ENSG00000061938:-:3:195878252:195888606

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000061938:-:3:195878252:195888606 ENSG00000061938 ENST00000333602 - 3 195878253 195888606 1274 AGGCUGGGAGGCGGCAGAAUGCAGCCAGAGGAGGGCACAGGCUGGCUGCUGGAGCUGCUGUCCGAGGUGCAGCUGCAACAGUACUUCCUGCGGCUCCGAGAUGACCUCAACGUCACCCGCCUGUCCCACUUUGAGUACGUCAAGAAUGAGGACCUGGAGAAGAUCGGCAUGGGUCGGCCUGGCCAGCGGCGGCUGUGGGAGGCUGUGAAGAGGAGGAAGGCCUUGUGCAAACGCAAGUCGUGGAUGAGUAAGGUGUUCAGUGGAAAGCGACUGGAGGCUGAGUUCCCACCUCAUCACUCUCAGAGCACCUUCCGGAAGACCUCGCCCGCCCCUGGGGGCCCAGCAGGGGAGGGGCCCCUGCAGAGCCUCACCUGCCUCAUUGGGGAGAAGGACCUGCGCCUCCUGGAGAAGCUGGGUGAUGGUUCCUUUGGCGUGGUGCGCAGGGGCGAGUGGGACGCGCCCUCAGGGAAGACGGUGAGUGUGGCUGUGAAGUGCCUGAAGCCCGAUGUCCUGAGCCAGCCAGAAGCCAUGGACGACUUCAUCCGGGAGGUCAAUGCCAUGCACUCGCUCGACCACCGAAACCUCAUCCGCCUCUACGGGGUGGUGCUCACGCCGCCCAUGAAGAUGGUGACAGAGCUGGCACCUCUGGGAUCGUUGUUGGACCGGCUACGUAAGCACCAGGGCCACUUCCUCCUGGGGACUCUGAGCCGCUACGCUGUGCAGGUGGCUGAGGGCAUGGGCUACCUGGAGUCCAAGCGCUUUAUUCACCGUGACCUGGCUGCCCGCAAUCUGCUGUUGGCUACCCGCGACCUGGUCAAGAUCGGGGACUUUGGGCUGAUGCGAGCACUACCUCAGAAUGACGACCAUUACGUCAUGCAGGAACAUCGCAAGGUGCCCUUCGCCUGGUGUGCCCCCGAGAGCCUGAAGACACGCACCUUCUCCCAUGCCAGCGACACCUGGAUGUUCGGGGUGACACUGUGGGAAAUGUUCACCUACGGCCAGGAGCCCUGGAUCGGCCUCAACGGCAGUCAGAUCCUGCAUAAGAUCGACAAGGAGGGGGAGCGGCUGCCCCGGCCCGAGGACUGUCCCCAGGACAUCUACAACGUCAUGGUCCAGUGCUGGGCUCACAAGCCAGAGGACAGACCCACGUUUGUGGCCCUGCGGGACUUCCUGCUGGAGGCCCAGCCCACAGACAUGCGGGCCCUUCAGGACUUUGAGGAACCGGACAAGCUGCACAUCCAGAUGAAUGAUGUCAUCACCGUCAUCGAGGGAAGAGGCUGGGAGGCGGCAGAAUGCAGCCAGAGGAGGGCACAGGCUGGCUGCU circ
ENSG00000061938:-:3:195878252:195888606 ENSG00000061938 ENST00000333602 - 3 195878253 195888606 22 AUCGAGGGAAGAGGCUGGGAGG bsj
ENSG00000061938:-:3:195878252:195888606 ENSG00000061938 ENST00000333602 - 3 195888597 195888806 210 CGCCCUAAUUGUGCCCUGUGGCUGGCAGGAAUAGGGGACGUGGGUCCAGGCGGUUCUCGGUAGCUUCCCUCGGGAGUCAGAAGGUGGUGUGAGCCCUUCCGGGUGGCCGUGUAGUGGGAUGAAGGUGAGCCCAGGUCACUCGGGCAGGCCCCUGUUGUCCCCCCACAACCCUUGUCCCUGAGCCACUCCUCCCCCCACAGAGGCUGGGAG ie_up
ENSG00000061938:-:3:195878252:195888606 ENSG00000061938 ENST00000333602 - 3 195878053 195878262 210 UCGAGGGAAGGUAGGGAGUGCAGGGCUGGGCCCCGCCCUGGGAUCGCUUGAAGGGCACAGGUCGGAGGGACCUGUGGACAGAUCUGUUUGGCCUCCAAGAUUCCCUUGGCCACAUACAGGCUGGCGGUUGGGCCUGAACCCUGCAGUGUGAGGGGAGGACAGGCCUGCCUCCGUCUUCCUAGUGCCUUUCCCUGCCCAGCUUCCCUCCAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001569859 0.0001130379 3.795756 GCAUAA GCAUAA
SUPV3L1 2 199 0.002354788 0.0002898408 3.022265 CCGCCC CCGCCC
CNOT4 2 314 0.002354788 0.0004564992 2.366913 GACAGA GACAGA
RBM8A 4 611 0.003924647 0.0008869128 2.145699 ACGCGC,CGCGCC,GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
RBM25 1 268 0.001569859 0.0003898359 2.009696 AUCGGG AUCGGG,CGGGCA,UCGGGC
IGF2BP1 4 831 0.003924647 0.0012057377 1.702647 AAGCAC,AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
NONO 7 1498 0.006279435 0.0021723567 1.531374 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
FXR1 1 411 0.001569859 0.0005970720 1.394658 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
ZC3H10 4 1053 0.003924647 0.0015274610 1.361427 CAGCGA,CCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SRP14 3 847 0.003139717 0.0012289250 1.353238 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ESRP2 9 2150 0.007849294 0.0031172377 1.332295 GGGAAA,GGGAAG,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPH3 32 7688 0.025902669 0.0111429292 1.216972 AAGGUG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CGAGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGGC,GGGUCG,UCGAGG,UGGGUG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
RBM14 1 478 0.001569859 0.0006941687 1.177277 CGCGCC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
