ENSG00000159140:+:21:33546212:33555391

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000159140:+:21:33546212:33555391 ENSG00000159140 MSTRG.21290.1 + 21 33546213 33555391 6083 UGGAAGGAAUGAAGGCCAGCUGAAUGGUGAAACAAAUACACCCAUUGAAGGAAACCAGGCGGGUGAUGCAGCUGCCUCUGCCAGGAGUCUACCAAAUGAAGAAAUAGUGCAGAAGAUAGAGGAAGUACUUUCUGGGGUCUUAGAUACAGAACUACGAUAUAAGCCAGACUUGAAAGAGGGCUCCAGAAAAAGUAGAUGCGUAUCUGUACAAACAGAUCCUACUGAUGAAAUUCCCACUAAAAAGUCAAAGAAGCAUAAAAAGCACAAAAACAAAAAGAAGAAAAAGAAGAAAGAAAAGGAAAAAAAAUAUAAAAGACAGCCAGAAGAAUCUGAGUCAAAGACGAAAUCUCAUGAUGAUGGGAACAUAGAUUUAGAAUCUGAUUCCUUUUUAAAGUUUGAUUCUGAACCUUCAGCUGUGGCGCUGGAGCUUCCUACAAGAGCAUUUGGCCCAUCUGAGACCAAUGAAUCCCCUGCAGUUGUGCUAGAACCUCCUGUAGUAUCAAUGGAGGUAUCAGAGCCACACAUCUUAGAAACUCUGAAGCCAGCUACAAAAACUGCAGAACUGUCAGUUGUAUCUACAUCAGUAAUCUCAGAGCAGUCAGAGCAGUCUGUGGCAGUAAUGCCAGAACCAUCCAUGACAAAGAUUCUGGAUUCCUUUGCAGCAGCACCAGUGCCUACUACAACACUGGUGUUGAAGUCAUCUGAGCCAGUUGUAACAAUGUCAGUGGAGUAUCAGAUGAAGUCUGUGCUGAAAUCUGUGGAGAGCACAUCUCCAGAGCCAUCAAAGAUCAUGUUGGUAGAGCCCCCAGUAGCAAAAGUGUUAGAGCCUUCAGAAACCCUUGUGGUAUCAUCAGAGACACCUACUGAGGUGUACCCUGAGCCAAGCACAUCAACAACAAUGGAUUUUCCAGAGUCAUCUGCAAUUGAAGCGCUAAGAUUGCCAGAGCAGCCUGUAGACGUACCAUCGGAGAUUGCAGAUUCAUCCAUGACAAGACCGCAGGAGUUGCCGGAGCUGCCUAAGACCACAGCGUUGGAGCUGCAGGAGUCGUCGGUGGCCUCAGCGAUGGAGUUGCCGGGGCCACCUGCGACCUCCAUGCCGGAGUUGCAGGGGCCCCCUGUGACUCCAGUGCUGGAGUUACCUGGGCCCUCUGCUACCCCGGUGCCAGAGUUGCCAGGGCCCCUUUCUACCCCAGUGCCUGAGUUGCCAGGGCCCCCUGCGACAGCAGUGCCUGAGUUGCCAGGGCCCUCUGUGACACCAGUGCCACAGUUGUCGCAGGAAUUGCCAGGGCUUCCAGCACCAUCCAUGGGGUUGGAGCCACCACAGGAGGUACCAGAGCCACCUGUGAUGGCACAGGAGUUGCCAGGGCUGCCUUUGGUGACAGCAGCAGUAGAGUUGCCAGAGCAGCCUGCGGUAACAGUAGCAAUGGAGUUGACCGAACAACCUGUGACGACGACAGAGUUGGAGCAGCCUGUGGGGAUGACAACGGUGGAACAUCCUGGGCAUCCUGAGGUGACAACGGCAACAGGGUUGCUGGGGCAGCCUGAGGCAACGAUGGUGCUGGAGUUGCCAGGACAGCCAGUGGCAACGACAGCGCUGGAGUUGCCGGGGCAGCCUUCGGUGACUGGGGUGCCAGAGUUGCCAGGGCUGCCUUCGGCAACUAGGGCACUGGAGUUGUCGGGGCAGCCUGUGGCAACUGGGGCACUAGAGUUGCCUGGGCCGCUCAUGGCAGCUGGGGCACUGGAGUUCUCGGGGCAGUCUGGGGCAGCUGGAGCACUGGAGCUUUUGGGGCAGCCUCUGGCAACAGGGGUGCUGGAGUUGCCAGGGCAGCCUGGGGCGCCAGAGUUGCCUGGGCAGCCUGUGGCAACUGUGGCGCUGGAGAUCUCUGUUCAGUCUGUGGUGACAACAUCGGAGCUGUCAACGAUGACCGUGUCGCAGUCCCUGGAGGUGCCCUCGACGACAGCGCUGGAAUCCUAUAAUACGGUAGCACAGGAGCUGCCUACUACAUUAGUGGGGGAGACUUCUGUAACAGUAGGAGUGGAUCCCUUGAUGGCCCCAGAAUCCCAUAUAUUAGCUUCUAACACCAUGGAGACCCAUAUAUUAGCAUCCAACACCAUGGACUCCCAAAUGCUAGCGUCCAACACCAUGGACUCCCAGAUGCUAGCAUCCAACACCAUGGACUCCCAGAUGUUAGCGUCUAGCACCAUGGACUCCCAGAUGUUAGCAACUAGCUCCAUGGACUCCCAGAUGUUAGCAACUAGCUCCAUGGACUCCCAGAUGUUAGCAACUAGCACUAUGGACUCCCAGAUGUUAGCAACCAGUUCCAUGGACUCCCAGAUGUUAGCAACCAGCUCCAUGGACUCCCAGAUGUUAGCAACCAGCUCCAUGGACUCCCAGAUGUUAGCAACCAGCUCCAUGGACUCCCAGAUGUUAGCAACCAGCACCAUGGAUUCUCAGAUGUUAGCAACCAGCACCAUGGACUCCCAGAUGUUAGCAACUAGCUCAAUGGAUUCCCAGAUGUUAGCAUCUGGCACUAUGGACUCUCAAAUGUUAGCUUCUGGCACCAUGGAUGCUCAGAUGUUAGCGUCUGGUACCAUGGAUGCCCAGAUGUUAGCGUCUAGUACCCAAGAUUCUGCUAUGUUGGGUUCAAAAUCUCCUGAUCCCUAUAGGUUAGCUCAGGAUCCUUACAGGUUAGCUCAGGAUCCCUAUAGGUUGGGCCAUGACCCCUAUAGAUUAGGUCAUGAUGCUUACAGGUUAGGACAAGACCCUUAUAGAUUAGGCCAUGAUCCCUACAGACUAACUCCUGAUCCCUAUAGGAUGUCACCUAGACCCUACAGGAUAGCACCCAGGUCCUAUAGAAUAGCACCCAGGCCAUAUAGGUUAGCACCUAGACCCCUGAUGUUAGCAUCUAGACGUUCUAUGAUGAUGUCCUAUGCUGCAGAACGUUCCAUGAUGUCAUCUUACGAACGCUCUAUGAUGUCUUAUGAGCGGUCUAUGAUGUCCCCUAUGGCUGAACGCUCUAUGAUGUCAGCCUACGAGCGCUCUAUGAUGUCAGCCUACGAGCGCUCUAUGAUGUCCCCUAUGGCUGAGCGCUCUAUGAUGUCAGCUUAUGAACGCUCCAUGAUGUCAGCUUAUGAACGCUCCAUGAUGUCCCCAAUGGCUGAUCGAUCUAUGAUGUCCAUGGGUGCUGACCGGUCUAUGAUGUCGUCAUACUCUGCUGCUGACCGGUCUAUGAUGUCAUCGUACUCUGCAGCUGACCGAUCUAUGAUGUCAUCUUAUACUGCUGAUCGUUCAAUGAUGUCUAUGGCUGCUGAUUCUUACACCGAUUCUUACACUGACACAUAUACAGAGGCAUAUAUGGUGCCACCUUUGCCUCCUGAAGAGCCCCCAACAAUGCCACCGUUGCCACCUGAGGAGCCACCAAUGACACCACCAUUGCCUCCUGAGGAACCACCAGAGGGUCCAGCAUUGCCCACUGAGCAGUCAGCAUUAACAGCUGAAAAUACUUGGCCUACAGAGGUGCCAUCAUCACCAUCUGAAGAGUCUGUAUCGCAGCCUGAGCCUCCUGUGAGUCAAAGUGAGAUUUCGGAGCCUUCAGCAGUGCCUACUGAUUAUUCAGUGUCAGCAUCAGAUCCCUCAGUUUUAGUAUCAGAGGCUGCUGUGACUGUUCCAGAACCACCACCAGAGCCAGAAUCUUCAAUUACGUUAACACCUGUAGAGUCUGCAGUAGUAGCAGAAGAACAUGAAGUUGUUCCAGAGAGACCAGUGACUUGUAUGGUAUCUGAAACUCCCGCCAUGUCAGCUGAACCAACUGUGUUAGCAUCAGAGCCUCCUGUUAUGUCAGAGACAGCAGAAACAUUUGAUUCCAUGAGAGCCUCAGGACAUGUUGCCUCAGAAGUAUCUACAUCCUUGUUGGUUCCAGCAGUAACUACUCCAGUGCUGGCAGAGAGCAUUCUGGAGCCGCCAGCCAUGGCUGCCCCAGAGUCUUCAGCUAUGGCUGUCCUGGAGUCUUCGGCUGUGACCGUCCUGGAGUCUUCGACUGUGACUGUCCUGGAGUCUUCGACUGUAACUGUCCUGGAGCCUUCGGUUGUGACUGUCCCGGAGCCUCCUGUUGUGGCUGAGCCAGACUAUGUUACCAUUCCUGUGCCAGUUGUUUCUGCGCUGGAGCCUUCUGUGCCUGUUCUGGAACCAGCGGUGUCAGUCCUUCAACCUUCUAUGAUUGUUUCAGAACCAUCUGUUUCUGUCCAGGAAUCGACUGUGACAGUUUCAGAGCCUGCUGUCACAGUCUCAGAGCAGACUCAAGUAAUACCAACUGAGGUGGCUAUAGAGUCCACACCAAUGAUACUGGAAUCUAGUAUCAUGUCAUCACAUGUUAUGAAAGGAAUUAAUCUAUCCUCUGGUGAUCAAAAUCUUGCUCCAGAGAUUGGCAUGCAGGAGAUUGCAUUGCAUUCAGGUGAAGAACCACAUGCUGAGGAACACCUGAAAGGUGACUUUUACGAAAGUGAACAUGGUAUAAAUAUAGACCUUAAUAUAAAUAAUCAUUUAAUUGCUAAAGAGAUGGAACAUAAUACAGUGUGUGCUGCUGGUACUAGUCCUGUUGGGGAAAUUGGUGAAGAGAAAAUUUUGCCCACCAGUGAGACUAAACAGCGCACAGUAUUGGAUACCUACCCUGGUGUUAGUGAAGCUGAUGCAGGAGAAACUCUAUCUUCUACUGGUCCUUUUGCUCUGGAACCUGAUGCAACAGGAACUAGUAAGGGUAUUGAAUUUACCACAGCAUCUACUCUCAGUUUAGUUAAUAAAUAUGAUGUUGAUUUAUCUUUAACUACUCAAGAUACUGAACAUGACAUGGUAAUUUCCACCAGUCCUAGUGGUGGUAGUGAAGCUGACAUUGAAGGGCCUUUGCCUGCUAAAGAUAUUCAUCUUGAUUUACCAUCUAAUAAUAACCUUGUUAGUAAGGAUACAGAAGAACCAUUACCUGUAAAAGAGAGUGACCAGACAUUAGCAGCUCUGCUCAGCCCUAAAGAAAGUAGUGGAGGAGAAAAAGAAGUACCUCCCCCUCCUAAAGAGACACUGCCUGAUUCAGGAUUUUCUGCCAAUAUUGAGGAUAUUAAUGAAGCAGAUUUAGUGAGACCGUUACUUCCUAAGGACAUGGAACGUCUUACAAGCCUUAGAGCUGGCAUUGAAGGACCUUUACUUGCAAGUGAUGUUGGACGUGACAGAUCUGCUGCCAGCCCGGUUGUAAGUAGUAUGCCAGAAAGAGCUUCAGAGUCUUCUUCAGAGGAAAAAGAUGAUUAUGAAAUUUUUGUAAAAGUUAAGGACACUCACGAAAAAAGCAAGAAAAAUAAGAACCGUGAUAAGGGGGAGAAAGAGAAGAAAAGAGACUCUUCAUUAAGAUCUCGAAGUAAGCGUUCCAAAUCUUCUGAACACAAAUCACGCAAGCGUACCAGUGAAUCUCGUUCUAGGGCAAGAAAGAGAUCAUCUAAGUCCAAGUCUCAUCGCUCUCAGACACGUUCACGGUCACGUUCAAGACGCAGGAGGAGAAGCAGCAGAUCAAGAUCAAAGUCUAGAGGAAGAAGAUCUGUAUCAAAAGAGAAGCGCAAAAGAUCUCCAAAGCACAGAUCCAAGUCUAGGGAAAGAAAAAGAAAAAGAUCAAGCUCCAGGGAUAACCGAAAGACAGUUAGAGCUCGAAGUCGAACCCCAAGUCGUCGGAGUCGGAGUCAUACUCCAAGUCGUCGACGAAGGUCUAGAUCUGUGGGUAGAAGAAGGAGCUUUAGCAUUUCCCCAAGCCGCCGCAGCCGCACCCCCAGCCGCCGCAGCCGCACCCCCAGCCGCCGCAGCCGCACCCCCAGCCGCCGCAGCCGCACCCCCAGCCGCCGGAGCCGCACCCCUAGCCGUCGGAGCCGCACCCCAAGCCGCCGGAGAAGAUCAAGGUCUGUGGUAAGAAGACGAAGCUUCAGUAUCUCACCAGUCAGAUUAAGGCGAUCAAGAACACCCUUAAGAAGAAGGUUUAGCAGAUCUCCCAUCCGUCGUAAAAGAUCCAGGUCUUCUGAACGAGGCAGAUCACCCAAACGUCUGACAGAUUUGGUGGAAGGAAUGAAGGCCAGCUGAAUGGUGAAACAAAUACACCCAUUGAAG circ
ENSG00000159140:+:21:33546212:33555391 ENSG00000159140 MSTRG.21290.1 + 21 33546213 33555391 22 GACAGAUUUGGUGGAAGGAAUG bsj
ENSG00000159140:+:21:33546212:33555391 ENSG00000159140 MSTRG.21290.1 + 21 33546013 33546222 210 AAACUUUAAUUGUAUAAAAAUGAAAUGUCCAAAAUAUAAGUAGAUCAUGGUAAGAAGCAUUAUUAGUGGUGAAUAUCUAAAAUAGGAAAAAGGUAAAACAUCUGACAGUCAGUACAACAUAUGAUUAUUGUAAUUAAUUGGAUUUUUUUAUUAAUGGUAUGAUAAAAUAUUAAUGAAUUUCGAUAACUUUUCAUGUCAAGUGGAAGGAAU ie_up
