circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000198363:-:8:61680967:61684188
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000198363:-:8:61680967:61684188 | ENSG00000198363 | ENST00000517856 | - | 8 | 61680968 | 61684188 | 219 | AGACAAAGCAUGGAGGACACAAGAAUGGGAGGAAAGGCGGACUCUCAGGAACUUCAUUCUUCACGUGGUUUAUGGUGAUUGCAUUGCUGGGCGUCUGGACAUCUGUAGCUGUCGUUUGGUUUGAUCUUGUUGACUAUGAGGAAGUUCUAGGAAAACUAGGAAUCUAUGAUGCUGAUGGUGAUGGAGAUUUUGAUGUGGAUGAUGCCAAAGUUUUAUUAGAGACAAAGCAUGGAGGACACAAGAAUGGGAGGAAAGGCGGACUCUCAGGA | circ |
| ENSG00000198363:-:8:61680967:61684188 | ENSG00000198363 | ENST00000517856 | - | 8 | 61680968 | 61684188 | 22 | AGUUUUAUUAGAGACAAAGCAU | bsj |
| ENSG00000198363:-:8:61680967:61684188 | ENSG00000198363 | ENST00000517856 | - | 8 | 61684179 | 61684388 | 210 | CAAAGUUAGUGUUGCAUCUAAACAAUCUUUUCUGUUUUCAGAAAUAUUUUGUGUGACGUGUUUUGAGAAUUUAACUGGAAACUGUUUUUGAAAUGAUCUAUCAUUGUACAUAAUCCCAAAUUAUUGGAGAAAUAAUUGUGAGAAUAAGUGUUCAGUAAAAUGUUUUCUUCUUAUGAUAUCUUACAUUUAUUUCUAAACAGAGACAAAGCA | ie_up |
| ENSG00000198363:-:8:61680967:61684188 | ENSG00000198363 | ENST00000517856 | - | 8 | 61680768 | 61680977 | 210 | GUUUUAUUAGGCAAGUACACAUUUUAUGUUUUUUGUUAGUGGUGAUAAAAUGCUGGAAACAAUUAUUUUUGCUUUAAUAAUAUCUAUCUCAAUAGUAUAUAUCUUACAGGAGACUUUUCUCCCUUAAAUCAUAUAUUUCAUUACUGUUAAAAUUUUAAAUGGCUUAUUUUUCCACACUCUUUCAUGUCAAUUUACUUUUAUCAAUGAAUA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBMY1A1 | 1 | 489 | 0.00913242 | 0.0007101099 | 3.684883 | ACAAGA | ACAAGA,CAAGAC |
| MATR3 | 1 | 739 | 0.00913242 | 0.0010724109 | 3.090139 | AUCUUG | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| NONO | 3 | 1498 | 0.01826484 | 0.0021723567 | 3.071736 | AGGAAC,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| SRP14 | 1 | 847 | 0.00913242 | 0.0012289250 | 2.893600 | CUGUAG | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| HNRNPAB | 3 | 1782 | 0.01826484 | 0.0025839306 | 2.821430 | ACAAAG,AGACAA,GACAAA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| SNRPB2 | 1 | 991 | 0.00913242 | 0.0014376103 | 2.667325 | AUUGCA | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| RBFOX1 | 1 | 1077 | 0.00913242 | 0.0015622419 | 2.547379 | AGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| PABPC3 | 1 | 1234 | 0.00913242 | 0.0017897669 | 2.351226 | GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| ZFP36L2 | 1 | 1277 | 0.00913242 | 0.0018520827 | 2.301849 | UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| MSI1 | 3 | 2770 | 0.01826484 | 0.0040157442 | 2.185330 | AGGAAG,UAGGAA | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| RBM3 | 2 | 2152 | 0.01369863 | 0.0031201361 | 2.134351 | AAAACU,AAACUA | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| LIN28A | 5 | 4315 | 0.02739726 | 0.0062547643 | 2.131004 | GGAGAU,GGAGGA,UGGAGA,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| YBX2 | 1 | 1480 | 0.00913242 | 0.0021462711 | 2.089165 | ACAUCU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| ZCRB1 | 1 | 1605 | 0.00913242 | 0.0023274215 | 1.972265 | GGUUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| G3BP2 | 1 | 1644 | 0.00913242 | 0.0023839405 | 1.937649 | GGAUGA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| DAZAP1 | 6 | 5964 | 0.03196347 | 0.0086445016 | 1.886569 | AGGAAA,AGGAAG,UAGGAA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| ELAVL1 | 5 | 5554 | 0.02739726 | 0.0080503280 | 1.766912 | UGGUUU,UUGGUU,UUUAUU,UUUGGU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| SRSF4 | 3 | 3740 | 0.01826484 | 0.0054214720 | 1.752313 | AGGAAG,GAGGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| HNRNPD | 2 | 2837 | 0.01369863 | 0.0041128408 | 1.735824 | UUAGAG,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| SFPQ | 22 | 24050 | 0.10502283 | 0.0348548043 | 1.591274 | AGGAAC,GAGGAA,GAGGAC,GGAGGA,GUCUGG,GUGAUG,GUGAUU,GUGGUU,UAGAGA,UCUGGA,UGAUGG,UGAUGU,UGAUUG,UGGAGA,UGGAGG,UGGUUU,UUGAUG,UUGGUU | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| HNRNPF | 9 | 10561 | 0.04566210 | 0.0153064921 | 1.576854 | AAGGCG,AGGAAG,AUGGGA,AUGUGG,GAGGAA,GGAGGA,GGGAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| ENOX1 | 2 | 3195 | 0.01369863 | 0.0046316558 | 1.564432 | AGGACA,UGGACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| HNRNPH1 | 9 | 10717 | 0.04566210 | 0.0155325680 | 1.555701 | AAGGCG,AGGAAG,AUGUGG,GAGGAA,GGAGGA,GGGAGG,GGGCGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| SRSF9 | 17 | 20254 | 0.08219178 | 0.0293536261 | 1.485455 | AGGAAA,AGGAAC,AGGACA,GAUGCC,GAUGGA,GGAAAA,GGAAAG,GGAGGA,GGGAGG,UGAUGC,UGAUGG,UGGAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| RBM46 | 3 | 4554 | 0.01826484 | 0.0066011240 | 1.468286 | AUGAUG,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| FXR2 | 2 | 3434 | 0.01369863 | 0.0049780156 | 1.460389 | AGACAA,GACAAA | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| SRSF7 | 11 | 14481 | 0.05479452 | 0.0209873716 | 1.384510 | AAGGCG,AGAGAC,AGGAAG,AGGACA,CUUCAC,GACAAA,GAGGAA,UAGAGA,UCUUCA,UGGACA | AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA |
| FUS | 2 | 3648 | 0.01369863 | 0.0052881452 | 1.373198 | UGGUGA | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| TRA2B | 5 | 7329 | 0.02739726 | 0.0106226650 | 1.366886 | AAGAAU,AGGAAA,AGGAAG | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| HNRNPH3 | 5 | 7688 | 0.02739726 | 0.0111429292 | 1.297903 | AUGUGG,GGAGGA,GGGAGG,GGGCGU | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| NOVA1 | 2 | 3872 | 0.01369863 | 0.0056127669 | 1.287248 | UCAUUC,UUCAUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| SART3 | 1 | 2634 | 0.00913242 | 0.0038186524 | 1.257934 | GAAAAC | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| TARDBP | 1 | 2654 | 0.00913242 | 0.0038476365 | 1.247025 | GAAUGG | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| HNRNPH2 | 6 | 9711 | 0.03196347 | 0.0140746688 | 1.183323 | AAGGCG,AUGUGG,GGAGGA,GGGAGG,GGGCGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| ELAVL3 | 1 | 2867 | 0.00913242 | 0.0041563169 | 1.135692 | UUUAUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| CELF6 | 1 | 2997 | 0.00913242 | 0.0043447134 | 1.071736 | GUGAUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPD | 1 | 12 | 0.09090909 | 0.000851454 | 6.738352 | UUAGAG | AAAAAA,AAUUUA,AGAUAU,AGUAGG,UUAGAG,UUAGGA,UUAGGG |
| NOVA2 | 1 | 15 | 0.09090909 | 0.001047943 | 6.438792 | GAGACA | ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC |
| PCBP2 | 1 | 26 | 0.09090909 | 0.001768405 | 5.683904 | UUAGAG | AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG |
| PCBP1 | 1 | 35 | 0.09090909 | 0.002357873 | 5.268867 | UUAGAG | AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG |
| HNRNPA1 | 2 | 119 | 0.13636364 | 0.007859576 | 4.116864 | AUUAGA,UAGAGA | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF7 | 2 | 128 | 0.13636364 | 0.008449044 | 4.012527 | AGAGAC,UAGAGA | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF10 | 2 | 160 | 0.13636364 | 0.010544931 | 3.692837 | AGAGAC,GAGACA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SFPQ | 1 | 153 | 0.09090909 | 0.010086455 | 3.172005 | UAGAGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF1 | 2 | 625 | 0.13636364 | 0.041000786 | 1.733736 | AGAGAC,GAGACA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| MATR3 | 3 | 216 | 0.009523810 | 0.001093309 | 3.122837 | AAUCUU,AUCUUA | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| AKAP1 | 3 | 221 | 0.009523810 | 0.001118501 | 3.089973 | AUAUAU,UAUAUA | AUAUAU,UAUAUA |
| SSB | 7 | 505 | 0.019047619 | 0.002549375 | 2.901395 | CUGUUU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| HNRNPA0 | 2 | 200 | 0.007142857 | 0.001012696 | 2.818299 | AAUUUA | AAUUUA,AGAUAU,AGUAGG |
| ERI1 | 2 | 228 | 0.007142857 | 0.001153769 | 2.630147 | UUCAGA,UUUCAG | UUCAGA,UUUCAG |