HNRNPH2 38 9711 0.030612245 0.0140746688 1.121008 AAGGUG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGGA,GGGGGC,GGGUCG,UCGAGG,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 40 10717 0.032182104 0.0155325680 1.050962 AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAGGAA,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGGC,GGGUCG,UCGAGG,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF4 1 18 0.09090909 0.001244433 6.190864 GGAAGA AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 2 54 0.13636364 0.003602305 5.242395 AAGAGG,GAAGAG AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF5 1 44 0.09090909 0.002947341 4.946939 GGAAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF6 1 68 0.09090909 0.004519256 4.330267 GGAAGA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SFPQ 3 153 0.18181818 0.010086455 4.172005 AAGAGG,GAAGAG,GGAAGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AAGAGG AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF10 1 160 0.09090909 0.010544931 3.107875 AAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 3 625 0.18181818 0.041000786 2.148773 AAGAGG,GAAGAG,GGAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 31 0.004761905 0.0001612253 4.884389 CCGCCC CCGCCC
RBM25 2 53 0.007142857 0.0002720677 4.714464 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
HNRNPA1L2 3 188 0.009523810 0.0009522370 3.322146 AUAGGG,GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ENOX1 6 756 0.016666667 0.0038139863 2.127594 AGGACA,AUACAG,CAUACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUCGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
G3BP1 24 3431 0.059523810 0.0172914148 1.783411 ACAGGC,AGGCCC,CACAGG,CAGGCC,CCACAG,CCAGGC,CCCACA,CCCAGG,CCCCAC,CCCCCA,CCCCCC,CCCCGC,CCCGCC,CCCUCC,CCCUCG,CCGCCC,CCUCCG,CCUCGG ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPH3 17 2496 0.042857143 0.0125806127 1.768333 AAGGUG,AGGGAA,AGGGGA,CGAGGG,GAAGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,UCGAGG,UCGGGC AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAGA,GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM5 14 2359 0.035714286 0.0118903668 1.586708 AAGGUA,AAGGUG,AGGGAA,AGGGAG,CCCCCC,GAAGGG,GAAGGU,GAGGGA,GGUGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CGGGCA,CUGGCA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUCU,GGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPH1 20 3406 0.050000000 0.0171654575 1.542420 AAGGUG,AGGGAA,AGGGGA,CGAGGG,GAAGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,UCGAGG,UCGGGC AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPF 18 3360 0.045238095 0.0169336961 1.417641 AAGGUG,AGGGAA,AGGGGA,GAAGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGAUG,GGGCUG,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH2 17 3198 0.042857143 0.0161174929 1.410908 AAGGUG,AGGGAA,AGGGGA,CGAGGG,GAAGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,UCGAGG,UCGGGC AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCCUUC,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPK 14 3244 0.035714286 0.0163492543 1.127276 ACCCUU,CAACCC,CCCCAC,CCCCCA,CCCCCC,GCCCAG,GCCCCU,UCCCCC,UCCCUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
PCBP2 18 4164 0.045238095 0.0209844821 1.108215 AACCCU,AUUCCC,CCCCCA,CCCCCC,CCCUAA,CCCUCC,CCCUUC,CCUCCA,CCUCCC,CCUUCC,CUCCCC,CUUCCC,CUUCCU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 CCACAA,CCCUGC,GAUCUG,GCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 AGUGUG,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
LIN28A 3 900 0.009523810 0.0045395002 1.069005 CGGAGG,GGAGGA,GGAGGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGGAA,AGGUAG,CGGUAG,GGUGGU,GUGGUG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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