ENSG00000153786:-:16:84990303:84996007

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000153786:-:16:84990303:84996007 ENSG00000153786 ENST00000313732 - 16 84990304 84996007 418 AUCCGAUCACAUAGGACAGUAUGCACCUUAAGAUCCUGAAGAAACGGCACAAAAUGUUCAAGUGAUGUUUAGAAAUAACUUGUGAGGGUGCGUCAGGGAAAUCAUGCAGCCAUCAGGACACAGGCUCCGGGACGUCGAGCAUCAUCCUCUCCUGGCUGAAAAUGACAACUAUGACUCUUCAUCGUCCUCCUCCUCCGAGGCUGACGUGGCUGACCGGGUCUGGUUCAUCCGUGACGGCUGCGGCAUGAUCUGUGCUGUCAUGACGUGGCUUCUGGUCGCCUAUGCAGACUUCGUGGUGACUUUCGUCAUGCUGCUGCCUUCCAAAGACUUCUGGUACUCUGUGGUCAACGGGGUCAUCUUUAACUGCUUGGCCGUGCUUGCCCUGUCAUCCCACCUGAGAACCAUGCUCACCGACCCUAUCCGAUCACAUAGGACAGUAUGCACCUUAAGAUCCUGAAGAAACGGCAC circ
ENSG00000153786:-:16:84990303:84996007 ENSG00000153786 ENST00000313732 - 16 84990304 84996007 22 UCACCGACCCUAUCCGAUCACA bsj
ENSG00000153786:-:16:84990303:84996007 ENSG00000153786 ENST00000313732 - 16 84995998 84996207 210 UACUUGAUUUCCAGGAUUGUGAAUUUACCUAGUAAUCAAAACUUAGAAGAGCAAUGAUUUCAUACUUAAGGAUAGUUCUGAGUGACAGAACUUGAUGCGUCAAAUGUUACGCUCCAAAAAUUAAUCAUACCCUAAGAAAUAUGACACACGUCUGUCAUAAAAUAAAUCACUUUUUCUAAUCAGAUUUUAUUACCUUUCAGAUCCGAUCAC ie_up
ENSG00000153786:-:16:84990303:84996007 ENSG00000153786 ENST00000313732 - 16 84990104 84990313 210 CACCGACCCUGUGAGUACUGGCUGCGUCUCUGGGUGGCUCUCUUGUGUCUGGUCUAGUGUCCUCGGGUGUGGCUGACCCUUUGGAGGAAGCAGUGCACAGGGACAUAUUGACAUGGGUGUGGAACAAGAAAGGUGGAUUGAGCUCAUUUUGGGAGCAGAUUCCCUUUAGGCUGAGAAUAAACAUAGGCCAGACCUAGCGCAGUGAAAUAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 2 411 0.007177033 0.000597072 3.587411 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RC3H1 4 1786 0.011961722 0.002589727 2.207553 CUUCUG,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
MATR3 1 739 0.004784689 0.001072411 2.157567 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRNP70 2 1237 0.007177033 0.001794114 2.000116 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF6 5 2997 0.014354067 0.004344713 1.724127 GUGAGG,GUGAUG,GUGGUG,UGUGAG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
NELFE 5 3028 0.014354067 0.004389639 1.709285 CUGGCU,CUGGUU,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBFOX1 1 1077 0.004784689 0.001562242 1.614807 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPAB 2 1782 0.007177033 0.002583931 1.473820 AAAGAC,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SF1 7 4931 0.019138756 0.007147474 1.420992 ACCGAC,CACCGA,GCUGAC,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SSB 1 1260 0.004784689 0.001827446 1.388596 UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
YTHDC1 7 5576 0.019138756 0.008082210 1.243675 GGCUGC,GGGUGC,UCAUGC,UGCUGC,UGGUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBM3 2 2152 0.007177033 0.003120136 1.201779 AAGACU,GAAACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
YBX2 1 1480 0.004784689 0.002146271 1.156593 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
MBNL1 16 13372 0.040669856 0.019380204 1.069376 AUGCUC,CUGCCU,CUGCGG,CUGCUG,CUGCUU,CUUGUG,GCUGCG,GCUGCU,GCUUGC,GUGCUG,GUGCUU,UGCGGC,UGCUGC,UGCUGU,UUGCCC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
SRSF3 20 16536 0.050239234 0.023965486 1.067856 ACUUCG,ACUUCU,AUCAUC,CAUCAU,CAUCGU,CUCUUC,CUUCAU,GACUUC,GUCAAC,UCAACG,UCAUCC,UCAUCG,UCAUCU,UCGUCC,UCUUCA,UUCAUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
SAMD4A 4 3992 0.011961722 0.005786671 1.047620 CGGGAC,CGGGUC,CUGGUA,CUGGUC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ENOX1 3 3195 0.009569378 0.004631656 1.046897 AGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC5 2 2400 0.007177033 0.003479539 1.044492 AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 1 1642 0.004784689 0.002381042 1.006832 CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PCBP1 2 35 0.13636364 0.002357873 5.853829 CCUAUC,CUAUCC AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG
PCBP2 1 26 0.09090909 0.001768405 5.683904 ACCCUA AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
G3BP2 5 490 0.014285714 0.0024738009 2.529772 AGGAUA,AGGAUU,GGAUAG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
QKI 8 904 0.021428571 0.0045596534 2.232540 AAUCAU,ACACAC,AUCAUA,CUAAUC,UAAUCA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AGAAGA,AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAGAAA,AGAAAG,AGAAGA,AGGAAG,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
NELFE 6 1059 0.016666667 0.0053405885 1.641895 CUCUCU,CUCUGG,CUGGCU,GUCUCU,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUG,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUCAA,AAUCAU,AAUGAU,AUCAAA,AUCAUA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM24 4 888 0.011904762 0.0044790407 1.410277 GAGUGA,GUGUGG,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,AAAUAC,AAUAAA,ACACAC,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GAGUAC,GGCUGC,UCAUAC,UGAUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,AUAAAA,AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AGAAGA,AGGAAG,CACGUC,GAGGAA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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