| HNRNPAB | 3 | 351 | 0.009523810 | 0.001773478 | 2.424957 | ACAAAG,AGACAA,GACAAA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| RBMS3 | 5 | 562 | 0.014285714 | 0.002836558 | 2.332360 | AUAUAU,CAUAUA,UAUAUA,UAUAUC | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| RBM41 | 4 | 502 | 0.011904762 | 0.002534260 | 2.231902 | UACAUU,UACUUU,UUACAU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| CSTF2 | 9 | 1022 | 0.023809524 | 0.005154172 | 2.207726 | GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| RBMS1 | 1 | 217 | 0.004761905 | 0.001098347 | 2.116204 | UAUAUA | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| ZFP36L2 | 6 | 774 | 0.016666667 | 0.003904676 | 2.093691 | AUUUAU,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| A1CF | 4 | 598 | 0.011904762 | 0.003017936 | 1.979904 | AGUAUA,AUAAUU,UAAUUG,UCAGUA | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| RBM46 | 8 | 1091 | 0.021428571 | 0.005501814 | 1.961556 | AAUCAU,AAUGAA,AAUGAU,AUCAAU,AUCAUA,AUCAUU,AUGAAU,AUGAUA | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| PUM2 | 5 | 764 | 0.014285714 | 0.003854293 | 1.890035 | GUACAU,GUAUAU,UACAUA,UAUAUA,UGUACA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| PUM1 | 14 | 2172 | 0.035714286 | 0.010948206 | 1.705807 | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AUUGUA,GUACAU,GUAUAU,UAAUAU,UACAUA,UAUAUA,UGUACA,UUGUAC,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| TIA1 | 34 | 5140 | 0.083333333 | 0.025901854 | 1.685838 | AUUUUG,AUUUUU,CUUUUA,CUUUUC,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUC,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| TIAL1 | 37 | 5597 | 0.090476190 | 0.028204353 | 1.681620 | AAAUUU,AAUUUU,AUUUUA,AUUUUG,AUUUUU,CUUUUA,CUUUUC,GUUUUC,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUC,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| ELAVL3 | 12 | 1928 | 0.030952381 | 0.009718863 | 1.671191 | AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| QKI | 5 | 904 | 0.014285714 | 0.004559653 | 1.647577 | AAUCAU,AUCAUA,AUCUAA,CACACU,UCAUAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| PPIE | 55 | 9262 | 0.133333333 | 0.046669690 | 1.514480 | AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAAUU,AUAUAU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAUAA,UAAUAU,UAUAUA,UAUAUU,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| HNRNPD | 8 | 1488 | 0.021428571 | 0.007502015 | 1.514186 | AAUUUA,AUUUAU,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| ELAVL1 | 19 | 3309 | 0.047619048 | 0.016676743 | 1.513701 | AUUUAU,UAUUUU,UGUUUU,UUAUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| CELF5 | 3 | 669 | 0.009523810 | 0.003375655 | 1.496371 | GUGUUG,GUGUUU,UGUGUG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| ELAVL2 | 56 | 9826 | 0.135714286 | 0.049511286 | 1.454743 | AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUA,GUUUUA,GUUUUC,GUUUUU,UACUUU,UAUAUA,UAUAUU,UAUGUU,UAUUUU,UCUUAU,UCUUUU,UUACUU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUUAAU,UUUACU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUC,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RBM3 | 2 | 541 | 0.007142857 | 0.002730754 | 1.387202 | GAAACU,GAGACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| ELAVL4 | 15 | 2916 | 0.038095238 | 0.014696695 | 1.374119 | AUCUAA,AUUUAU,UAUCUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| RALY | 5 | 1117 | 0.014285714 | 0.005632809 | 1.342647 | UUUUUC,UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| CELF4 | 3 | 776 | 0.009523810 | 0.003914752 | 1.282618 | GUGUUG,GUGUUU,UGUGUG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| HNRNPCL1 | 6 | 1381 | 0.016666667 | 0.006962918 | 1.259202 | AUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| SAMD4A | 3 | 790 | 0.009523810 | 0.003985288 | 1.256855 | CUGGAA,GCUGGA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| PABPC5 | 2 | 596 | 0.007142857 | 0.003007860 | 1.247764 | AGAAAU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| RC3H1 | 2 | 631 | 0.007142857 | 0.003184200 | 1.165570 | UCCCUU,UUCUGU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| CELF2 | 3 | 881 | 0.009523810 | 0.004443773 | 1.099754 | UAUGUU,UGUGUG,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| ZCRB1 | 2 | 666 | 0.007142857 | 0.003360540 | 1.087808 | AUUUAA,GGCUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| LIN28A | 3 | 900 | 0.009523810 | 0.004539500 | 1.069005 | AGGAGA,GGAGAA,UGGAGA | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.