ENSG00000137145:+:9:19352072:19361963

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000137145:+:9:19352072:19361963 ENSG00000137145 ENST00000602925 + 9 19352073 19361963 1029 GUGAAGUUCCAUUUCCAAGAGGCAUGAAAGGGCAAGACUUUGAAAAAUCAGAUCAUGGUUCUUCUCAAAAUACCAGCAUGUCUAGCAUCUAUCAGAAUUGUGCAAUGGAGGUUUUGAUGUCCAGUUGUUCACAGUGUAGAGCUUGUGGAGCUUUAGUUUAUGAUGAAGAAAUUAUGGCUGGAUGGACAGCAGAUGACUCAAAUUUGAAUACAGCUUGUCCAUUCUGUAAAAGCAACUUCUUGCCUCUUCUCAAUAUAGAAUUCAAAGAUUUGAGAGGUUCUGCAAGCUUUUUCCUGAAACCAAGUACCUCUGGUGACAGUUUACAAAGUGGAAGCAUUCCAUUGGCAAAUGAAUCCUUGGAGCACAAACCUGUAUCCAGUUUAGCAGAACCUGACUUGAUCAACUUUAUGGACUUCCCAAAACAUAACCAGAUCAUAACUGAAGAAACAGGCUCUGCAGUUGAACCAAGUGAUGAAAUAAAGAGAGCCAGUGGAGAUGUCCAAACUAUGAAAAUUUCAUCUGUGCCUAAUAGUUUAUCAAAGCGAAAUGUGUCUUUGACUCGAAGUCACAGUGUUGGAGGCCCAUUGCAGAAUAUUGACUUUACCCAGCGACCGUUUCAUGGCAUCUCAACAGUUAGUCUUCCAAAUAGUCUGCAGGAAGUUGUGGAUCCUUUAGGAAAAAGACCCAAUCCUCCCCCUGUUUCUGUGCCCUACUUGAGUCCUCUAGUACUCCGUAAAGAACUUGAAUCUUUGCUAGAAAAUGAAGGUGAUCAGGUGAUUCAUACAUCUUCUUUCAUCAAUCAACAUCCAAUCAUUUUCUGGAACCUCGUUUGGUAUUUCAGACGUUUGGACCUUCCUAGUAACUUGCCAGGACUUAUCCUCACAUCUGAACAUUGUAAUGAAGGUGUACAGCUUCCUCUGUCAUCUCUGUCCCAGGAUAGCAAACUUGUGUAUAUUCAGCUGUUAUGGGAUAAUAUCAACCUUCAUCAGGAACCAAGAGAACCUCUGUAUGUCUCAUGGAGGAAUUUUAGUGAAGUUCCAUUUCCAAGAGGCAUGAAAGGGCAAGACUUUGAAAAAUCA circ
ENSG00000137145:+:9:19352072:19361963 ENSG00000137145 ENST00000602925 + 9 19352073 19361963 22 GAGGAAUUUUAGUGAAGUUCCA bsj
ENSG00000137145:+:9:19352072:19361963 ENSG00000137145 ENST00000602925 + 9 19351873 19352082 210 ACAAUCAUGUAUUUUCCACCUAGAUUUAAUUAACUAUUGUUAACUUUAUCUCUUUCUAUGUAUGCAUACAUUUUUAUACUGAGCCACUUGAAAAACAGUUGCAGACUUUAUUCUGUGUCCCCCCUAAAUACUUUGGCAUGCAUUUUCAAAAAACAAGGACAUUCCUUACUUAAGGUAUUACGAUGUAUAUUCCUUUGUAGGUGAAGUUCC ie_up
ENSG00000137145:+:9:19352072:19361963 ENSG00000137145 ENST00000602925 + 9 19361954 19362163 210 AGGAAUUUUAGUAAGUAAAAUAGAAUUAAAGACAUAACAGCCAGGUGCAGUGGCUCGCACCUGUAAUGCCAGCACUUUGGGAGGCCUAGGCUGGCGGACCACUUGAGGUCAGGAGUUGGAGACCAGGCUGGCCAACAUGGUGAAAUCCUGUCUCUAUUAAAAAUACAAAACUUAGCCAGGUGUGGUAGCAGGUGCCUGUAGUCCCAGCUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 2 286 0.002915452 0.0004159215 2.809336 AACCUG AACCUG
ANKHD1 2 339 0.002915452 0.0004927293 2.564852 AGACGU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM46 23 4554 0.023323615 0.0066011240 1.821008 AAUCAA,AAUCAU,AAUGAA,AUCAAA,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUG,GAUCAA,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ERI1 2 632 0.002915452 0.0009173461 1.668181 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM6 4 1054 0.004859086 0.0015289102 1.668181 AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBMY1A1 1 489 0.001943635 0.0007101099 1.452643 CAAGAC ACAAGA,CAAGAC
MATR3 2 739 0.002915452 0.0010724109 1.442862 AAUCUU,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRPB2 3 991 0.003887269 0.0014376103 1.435084 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 1 497 0.001943635 0.0007217036 1.429279 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
PUM1 21 5823 0.021379981 0.0084401638 1.340918 AAUAUU,AAUUGU,ACAUAA,AGAAUU,AUUGUA,CAGAAU,GAAUUG,GUAUAU,GUCCAG,UAAUAU,UACAUC,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBFOX1 3 1077 0.003887269 0.0015622419 1.315139 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PUM2 6 1890 0.006802721 0.0027404447 1.311702 GUAUAU,UACAUC,UGUAAA,UGUACA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM28 2 822 0.002915452 0.0011926949 1.289495 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
