAGGGUAUGGGACCCUGGUACAAGAAGGAGGAUCGCCCAUCAAAUACAACAAAGAUGGCAGUGUUGCCAUUGCCAGUAAGCCAAGAGAGGUGAGGGAGUUCAAUGGUCAGCACUUUAUUUUGGAGGAAGCAAUUACAGGGGAUUUUGCUUUGGUGAAAGCCUGGAAGGCGGACCGAGCAGGAAACGUGAUUUUCAGGAAAAGUGCAAGGAAUUUCAACUUGCCAAUGUGCAAAGCUGCAGAAACCACAGUGGUAGAGGUUGAAGAAAUUGUGGAUAUUGGAGCAUUUGCUCCAGAAGACAUCCAUAUUCCUCAGAUUUAUGUACAUCGCCUUAUAAAGGGAGAAAAAUAUGAGAAAAGAAUUGAGCGUUUAUCAAUCCGGAAAGAGGGAGAUGGGGAAGCCAAAUCUGCUAAACCUGGAGAUGACGUAAGGGAACGAAUCAUCAAGAGGGCCGCUCUUGAGUUUGAGGAUGGCAUGUAUGCUAAUUUGGGCAUAGGAAUCCCUCUCCUGGCCAGCAAUUUUAUCAGCCCAAAUAUAACUGUUCAUCUUCAAAGUGAAAAUGGAGUUCUGGGUUUGGGUCCAUAUCCACGACAACAUGAAGCUGAUGCAGAUCUCAUCAAUGCAGGCAAGGAAACAGUUACUAUUCUUCCAGGAGCCUCUUUUUUCUCCAGCGAUGAAUCAUUUGCAAUGAUUAGAGGUGGACACGUCGAUCUGACAAUGCUAGGAGCGAUGCAGGUUUCCAAAUAUGGUGACCUGGCUAACUGGAUGAUACCUGGGAAGAUGGUGAAAGGAAUGGGAGGUGCUAUGGAUUUAGUGUCCAGUGCGAAAACCAAAGUGGUGGUCACCAUGGAGCAUUCUGCAAAGGGAAAUGCACAUAAAAUCAUGGAGAAAUGUACAUUACCAUUGACUGGAAAGCAAUGUGUCAACCGCAUUAUUACUGAAAAGGGAUGUGUUUGUUCCUUUUCCACCAGUGCUCAUCGCCAUACCAAGUUUUA circ
ENSG00000083720:-:5:41749526:41862750 ENSG00000083720 ENST00000196371 - 5 41749527 41862750 22 UUACUGAAAAGGGAUGUGUUUG bsj
ENSG00000083720:-:5:41749526:41862750 ENSG00000083720 ENST00000196371 - 5 41862741 41862950 210 CAUGUAUGCCAUAAAUAUAUACAUGUAUUACCUGUAUAAAUAUAUACAUUAUAUACAGUUAUUACCUGGCAAUUAAAAACGUGUAUAUAUAAAGGAGAUAAUGAAAUUAUCAUUUGUCUAUCAAUUGAAUAAAUUGCUACACACACAAAGUAAAGCUGUAUCUCCAAAUGAUUAUCAAUUUUUUUUUUUUAAUAUUUCAGGGAUGUGUUU ie_up
ENSG00000083720:-:5:41749526:41862750 ENSG00000083720 ENST00000196371 - 5 41749327 41749536 210 UACUGAAAAGGUAAAAAGUGCUUUUUCUACUAUUACCAUGUUUUAAGUAAGCAUUUUUAGAAAGUUUUGUUACCUUCUAAGAGUGUAUUACACCAGUAGUCAUAGGAUUAAUUUAGUCUGUGGGCAGAACGAAUAGGAAAGCUCAUCAAUUUAAUGUUUCUAAAUGUAGAAUUCUUUAUGUGCAACUCUUUGGAAACAUGCAAACAAAAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.001491424 0.0002275250 2.712594 AGGGAU AGGGAU
FXR1 3 411 0.002982849 0.0005970720 2.320714 ACGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
NXF1 1 286 0.001491424 0.0004159215 1.842307 AACCUG AACCUG
ANKHD1 1 339 0.001491424 0.0004927293 1.597823 GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
MATR3 3 739 0.002982849 0.0010724109 1.475833 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPM 4 999 0.003728561 0.0014492040 1.363358 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ZC3H10 4 1053 0.003728561 0.0015274610 1.287483 CAGCGA,CCAGCG,GAGCGA,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBFOX2 1 452 0.001491424 0.0006564894 1.183847 UGACUG UGACUG,UGCAUG
RBMY1A1 1 489 0.001491424 0.0007101099 1.070576 ACAAGA ACAAGA,CAAGAC
ACO1 4 1283 0.003728561 0.0018607779 1.002713 CAGUGC,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 1 0.09090909 0.0001309929 9.438792 AGGGAU AGGGAU
HNRNPF 3 90 0.18181818 0.0059601782 4.930997 AAGGGA,AGGGAU,GGGAUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH3 1 61 0.09090909 0.0040607807 4.484596 AAGGGA AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.0053052135 4.098942 AAGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 AAGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SFPQ 2 153 0.13636364 0.0100864553 3.756968 AAGGGA,AGGGAU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 2 160 0.13636364 0.0105449306 3.692837 AAAGGG,AAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
FMR1 1 117 0.09090909 0.0077285827 3.556149 AAGGGA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
ZFP36 1 126 0.09090909 0.0083180508 3.450107 AAAAGG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
