ENSG00000005175:-:12:47679492:47697719

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000005175:-:12:47679492:47697719 ENSG00000005175 ENST00000005386 - 12 47679493 47697719 993 GACCGUAUCCUUGAUGAGCUUGACAAAGACGAUAGUACCCAUGAGUCUCUGUCUCAAGAAUCAGAGUCGGAAGAAGAUGGGAUUCAUGUAGAUUCACAAAAGGCUCUUGUUUUAAAAGAAAAGGGCAAUAAAUACUUCAAACAAGGAAAAUAUGAUGAAGCAAUUGACUGCUACACAAAAGGCAUGGAUGCCGAUCCAUAUAAUCCCGUGUUGCCAACGAACAGAGCGUCAGCAUAUUUUAGACUGAAAAAAUUUGCUGUUGCUGAGUCUGAUUGUAAUUUAGCAGUUGCCUUGAAUAGAAGUUAUACAAAGGCUUAUUCCAGACGAGGUGCUGCUCGAUUUGCUUUGCAAAAAUUAGAAGAGGCCAAAAAAGAUUAUGAAAGAGUAUUAGAACUAGAACCAAAUAACUUUGAAGCAACAAAUGAACUCAGGAAAAUCAGUCAGGCUUUAGCAUCCAAAGAAAACUCAUAUCCAAAGGAAGCUGACAUAGUGAUUAAGUCAACAGAAGGAGAGCGAAAGCAAAUUGAAGCACAACAGAAUAAGCAGCAGGCCAUUUCAGAGAAAGAUCGGGGGAAUGGAUUUUUCAAAGAGGGGAAAUAUGAAAGAGCAAUUGAAUGCUAUACUCGAGGGAUAGCAGCAGAUGGUGCUAAUGCCCUUCUUCCAGCUAACAGAGCUAUGGCCUAUCUGAAGAUUCAGAAAUAUGAAGAAGCUGAAAAAGACUGCACACAAGCCAUUUUAUUAGAUGGCUCAUAUUCUAAAGCUUUUGCCAGAAGAGGAACUGCAAGAACAUUUUUGGGAAAGCUAAAUGAGGCAAAACAAGAUUUUGAAACUGUUUUACUUCUGGAACCUGGAAAUAAGCAAGCAGUAACUGAACUCUCCAAAAUUAAAAAGGAAUUAAUUGAGAAAGGACACUGGGAUGAUGUCUUUCUUGAUUCCACACAAAGACAAAAUGUGGUAAAACCCAUUGAUAAUCCACCGCAUCCUGGAUCAACUGACCGUAUCCUUGAUGAGCUUGACAAAGACGAUAGUACCCAUGAGUCUCU circ
ENSG00000005175:-:12:47679492:47697719 ENSG00000005175 ENST00000005386 - 12 47679493 47697719 22 CUGGAUCAACUGACCGUAUCCU bsj
ENSG00000005175:-:12:47679492:47697719 ENSG00000005175 ENST00000005386 - 12 47697710 47697919 210 GAUCUUGGUUUUCUAAGCUAAGGCAUCUUUUUCUCUGGAUAUAAUCUUAACAAUGAGAGAUUUGGGUUGCUUUGUAAGGCUGUAGGUCCUUAGAUUGUAACAAUUUACAUUCAUUUGAGUGUAUUUUUUUAGUAUGUCUUUUUUUCUUUUUUUUCCUAAUCAUAUAAUUAUGACCCCUGUUUUCCGUCUUUUGAUUUUAGGACCGUAUCC ie_up
ENSG00000005175:-:12:47679492:47697719 ENSG00000005175 ENST00000005386 - 12 47679293 47679502 210 UGGAUCAACUGUAAGUAAAGCACUUUCAUUUUUUCCUUGCCAUUUAAAUAUGUUGUAAUAGGAGAAUUGGAAACCAACUAUUGUAUUAAUAAACUUUUUUUUUUUAAUUAUACUUUAAGUUCUAGGGUACAUGUGCACAACGUGCAGAUCUGAUACAUAGGUAUACAUGUGCCAUGUUGGUUUGCUGCACCCAUCAACUCAUCAUUUACA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.002014099 0.0002275250 3.146037 AGGGAU AGGGAU
ANKHD1 3 339 0.004028197 0.0004927293 3.031267 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPAB 15 1782 0.016112790 0.0025839306 2.640567 AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM25 1 268 0.002014099 0.0003898359 2.369196 AUCGGG AUCGGG,CGGGCA,UCGGGC
NXF1 1 286 0.002014099 0.0004159215 2.275751 AACCUG AACCUG
ERI1 3 632 0.004028197 0.0009173461 2.134596 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPN1 6 1222 0.007049345 0.0017723764 1.991804 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM6 5 1054 0.006042296 0.0015289102 1.982593 AAUCCA,AUCCAA,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPM 4 999 0.005035247 0.0014492040 1.796802 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
PABPC4 5 1251 0.006042296 0.0018144033 1.735602 AAAAAA,AAAAAG AAAAAA,AAAAAG
SSB 5 1260 0.006042296 0.0018274462 1.725268 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
TUT1 2 678 0.003021148 0.0009840095 1.618353 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX2 1 452 0.002014099 0.0006564894 1.617291 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.002014099 0.0006579386 1.614110 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.003021148 0.0009985015 1.597260 AAGAAG AAGAAG
