ENSG00000249859:+:8:127939507:128010444

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000249859:+:8:127939507:128010444 ENSG00000249859 ENST00000660438 + 8 127939508 128010444 964 CUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGCACAUACAGCCAUCAUGAUGGUACUUUAAGUGGAGGCUGAAUCAUCUCCCCUUUGAGCUGCUUGGCACGUGGCUCCCUUGGUGUUCCCCUUUUACUGCCAGGACACUGAGAUUUGGAGAGAAUCCUGUUACACCUGGGAUUUAGGCACUUUCAAUCUGAAAAAAUACAUAUCCUUUCAGCACUCUGGACGGACUUGAGAACUGUCCUUACGUGACCUAAAGCUGGAGUAUUUUGAGAUUGGAGAAUUAAGGCCUUCAGUGGGUUGAAUGAGGCCCAACCCACAUUGAAGAGGACCAUCUGCUUUACUCAGUCUCCUGGUUGAAGUGAUAAUCUCAUCUGGACAUACUCAGAAAUGCUGUUUAACCAGCUCUCUGGAAAUCCUGUGGCCCAGUCAAGUUGACACACAAAAUUAACCAUCACACUGCAGAGACACAGUCUAUCCCAAUACCUGUAUUUACUGGAGUGUGGGCACCCUGGCUUCAAGCUCACGAGAAACCAGAAGGAAGUCACUGUGCAUAGCCAUCCCCUAAGAAGAGGGCAUUCCUGCUCUUCCUUCUCCAUGGCUAGAGGAUCUACAUGAACUAUUUAGAUUUUUUCUACCUGGGAGAUUUAACUCCUCUCUCCUAUUUAUUUAUUUAUAUAUCAGCAUGGACUUGCAGGCCAACAGAGAUUUUGAGAAACACAUUGAAGGAUCUGUUAACACUUGAUAUACCCAAUAAAAGCAGUGGUUGUGCCAGUGCUGAUCUGUCUUGAUGUGAAUGUGAACAAUGGGAACCUGAGCUGAGCAGUUAAUGCUAGGGUGACAGAAACUGGACCUCUCCCAAGACAUGUGACAGAGUAAUACAGCAGCCAACUUCUUCGCCAAAUUAAAGUUUUACAAGAUUUAACCUGUCAUCAAGACCUGGGAUUUUGGUGCUGACCAUACUCCCUGGAGCCUUCUCCCGAGGUGCGCGGGUGACCUUGGC circ
ENSG00000249859:+:8:127939507:128010444 ENSG00000249859 ENST00000660438 + 8 127939508 128010444 22 GGAUUUUGGUGCUGACCAUACU bsj
ENSG00000249859:+:8:127939507:128010444 ENSG00000249859 ENST00000660438 + 8 127939308 127939517 210 AUGGGGGCCUACGACCGCAGAUGGAGCAGAGGUGGACAGGGUAUGGUCCGGCAGGUGGAGGUGCUGGAGAAAAGCCGCGUUAGGCAGCACGGGAGCCAGGUGCGGGGUCUCUCAAAGCCUCGAGUCCCUGGCAGUGCUGUGCUCUGUGAGGACUGCUUUUGACUGCAGGGCACUGACACUCAUACCUUUUGCUUCUGCAGCUGACCAUAC ie_up
ENSG00000249859:+:8:127939507:128010444 ENSG00000249859 ENST00000660438 + 8 128010435 128010644 210 GAUUUUGGUGGUGAGUCAUCUUCAAAAGCCAAGUUCGGUCCCUGGUUUGCCUUCUUUUCCGCACAAGAACAAGGGUUUUGAUGGCUCUGGUCUCCAGGACCAUCUGUGGCUUUCUAUUAGCAAUAAUCGCACCUCGGUGAAACCUCAUUGGCUACGAUACUGCCACUGCGCAAAGCUCAUGGCUUUCUUUAAUAGCAAAUGGCCUCUGAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 267 0.003112033 0.0003883867 3.002292 CUCUCU CUCUCU
NXF1 2 286 0.003112033 0.0004159215 2.903474 AACCUG AACCUG
ZFP36L2 12 1277 0.013485477 0.0018520827 2.864186 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CNOT4 2 314 0.003112033 0.0004564992 2.769173 GACAGA GACAGA
RBMY1A1 3 489 0.004149378 0.0007101099 2.546781 ACAAGA,CAAGAC ACAAGA,CAAGAC
RBMS1 3 497 0.004149378 0.0007217036 2.523417 AUAUAC,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 426 0.003112033 0.0006188101 2.330289 AUAUAU,UAUAUA AUAUAU,UAUAUA
ZCRB1 10 1605 0.011410788 0.0023274215 2.293594 AAUUAA,AUUUAA,GAAUUA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPA1L2 1 314 0.002074689 0.0004564992 2.184211 UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM14 2 478 0.003112033 0.0006941687 2.164499 CGCGGG,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
ELAVL3 14 2867 0.015560166 0.0041563169 1.904480 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPD 13 2837 0.014522822 0.0041128408 1.820115 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBM8A 2 611 0.003112033 0.0008869128 1.810993 GUGCGC,UGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