ENSG00000159140:+:21:33546212:33555391 ENSG00000159140 MSTRG.21290.1 + 21 33555382 33555591 210 ACAGAUUUGGGUGAGUCAUUUUAAAGUUUAAUGGGAUGGUAGUAGAAAAUGUUUUAAACCUUAAUUUUUUUCUGACCUUGAGUCAAGUGAAAUACUUAGUUACUGGUUUAGGAUAAAUGUUUCUGUCUUUAAGUUUUUAUUAUUACAUGGUACUGUAUUUAGGAACUACUGGGAUCAGUGUAUUAUAAUUAGAGUUAAAAAGUCCUGUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 9 339 0.0016439257 0.0004927293 1.738278 AGACGA,AGACGU,GACGAA,GACGUA,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
OAS1 1 77 0.0003287851 0.0001130379 1.540338 GCAUAA GCAUAA
FXR1 9 411 0.0016439257 0.0005970720 1.461168 ACGACA,ACGACG,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 19 831 0.0032878514 0.0012057377 1.447229 AAGCAC,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 24 1222 0.0041098142 0.0017723764 1.213388 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMS3 24 1283 0.0041098142 0.0018607779 1.143167 AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 9 548 0.0016439257 0.0007956130 1.047006 GAGGUA,GGUAGU,GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UUUGGU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
FUS 1 11 0.09090909 0.0007859576 6.853829 UGGUGG AAAAAA,CGGUGG,GGGUGA,GGGUGG,GGGUGU
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SRSF9 2 134 0.13636364 0.0088420225 3.946939 GGUGGA,UGGUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SFPQ 2 153 0.13636364 0.0100864553 3.756968 UGGUGG,UUGGUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF1 2 625 0.13636364 0.0410007860 1.733736 GGUGGA,UGGUGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
A1CF 11 598 0.028571429 0.0030179363 3.242939 AUAAUU,AUCAGU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
YBX2 3 263 0.009523810 0.0013301088 2.839994 AACAUC,ACAACA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GGUAGU,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM46 8 1091 0.021428571 0.0055018138 1.961556 AAUGAA,AUCAUG,AUGAAA,AUGAAU,AUGAUA,AUGAUU,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACUU,UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PUM1 15 2172 0.038095238 0.0109482064 1.798916 AAUAUU,AAUGUU,AAUUGU,AUUGUA,GUAGAU,UGUAAU,UGUAUA,UGUCCA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