RBMY1A1 1 489 0.002014099 0.0007101099 1.504020 ACAAGA ACAAGA,CAAGAC
ZCRB1 5 1605 0.006042296 0.0023274215 1.376364 AAUUAA,GAAUUA,GAUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 7 2152 0.008056395 0.0031201361 1.368525 AAAACU,AAGACG,AAGACU,AAUACU,AGACGA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
IGHMBP2 2 813 0.003021148 0.0011796520 1.356736 AAAAAA AAAAAA
TRA2A 24 6871 0.025176234 0.0099589296 1.338000 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 49 13860 0.050352467 0.0200874160 1.325770 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGG,AAGGAA,AAGGAG,ACAAAG,AGACAA,AGAGAA,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAGC,GAGGAA,GAGGGA,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
TRA2B 25 7329 0.026183283 0.0106226650 1.301500 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPL 17 5085 0.018126888 0.0073706513 1.298267 AAACAA,AAAUAA,AAAUAC,AACAAA,AAUAAA,ACACAA,CACAAA,CACAAC,CACAAG,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
HNRNPLL 11 3534 0.012084592 0.0051229360 1.238126 ACCGCA,ACUGCA,AGACGA,CAAACA,CACACA,CACCGC,CAGACG,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PABPC5 7 2400 0.008056395 0.0034795387 1.211238 AGAAAA,AGAAAG,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ESRP2 6 2150 0.007049345 0.0031172377 1.177221 GGGAAA,GGGAAU,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC3 3 1234 0.004028197 0.0017897669 1.170363 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC1 13 4443 0.014098691 0.0064402624 1.130370 AAAAAA,ACAAAU,ACGAAC,AGAAAA,CAAACA,CAAAUA,CGAACA,CUAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SART3 7 2634 0.008056395 0.0038186524 1.077071 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF4 10 3740 0.011077543 0.0054214720 1.030881 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SF1 1 24 0.09090909 0.001637412 5.794936 ACUGAC ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
SRSF9 1 134 0.09090909 0.008842023 3.361976 UGACCG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 4 216 0.011904762 0.0010933091 3.444765 AAUCUU,AUCUUA,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
CPEB4 14 691 0.035714286 0.0034864974 3.356651 UUUUUU UUUUUU
DDX19B 14 691 0.035714286 0.0034864974 3.356651 UUUUUU UUUUUU
EIF4A3 14 691 0.035714286 0.0034864974 3.356651 UUUUUU UUUUUU
U2AF2 21 1071 0.052380952 0.0054010480 3.277731 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM41 8 502 0.021428571 0.0025342604 3.079899 AUACAU,AUACUU,UACAUG,UACAUU,UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AAGCAC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RALY 18 1117 0.045238095 0.0056328094 3.005612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
KHDRBS2 16 1051 0.040476190 0.0053002821 2.932932 AAUAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPCL1 20 1381 0.050000000 0.0069629182 2.844164 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 21 1487 0.052380952 0.0074969770 2.804661 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA1 20 1428 0.050000000 0.0071997179 2.795916 AUCAAC,AUUCAU,CAUUCA,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPC 28 2006 0.069047619 0.0101118501 2.771545 AUUUUU,CUUUUU,GGAUAU,GGGUAC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SYNCRIP 14 1041 0.035714286 0.0052498992 2.766140 UUUUUU AAAAAA,UUUUUU
