ENSG00000106443:+:7:10982371:11022979

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000106443:+:7:10982371:11022979 ENSG00000106443 ENST00000403050 + 7 10982372 11022979 1205 AUUCUGAAGGGAGUGGUAAUGGAAGUGAAGAUGCUUCAAAGGACAGUGGAGAAGGUUCCUGUAGUGAUUCUGAAGAAAAUAUUUUAGAAGAAGAACUGAAUGAAGAUAUUAAAGUAAAAGAAGAACAACUUAAAAAUUCUGCAGAGGAAGAAGUACUAUCAUCAGAAAAACAAUUAAUUAAAAUGGAAAAGAAGGAAGAAGAAGAAAAUGGAGAAAGACCUAGAAAGAAAAAGGAGAAAGAGAAGGAAAAAGAAAAGGAAAAGGAGAAAGAGAAGGAAAGAGAGAAGGAAAAAGAAAAAGCAACAGUAUCUGAGAAUGUGGCUGCUUCUGCUGCUGCCACCACACCAGCCACAAGUCCUCCUGCUGUUAACACAUCCCCUUCUGUUCCCACUACGACAACCGCUACAGAGGAACAAGUCAGCGAGCCAAAAAAAUGGAACCUUCGACGAAACCGACCACUUCUGGAUUUUGUGUCCAUGGAAGAGCUGAAUGACAUGGAUGACUAUGACAGUGAGGAUGACAAUGAUUGGCGACCUACUGUAGUAAAGAGAAAAGGGAGAUCUGCGUCUCAGAAAGAGGGAAGUGAUGGAGACAAUGAGGAUGAUGAAGAUGAGGGAAGCGGGAGUGAUGAAGACGAGAAUGAUGAAGGCAAUGAUGAAGAUCAUAGUAGCCCUGCCAGUGAAGGGGGUUGCAAGAAGAAGAAGAGUAAAGUUCUUAGCAGAAACAGUGCUGAUGAUGAGGAACUGACCAAUGAUAGCCUGACCCUAUCUCAAAGCAAGAGUAAUGAGGACUCGCUGAUUCUUGAGAAGAGUCAAAACUGGAGCUCUCAAAAAAUGGACCAUAUUCUGAUUUGCUGUGUUUGUCUGGGAGAUAAUAGUGAGGACGCUGAUGAAAUAAUUCAGUGUGACAAUUGUGGCAUUACAGUCCAUGAAGGUUGUUAUGGAGUUGAUGGAGAGAGUGACUCUAUUAUGAGUUCAGCUUCUGAAAACUCCACUGAACCUUGGUUUUGUGAUGCCUGUAAAUGUGGUGUUUCUCCUAGCUGUGAACUGUGUCCUAAUCAGGAUGGAAUUUUCAAGGAGACAGAUGCUGGAAGAUGGGUUCAUAUUGUUUGUGCCCUGUAUGUUCCUGGAGUAGCCUUUGGAGAUAUUGACAAAUUACGACCAGUAACACUAACGGAAAUGAACUAUUCCAAAUAUGGUGCCAAGAUUCUGAAGGGAGUGGUAAUGGAAGUGAAGAUGCUUCAAAGGACAGUGGA circ
ENSG00000106443:+:7:10982371:11022979 ENSG00000106443 ENST00000403050 + 7 10982372 11022979 22 AUGGUGCCAAGAUUCUGAAGGG bsj
ENSG00000106443:+:7:10982371:11022979 ENSG00000106443 ENST00000403050 + 7 10982172 10982381 210 GAACUAAAACCAUUGUAUCAACUUCAUUGAUUUAUUAUUUGAUCAGGUUGGGAAUGUCUACCAUUCUUUGACUUAAAUUUGUUUAUAUUGUUUUGCAAGUUAUUCACAAAUUUUGGUGGUUUCAUUUGUGUCAGCGUUGUGUGUGUGUGUGUGUAUGUAUAUACAUAUGUGUGGUUUUUUUUUUCUCAUAUUUUCAACAGAUUCUGAAGG ie_up
ENSG00000106443:+:7:10982371:11022979 ENSG00000106443 ENST00000403050 + 7 11022970 11023179 210 UGGUGCCAAGGUGAGACACAAAGCAUUUUUGAUUGCUUGAAAGAGAAAGGUUUUACUUGUUAGUUUACCUGGCUUUUUAUUUGUAUUAUGUUGACUGCAGAAAUGCUUACUAGGAAUCAUUCUAUUUAGCACUAAAUCAUUUAUUAUUGAUAGUAGUUUUCCUAGAAAGCCAAUAAUGCAUAAAUUCUUCUAUACAUUCUUAAUUUAGAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 9 688 0.008298755 0.0009985015 3.055058 AAGAAG AAGAAG
FXR1 4 411 0.004149378 0.0005970720 2.796918 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PABPN1 13 1222 0.011618257 0.0017723764 2.712637 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRSF4 37 3740 0.031535270 0.0054214720 2.540210 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPM 9 999 0.008298755 0.0014492040 2.517634 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TRA2A 60 6871 0.050622407 0.0099589296 2.345714 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ANKHD1 2 339 0.002489627 0.0004927293 2.337062 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
TRA2B 61 7329 0.051452282 0.0106226650 2.276089 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRP14 6 847 0.005809129 0.0012289250 2.240925 CCUGUA,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SART3 17 2634 0.014937759 0.0038186524 1.967828 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA0 2 453 0.002489627 0.0006579386 1.919905 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMX 31 4925 0.026556017 0.0071387787 1.895290 AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,AGUAAC,AUCCCC,GAAGGA,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PABPC4 7 1251 0.006639004 0.0018144033 1.871472 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM46 28 4554 0.024066390 0.0066011240 1.866236 AAUGAA,AAUGAU,AUCAUA,AUGAAA,AUGAAG,AUGAUA,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CNOT4 1 314 0.001659751 0.0004564992 1.862282 GACAGA GACAGA
PABPC5 14 2400 0.012448133 0.0034795387 1.838961 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SRSF10 85 13860 0.071369295 0.0200874160 1.829012 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,AGACAA,AGAGAA,AGAGAG,AGAGGA,AGAGGG,GAAAGA,GACAAA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGGAA,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
NONO 7 1498 0.006639004 0.0021723567 1.611706 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF7 71 14481 0.059751037 0.0209873716 1.509442 AAAGGA,AAGAAG,AAGGAC,AAUGAU,ACGAGA,ACUACG,AGAAGA,AGACGA,AGAGAA,AGAGAG,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUUGAC,CGACGA,CUACGA,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAG,GAGAGA,GAGAUC,GAGGAA,UACGAC AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
PABPC1 21 4443 0.018257261 0.0064402624 1.503279 AAAAAA,AAAAAC,ACAAAU,ACUAAC,AGAAAA,CAAAUA,CUAAUC,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
IGHMBP2 3 813 0.003319502 0.0011796520 1.492606 AAAAAA AAAAAA
RBM42 1 407 0.001659751 0.0005912752 1.489065 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