TUT1 2 678 0.003112033 0.0009840095 1.661113 AAAUAC,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPM 3 999 0.004149378 0.0014492040 1.517634 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
NELFE 9 3028 0.010373444 0.0043896388 1.240721 CUCUCU,CUCUGG,CUGGCU,CUGGUU,UCUCUC,UCUCUG,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
QKI 8 2805 0.009336100 0.0040664663 1.199044 AAUCAU,ACACAC,AUCUAC,AUUAAC,CACACU,UAACCU,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SSB 3 1260 0.004149378 0.0018274462 1.183066 CUGUUU,GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ERI1 1 632 0.002074689 0.0009173461 1.177357 UUUCAG UUCAGA,UUUCAG
ELAVL4 15 5105 0.016597510 0.0073996354 1.165441 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ACO1 3 1283 0.004149378 0.0018607779 1.156989 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 3 1283 0.004149378 0.0018607779 1.156989 AUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 3 1318 0.004149378 0.0019115000 1.118190 AUACAU,UACAUG,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 7 2654 0.008298755 0.0038476365 1.108922 GAAUGA,GAAUGU,GUGAAU,GUUGUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPL 14 5085 0.015560166 0.0073706513 1.077993 AAACAC,AAAUAC,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACAUAC,CACAAA,CACACA,CACGAG,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM4 8 3065 0.009336100 0.0044432593 1.071202 CCUUCU,CGCGGG,CUUCCU,CUUCUU,GCGCGG,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SRSF11 1 688 0.002074689 0.0009985015 1.055058 AAGAAG AAGAAG
ELAVL1 15 5554 0.016597510 0.0080503280 1.043847 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUGGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ENOX1 8 3195 0.009336100 0.0046316558 1.011292 AAGACA,AAUACA,AGGACA,AUACAG,CAUACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SF1 2 24 0.13636364 0.001637412 6.379898 GCUGAC,UGCUGA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
YTHDC1 1 20 0.09090909 0.001375426 6.046474 UGGUGC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC
MBNL1 1 36 0.09090909 0.002423369 5.229338 GUGCUG AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 UGGUGC AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF9 1 134 0.09090909 0.008842023 3.361976 UGGUGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 2 625 0.13636364 0.041000786 1.733736 GGUGCU,UGGUGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GCCGCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
TUT1 2 230 0.007142857 0.0011638452 2.617602 CGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NELFE 8 1059 0.021428571 0.0053405885 2.004465 CUCUGG,CUGGUU,GGUCUC,GUCUCU,UCUCUC,UCUGGU,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RC3H1 4 631 0.011904762 0.0031841999 1.902536 CCUUCU,CUUCUG,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GACUGC,GCCUAC,GGCUAC,UACUGC,UCAUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACCGCA,ACUGCA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGCA,CUGGUC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
MBNL1 14 3258 0.035714286 0.0164197904 1.121066 CUGCCA,CUGCUU,GCUUUU,GGCUUU,GUGCUC,GUGCUG,UGCUGU,UGCUUC,UGCUUU,UUGCCU,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGAA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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