ENSG00000115484:-:2:61872081:61883548

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000115484:-:2:61872081:61883548 ENSG00000115484 ENST00000394440 - 2 61872082 61883548 1311 AUUCAAGAUGGAAAAGGUGAUGUAACCAUUACAAAUGAUGGUGCUACCAUUCUGAAACAAAUGCAAGUAUUACAUCCAGCAGCCAGAAUGCUGGUGGAGCUGUCUAAGGCUCAAGAUAUAGAAGCAGGAGAUGGCACCACAUCAGUAGUCAUCAUUGCUGGCUCCCUCUUAGAUUCUUGUACCAAGCUUCUUCAGAAAGGGAUUCAUCCAACCAUCAUUUCUGAGUCAUUCCAGAAGGCCCUGGAAAAGGGCAUUGAAAUCUUGACUGACAUGUCUCGACCUGUGGAACUGAGUGACAGAGAAACUUUGUUAAAUAGUGCAACCACUUCACUGAACUCAAAGGUGGUUUCUCAGUAUUCAAGUCUGCUUUCUCCAAUGAGUGUAAAUGCAGUGAUGAAAGUGAUUGACCCAGCCACAGCCACCAGUGUAGAUCUUAGAGAUAUUAAAAUAGUUAAGAAGCUUGGUGGGACAAUUGAUGACUGUGAGUUGGUGGAAGGGCUGGUUCUCACCCAAAAAGUGUCAAAUUCUGGCAUAACCAGAGUUGAAAAGGCCAAGAUUGGGCUUAUUCAGUUUUGCUUAUCUGCUCCCAAAACAGACAUGGAUAAUCAAAUAGUGGUUUCUGACUAUGCCCAGAUGGACCGAGUGCUGCGAGAAGAGAGAGCCUAUAUUUUAAAUUUAGUGAAGCAAAUUAAAAAAACAGGAUGUAAUGUCCUUCUCAUACAGAAAUCUAUUCUAAGAGAUGCUCUUAGUGAUCUUGCAUUACACUUUCUGAAUAAAAUGAAGAUCAUGGUGAUUAAGGAUAUUGAAAGAGAAGACAUUGAAUUCAUUUGUAAGACAAUUGGAACCAAGCCAGUUGCUCAUAUUGACCAAUUUACUGCUGACAUGCUGGGUUCUGCUGAGUUAGCUGAGGAGGUCAAUUUAAAUGGUUCUGGCAAACUGCUCAAGAUUACAGGCUGUGCCAGCCCUGGAAAAACAGUUACAAUUGUUGUUCGUGGUUCUAACAAACUGGUGAUUGAAGAAGCUGAGCGCUCCAUUCAUGAUGCCCUAUGUGUUAUUCGUUGUUUAGUGAAGAAGAGGGCUCUUAUUGCAGGAGGUGGUGCUCCAGAAAUAGAGUUGGCCCUACGAUUAACUGAAUAUUCACGAACACUGAGUGGUAUGGAAUCCUACUGCGUUCGUGCUUUUGCAGAUGCUAUGGAGGUCAUUCCAUCUACACUAGCUGAAAAUGCCGGCCUGAAUCCCAUUUCUACAGUAACAGAACUAAGAAACCGGCAUGCCCAGGGAGAAAAAACUGCAGGCAUUAAUGUCCGAAAGAUUCAAGAUGGAAAAGGUGAUGUAACCAUUACAAAUGAUGGUGCUACCAU circ
ENSG00000115484:-:2:61872081:61883548 ENSG00000115484 ENST00000394440 - 2 61872082 61883548 22 AUGUCCGAAAGAUUCAAGAUGG bsj
ENSG00000115484:-:2:61872081:61883548 ENSG00000115484 ENST00000394440 - 2 61883539 61883748 210 CCUGCAACAAAGCCACUUUUUUCUUUUGUAAAGUUGGACUGUUAUUGCGUAUUCUUAAACUAUUAUGCUAAUGUAAGGGAAGAGAAUUUAAAAUUAAGUACUUUGCAAACAGAAAUUAACUUCUCUAUUUUGAAAUGUAAAAGUUUAAUAAAACUAUUAAGGUGUGACAUUGAAAUAUAACUUUAAAAUUUUUUUUCUAGAUUCAAGAUG ie_up
ENSG00000115484:-:2:61872081:61883548 ENSG00000115484 ENST00000394440 - 2 61871882 61872091 210 UGUCCGAAAGGUAAUCAUUUAAUCUCUAAUGUAGAAAAUAUUGAUUAAUUUAAAAUAUUAAAAGCUUUGUAGUCAUCUGUUGAAUGGAAAGCUCUGUAAUGAAAAGCAUAAUCUUGGAUUUAAAUAUGAGGCCUGCUGCAUGUUAAUUAAUCUAUGCCAUUGAGUGAGAAGGAAGAUGGUGACACCUUAGGGGGAAGUAUUAUUUGUUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001525553 0.0001130379 3.754454 GCAUAA GCAUAA
HNRNPA0 5 453 0.004576659 0.0006579386 2.798270 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
ESRP1 1 156 0.001525553 0.0002275250 2.745235 AGGGAU AGGGAU
ZNF638 13 1773 0.010678871 0.0025708878 2.054421 CGUUCG,CGUUGU,GGUUCU,GUUCGU,GUUGGU,GUUGUU,UGUUCG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM42 2 407 0.002288330 0.0005912752 1.952393 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
MATR3 4 739 0.003813883 0.0010724109 1.830403 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBFOX2 2 452 0.002288330 0.0006564894 1.801451 UGACUG UGACUG,UGCAUG