PPIE 65 9262 0.157142857 0.0466696896 1.751519 AAAAAU,AAAAUA,AAAUAU,AAUAUA,AAUAUU,AAUUAA,AAUUUU,AUAAAA,AUAAAU,AUAAUU,AUAUAA,AUAUUA,AUUAAU,AUUAUA,AUUAUU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUUAA,UAUUAU,UAUUUA,UUAAAA,UUAAUU,UUAUAA,UUAUUA,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 AGAUCA,AGUCAU,GAGUCA,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 AUAAAA,CAAAAU,CUAAAA,UAAAAA,UAAAAC,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AUAAAA,GAUAAA,UAAAAC,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAG AAAAAA,AAAAAG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 UAGGAA,UAGUAG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AAAGGU,AGGUAA,GGGUGA,GGUAAA,GUGGUG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 AUCUAA,UAUCUA,UAUUUA,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL2 49 9826 0.119047619 0.0495112858 1.265709 AAUUUU,AUACUU,AUUAUU,AUUUAG,AUUUUA,AUUUUU,CAUUUU,CUUUAA,GAUUUU,GUUUUA,GUUUUU,UAAGUU,UAAUUU,UAGUUA,UAUUAU,UAUUGU,UAUUUA,UCAUUU,UGUAUU,UUAAGU,UUAAUU,UUAGUU,UUAUUG,UUGUAU,UUUAAG,UUUAAU,UUUAUU,UUUCAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPC 9 2006 0.023809524 0.0101118501 1.235492 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AGGAAA,AGGAUA,AGGUAA,AGUUAA,AGUUUA,UAGGAA,UAGGAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAG,AAGGAA,AGGAAA,GAAGGA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPDL 12 2689 0.030952381 0.0135530028 1.191438 AACCUU,ACCUUG,ACUUUA,AUCUGA,CUUUAA,GAACUA,UAAGUA,UCUGAC,UUUAGG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 UAUUUA,UUAGAG,UUAGGA,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUUA,UAUUUA,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SFPQ 32 7087 0.078571429 0.0357114067 1.137620 AAGGAA,ACUGGG,AGGAAC,CUGGGA,GAAGCA,GAAGGA,GGGAUC,GGUAAG,GUAAGA,GUAAUU,GUGGUG,UAAUGG,UAAUUG,UAAUUU,UAGAUC,UAGUGG,UGGAAG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
TIAL1 23 5597 0.057142857 0.0282043531 1.018655 AAUUUU,AGUUUU,AUUUUA,AUUUUU,CUUUUC,GUUUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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