EIF4B 3 1179 0.003887269 0.0017100607 1.184710 CUUGGA,GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZNF638 5 1773 0.005830904 0.0025708878 1.181453 GGUUCU,GUUCUU,GUUGUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SNRNP70 3 1237 0.003887269 0.0017941145 1.115485 AAUCAA,AUUCAA,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ACO1 3 1283 0.003887269 0.0018607779 1.062851 CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 3 1283 0.003887269 0.0018607779 1.062851 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
G3BP2 4 1644 0.004859086 0.0023839405 1.027337 AGGAUA,GGAUAA,GGAUAG,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UUUAGU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
ELAVL2 2 28 0.13636364 0.0018993974 6.165773 UUUAGU,UUUUAG AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG
HNRNPA1 2 119 0.13636364 0.0078595756 4.116864 AGUGAA,UAGUGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SFPQ 1 153 0.09090909 0.0100864553 3.172005 UUAGUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 UUAGUG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRP14 4 218 0.011904762 0.001103386 3.431530 CCUGUA,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
TUT1 3 230 0.009523810 0.001163845 3.032640 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC3 4 310 0.011904762 0.001566909 2.925546 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBM41 5 502 0.014285714 0.002534260 2.494937 AUACAU,AUACUU,UACAUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZCRB1 6 666 0.016666667 0.003360540 2.310201 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SNRPB2 2 288 0.007142857 0.001456066 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
IGF2BP3 11 1348 0.028571429 0.006796655 2.071676 AAAAAC,AAAACA,AAAUAC,AAUACA,ACAAUC,ACAUUC,CAAUCA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
EIF4B 1 226 0.004761905 0.001143692 2.057840 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.001718057 2.055723 UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.001773478 2.009919 AAAGAC,AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO1 1 283 0.004761905 0.001430875 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.001451028 1.714464 GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
IGF2BP2 14 2163 0.035714286 0.010902862 1.711794 AAAAAC,AAAACA,AAAUAC,AAUACA,ACAAUC,ACAUUC,CAAAAC,CAAUCA,CAUACA,GAAAUC,GCAUAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
ENOX1 4 756 0.011904762 0.003813986 1.642167 AAGACA,AAUACA,AGGACA,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SART3 4 777 0.011904762 0.003919790 1.602690 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ACO1 1 325 0.004761905 0.001642483 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPA3 1 349 0.004761905 0.001763402 1.433177 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGHMBP2 1 350 0.004761905 0.001768440 1.429061 AAAAAA AAAAAA
RBM3 2 541 0.007142857 0.002730754 1.387202 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM2 3 764 0.009523810 0.003854293 1.305073 GUAUAU,UAAAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
MSI1 4 961 0.011904762 0.004846836 1.296424 AGUAAG,AGUUGG,UAGGUG,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SAMD4A 3 790 0.009523810 0.003985288 1.256855 CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
A1CF 2 598 0.007142857 0.003017936 1.242939 UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.007154373 1.220068 AAACAA,AAAUAC,AAUACA,ACAUAA,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RC3H1 2 631 0.007142857 0.003184200 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SF1 5 1294 0.014285714 0.006524587 1.130615 AGUAAG,AUUAAC,UACUGA,UAGUAA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PABPC4 1 462 0.004761905 0.002332729 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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