HNRNPU 14 1136 0.035714286 0.0057285369 2.640263 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA2 17 1434 0.042857143 0.0072299476 2.567479 AGGCAU,AUCAAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS3 17 1646 0.042857143 0.0082980653 2.368689 AAUAAA,AUAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
KHDRBS1 18 1945 0.045238095 0.0098045143 2.206020 AUUUAA,AUUUAC,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
ELAVL3 16 1928 0.040476190 0.0097188634 2.058214 AUUUUA,UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
FUS 14 1711 0.035714286 0.0086255542 2.049812 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
QKI 6 904 0.016666667 0.0045596534 1.869970 AAUCAU,ACUCAU,AUCAUA,CUAAUC,UAAUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL1 23 3309 0.057142857 0.0166767432 1.776736 UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUGAUU,UUGGUU,UUUAGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL2 70 9826 0.169047619 0.0495112858 1.771600 AAUUUA,AUACUU,AUUUAA,AUUUAC,AUUUUA,AUUUUU,CAUUUU,CUUUAA,CUUUUU,GAUUUU,GUUUUC,UAAGUU,UACUUU,UAUACU,UAUGUU,UAUUGU,UAUUUU,UCAUUU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUAUAC,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUAGU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
DAZAP1 19 2878 0.047619048 0.0145052398 1.714965 AAUUUA,AGUAAA,AGUAUG,UAGGUA,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 19 2916 0.047619048 0.0146966949 1.696047 UAUUUU,UUGUAU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TIA1 33 5140 0.080952381 0.0259018541 1.644018 AUUUUU,CUUUUG,CUUUUU,GUUUUC,UAUUUU,UUUUCU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 34 5597 0.083333333 0.0282043531 1.562976 AUUUUA,AUUUUU,CUUUUG,CUUUUU,GUUUUC,UAUUUU,UUAAAU,UUUAAA,UUUUAA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUGGU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PTBP1 45 8003 0.109523810 0.0403264813 1.441445 ACUUUC,ACUUUU,AUUUUU,CAUCUU,CUUUUU,GUCUUU,UACUUU,UAUUUU,UCUUUU,UUCCUU,UUCUCU,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUACAU,UAAAUA,UACAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AGAAUU,AUUGUA,GAAUUG,GUAAUA,GUACAU,UAAAUA,UACAUA,UGUAAU,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPK 15 3244 0.038095238 0.0163492543 1.220386 ACCCAU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
PPIE 44 9262 0.107142857 0.0466696896 1.198978 AAAUAU,AAUAAA,AAUUAU,AAUUUA,AUAAUU,AUAUAA,AUUAAU,AUUAUA,AUUUAA,AUUUUA,AUUUUU,UAAAUA,UAAUAA,UAAUUA,UAUAAU,UAUUAA,UAUUUU,UUAAAU,UUAAUA,UUAAUU,UUUAAA,UUUAAU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAUA,AUCAUU,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,UAUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PCBP2 17 4164 0.042857143 0.0209844821 1.030213 AAACCA,AACCAA,UUAGGA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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