G3BP2 7 1644 0.006639004 0.0023839405 1.477619 AGGAUG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 3 822 0.003319502 0.0011926949 1.476742 GAGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRSF5 42 8869 0.035684647 0.0128544391 1.473037 AAGAAG,AGAAGA,AGGAAG,CAACAG,CACAUC,GAAGAA,GAGGAA,GGAAGA,UACAGA,UGCAGA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
ACO1 5 1283 0.004979253 0.0018607779 1.420024 CAGUGA,CAGUGC,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RC3H1 7 1786 0.006639004 0.0025897275 1.358167 CCCUUC,CCUUCU,CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
LIN28A 18 4315 0.015767635 0.0062547643 1.333939 AGGAGA,GGAGAA,GGAGAU,GGAGUA,UGGAGA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM5 27 6879 0.023236515 0.0099705232 1.220653 AAAAAA,AAGGAA,AAGGAG,AAGGGG,AGGGAA,AGGGAG,CAAGGA,GAAGGA,GAAGGG,GAAGGU,GAGGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
AGO2 6 1830 0.005809129 0.0026534924 1.130429 AAAAAA,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
FXR2 12 3434 0.010788382 0.0049780156 1.115836 AGACAA,AGACAG,AGACGA,GACAAA,GACAGA,GACGAA,GACGAG,GGACAG,UGACAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
TARDBP 9 2654 0.008298755 0.0038476365 1.108922 GAAUGA,GAAUGU,GUUGUU,GUUUUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPA2B1 31 8607 0.026556017 0.0124747476 1.090028 AAGAAG,AAGGAA,AAGGAG,AAGGGG,AGAUAU,AGGAAC,CAAGAA,CAAGGA,CCAAGA,GAAGGA,GCCAAG,GGAACC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
AGO1 1 548 0.001659751 0.0007956130 1.060828 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CSTF2 6 1967 0.005809129 0.0028520334 1.026331 GUGUUU,GUUUUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA2B1 1 49 0.09090909 0.003274823 4.794936 CCAAGA AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
CELF2 19 881 0.047619048 0.0044437727 3.421682 AUGUGU,GUAUGU,GUGUGU,UAUGUG,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 14 669 0.035714286 0.0033756550 3.403262 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 14 776 0.035714286 0.0039147521 3.189508 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
TARDBP 17 1034 0.042857143 0.0052146312 3.038899 GAAUGU,GUGUGU,GUUGUG,GUUUUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBM24 14 888 0.035714286 0.0044790407 2.995240 GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
CSTF2 15 1022 0.038095238 0.0051541717 2.885798 GUGUGU,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF1 16 1097 0.040476190 0.0055320435 2.871189 GUGUGU,GUUGUG,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM41 5 502 0.014285714 0.0025342604 2.494937 AUACAU,UACAUU,UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZFP36L2 8 774 0.021428571 0.0039046755 2.456261 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
ELAVL1 28 3309 0.069047619 0.0166767432 2.049754 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CPEB4 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
CELF6 9 1196 0.023809524 0.0060308343 1.981109 GUGUGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
KHSRP 44 5764 0.107142857 0.0290457477 1.883137 AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 7 1071 0.019047619 0.0054010480 1.818299 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAUUUA,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUUUA,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ELAVL2 68 9826 0.164285714 0.0495112858 1.730378 AAUUUA,AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUAG,AUUUAU,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUUU,GAUUUA,GUUUUA,GUUUUC,GUUUUU,UAAUUU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UGAUUU,UGUAUU,UUAAUU,UUACUU,UUAGUU,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUACU,UUUAUA,UUUAUU,UUUCAU,UUUGAU,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUCAAC,UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAG,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 GAUCAG,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,CACUAA,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAUAU,UACAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AUCAAC,CCUAGA,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 ACUUAA,GACUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 UUUUUU AAAAAA,UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 CUAAAA,CUAAAU,UAAAAC,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 29 5597 0.071428571 0.0282043531 1.340583 AAAUUU,AAUUUU,AGUUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUC,AUUUUG,AUUUUU,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 CGUUGU,GGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PPIE 40 9262 0.097619048 0.0466696896 1.064677 AAAUUU,AAUAAU,AAUUUA,AAUUUU,AUAAAU,AUAUUU,AUUAUU,AUUUAU,AUUUUU,UAAAUU,UAAUUU,UAUAUA,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAU,UUAAUU,UUAUAU,UUAUUA,UUAUUU,UUUAUA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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