CNOT4 1 314 0.001525553 0.0004564992 1.740648 GACAGA GACAGA
SNRPB2 5 991 0.004576659 0.0014376103 1.670622 AUUGCA,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 2 497 0.002288330 0.0007217036 1.664817 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRSF11 3 688 0.003051106 0.0009985015 1.611496 AAGAAG AAGAAG
PABPC3 6 1234 0.005339436 0.0017897669 1.576916 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
IGHMBP2 3 813 0.003051106 0.0011796520 1.370971 AAAAAA AAAAAA
RBM28 3 822 0.003051106 0.0011926949 1.355107 AGUAGU,GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 5 1237 0.004576659 0.0017941145 1.351023 AAUCAA,AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM6 4 1054 0.003813883 0.0015289102 1.318757 AUCCAA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
AGO2 7 1830 0.006102212 0.0026534924 1.201440 AAAAAA,AAAGUG,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC4 4 1251 0.003813883 0.0018144033 1.071765 AAAAAA,AAAAAG AAAAAA,AAAAAG
PABPC1 16 4443 0.012967201 0.0064402624 1.009676 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,AGAAAA,CAAAUA,CGAACA,CUAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TRA2B 1 51 0.09090909 0.003405816 4.738352 GAAAGA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
TRA2A 1 54 0.09090909 0.003602305 4.657432 GAAAGA AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 1 160 0.09090909 0.010544931 3.107875 GAAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GAAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
EIF4B 3 226 0.009523810 0.0011436921 3.057840 CUUGGA,GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZCRB1 10 666 0.026190476 0.0033605401 2.962277 AAUUAA,AUUUAA,GAUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
KHDRBS1 17 1945 0.042857143 0.0098045143 2.128018 AUAAAA,AUUUAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PPIE 64 9262 0.154761905 0.0466696896 1.729493 AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAA,AUAUAA,AUAUUA,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUUU,UAAAAU,UAAAUA,UAAUAA,UAAUUA,UAAUUU,UAUUAA,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUUU,UUUAAA,UUUAAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAUAAA,AUAAAA,AUUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 UAAAUA,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AGAAUU,UAAAUA,UAAUGU,UGUAAA,UGUAAU,UGUAGA,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
QKI 4 904 0.011904762 0.0045596534 1.384543 AAUCAU,AUUAAC,UAAUCA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAG,GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPA2B1 9 2033 0.023809524 0.0102478839 1.216213 AAGGAA,AAUUUA,AUUUAA,GAAGGA,UUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGUCAU,CUAGAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AAUGAA,AUCAUU,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GAGUGA,GUGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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