RBMS1 8 217 0.021428571 0.0010983474 4.286129 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 8 221 0.021428571 0.0011185006 4.259898 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS3 10 562 0.026190476 0.0028365578 3.206829 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 11 764 0.028571429 0.0038542926 2.890035 GUAUAU,UAAAUA,UAUAUA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
CPEB4 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
HNRNPLL 7 748 0.019047619 0.0037736800 2.335567 ACACAC,ACACCA,CAAACA,CACACA,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACAU,UACAUG,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PUM1 20 2172 0.050000000 0.0109482064 2.191234 AAUAUU,AAUGUU,AGAAUU,AGAUAA,GUAUAU,UAAAUA,UAAUAU,UAAUGU,UAUAUA,UGUAGA,UGUAUA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SRP14 1 218 0.004761905 0.0011033857 2.109602 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
KHDRBS3 13 1646 0.033333333 0.0082980653 2.006119 AAUAAA,AGAUAA,AUAAAG,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPL 11 1419 0.028571429 0.0071543732 1.997676 AAACAA,AACAAA,AAUAAA,ACACAA,ACACAC,ACACCA,CACAAA,CACACA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
U2AF2 8 1071 0.021428571 0.0054010480 1.988224 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM46 8 1091 0.021428571 0.0055018138 1.961556 AAUGAA,AAUGAU,AUCAAU,AUCAUU,AUGAAA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CPEB2 11 1487 0.028571429 0.0074969770 1.930192 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 8 1117 0.021428571 0.0056328094 1.927609 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 UUUUUU AAAAAA,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,AUUUAA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAGUG,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPC 13 2006 0.033333333 0.0101118501 1.720919 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAG,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 AUUUAA,CUAAAU,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SNRPA 12 1947 0.030952381 0.0098145909 1.657050 AGGAGA,AGUAGU,CAGUAG,GGAGAU,GUAGUC,GUAUGC,GUUACC,UACCUG,UUACCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AUACAG,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PPIE 58 9262 0.140476190 0.0466696896 1.589768 AAAUAU,AAAUUA,AAUAAA,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUUU,UAAAAA,UAAAUA,UAAAUU,UAAUAU,UAAUUU,UAUAAA,UAUAUA,UUAAAA,UUAAUA,UUAAUU,UUAUAU,UUAUUA,UUUAAU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AGUCAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NOVA1 7 1428 0.019047619 0.0071997179 1.403598 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
DAZAP1 15 2878 0.038095238 0.0145052398 1.393037 AAUUUA,AGGAAA,AGGUAA,AGUAAA,AGUAAG,UAGGAA,UAGGAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,ACACAC,CAAACA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
IGF2BP2 10 2163 0.026190476 0.0109028617 1.264335 AAAAAC,ACACAC,CAAAAC,CAAACA,CAACUC,CACACA,GAAUUC,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
FUS 7 1711 0.019047619 0.0086255542 1.142922 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,GUCUGU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ELAVL2 43 9826 0.104761905 0.0495112858 1.081285 AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUAG,AUUUUU,CAUUUU,CUUUUU,GUUUUA,UAAUUU,UAUAUA,UCAUUU,UGUAUU,UUAAGU,UUAAUU,UUAUAU,UUAUGU,UUCUUU,UUUAAG,UUUAAU,UUUAGU,UUUAUG,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACAC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAA,GGUAAA,GUAAAG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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