ENSG00000129515:-:14:34581560:34609742

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000129515:-:14:34581560:34609742 ENSG00000129515 ENST00000396526 - 14 34581561 34609742 780 CUUAAAGCAAUAAAUGUAGAUCUUCAAAGUGAUGCUGCUCUGCAGGUGGACAUUUCUGAUGCUCUUAGUGAGCGGGAUAAAGUAAAAUUCACUGUUCACACAAAGAGUUCAUUGCCAAAUUUUAAACAAAACGAGUUUUCAGUUGUUCGGCAACAUGAGGAAUUUAUCUGGCUUCAUGAUUCCUUUGUUGAAAAUGAAGACUAUGCAGGUUAUAUCAUUCCACCAGCACCACCAAGACCUGAUUUUGAUGCUUCAAGGGAAAAACUACAGAAGCUUGGUGAAGGAGAAGGGUCAAUGACGAAGGAAGAAUUCACAAAGAUGAAACAGGAACUGGAAGCUGAAUAUUUGGCAAUAUUCAAGAAGACAGUUGCGAUGCAUGAAGUGUUCCUGUGUCGUGUGGCAGCACAUCCUAUUUUGAGAAGAGAUUUAAAUUUCCAUGUCUUCUUGGAAUAUAAUCAAGAUUUGAGUGUGCGAGGAAAAAAUAAAAAAGAGAAACUUGAAGACUUCUUUAAAAACAUGGUUAAAUCAGCAGAUGGAGUAAUCGUUUCAGGAGUAAAGGAUGUAGAUGAUUUCUUUGAGCACGAACGAACAUUUCUUUUGGAGUAUCAUAACCGAGUUAAGGAUGCAUCUGCUAAAUCUGAUAGAAUGACAAGAUCCCACAAAAGUGCUGCAGAUGAUUACAAUAGAAUUGGUUCUUCAUUAUAUGCUUUAGGAACUCAGGAUUCUACAGAUAUAUGCAAGUUUUUUCUCAAAGUUUCAGAACUGUUCGAUAAAACAAGACUUAAAGCAAUAAAUGUAGAUCUUCAAAGUGAUGCUGCUCUGCAGGUGGA circ
ENSG00000129515:-:14:34581560:34609742 ENSG00000129515 ENST00000396526 - 14 34581561 34609742 22 AUAAAACAAGACUUAAAGCAAU bsj
ENSG00000129515:-:14:34581560:34609742 ENSG00000129515 ENST00000396526 - 14 34609733 34609942 210 AUACUAUAGAAUUAAGGUAAUAGCGUUGCCCAAAGCAGCUGCUUCAAAAUGUAUAUAGUAUGUAUGUUAAAUGGACAUGAGUACCUCUUUAGACUUAAUAAUCUUUUGUUAUUUUUGUUUUGUUUUUGCAUUGUCUUAAGAGAAAAAAUGAAAUUAUAUAAAACAUGAUUUUCAUGAAGAUACUGGUUUUCUUUUUCUAGCUUAAAGCAA ie_up
ENSG00000129515:-:14:34581560:34609742 ENSG00000129515 ENST00000396526 - 14 34581361 34581570 210 UAAAACAAGAGUAAGUACUAAAUUAUAGAGAUAUACUGCAUAAUAUUGUGCCCAGAGAGAGCUCAUGUUAAAGGUUUUUACCACAAUUCAGAAAAUUUUUUUAAAAGAGUGAUCACUAUUGGCCAGGCACGUGGCUCGUGCCUGUAAUCCCAACACUUUGGGAGGCCAAGUGGGGCGGAUCACGAGGUCACGAGAUCAAGACCAUCCUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 4 489 0.006410256 0.0007101099 3.174268 ACAAGA,CAAGAC ACAAGA,CAAGAC
ERI1 4 632 0.006410256 0.0009173461 2.804844 UUCAGA,UUUCAG UUCAGA,UUUCAG
FXR1 2 411 0.003846154 0.0005970720 2.687440 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA0 2 453 0.003846154 0.0006579386 2.547392 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
ANKHD1 1 339 0.002564103 0.0004927293 2.379587 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM42 1 407 0.002564103 0.0005912752 2.116552 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
SNRNP70 5 1237 0.007692308 0.0017941145 2.100145 AAUCAA,AUCAAG,AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
AKAP1 1 426 0.002564103 0.0006188101 2.050885 AUAUAU AUAUAU,UAUAUA
RBM3 9 2152 0.012820513 0.0031201361 2.038773 AAAACG,AAAACU,AAACGA,AAACUA,AAGACU,AGACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBFOX2 1 452 0.002564103 0.0006564894 1.965610 UGCAUG UGACUG,UGCAUG
AGO2 7 1830 0.010256410 0.0026534924 1.950562 AAAAAA,AAAGUG,AAGUGC,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
KHDRBS2 7 1858 0.010256410 0.0026940701 1.928667 AAUAAA,AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PABPC3 4 1234 0.006410256 0.0017897669 1.840610 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBMS1 1 497 0.002564103 0.0007217036 1.828976 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPM 3 999 0.005128205 0.0014492040 1.823193 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
IGHMBP2 2 813 0.003846154 0.0011796520 1.705055 AAAAAA AAAAAA
RBM28 2 822 0.003846154 0.0011926949 1.689191 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS3 11 3429 0.015384615 0.0049707696 1.629947 AAAUAA,AAUAAA,AUAAAA,AUAAAG,GAUAAA,UAAAAC,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ZNF638 5 1773 0.007692308 0.0025708878 1.581150 GGUUCU,GUUCUU,GUUGUU,UGUUCG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 5 1782 0.007692308 0.0025839306 1.573849 AAGACA,ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NONO 4 1498 0.006410256 0.0021723567 1.561121 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM46 14 4554 0.019230769 0.0066011240 1.542633 AAUCAA,AAUGAA,AUCAAG,AUCAUA,AUCAUU,AUGAAA,AUGAAG,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPN1 3 1222 0.005128205 0.0017723764 1.532769 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC4 3 1251 0.005128205 0.0018144033 1.498959 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBMS3 3 1283 0.005128205 0.0018607779 1.462548 AAUAUA,AUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZCRB1 4 1605 0.006410256 0.0023274215 1.461650 ACUUAA,AUUUAA,GACUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 4 1644 0.006410256 0.0023839405 1.427034 AGGAUG,AGGAUU,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
KHDRBS1 11 4064 0.015384615 0.0058910141 1.384900 AUAAAA,AUUUAA,CUAAAU,UAAAAA,UAAAAC,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRSF11 1 688 0.002564103 0.0009985015 1.360617 AAGAAG AAGAAG
RBFOX1 2 1077 0.003846154 0.0015622419 1.299799 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPL 13 5085 0.017948718 0.0073706513 1.284017 AAACAA,AAAUAA,AACAAA,AAUAAA,ACACAA,CACAAA,CACACA,CACCAC,CACGAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TIAL1 27 10182 0.035897436 0.0147572438 1.282457 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUG,CUUUUG,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUCA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SART3 6 2634 0.008974359 0.0038186524 1.232745 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PUM2 4 1890 0.006410256 0.0027404447 1.225972 GUAGAU,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
EIF4B 2 1179 0.003846154 0.0017100607 1.169369 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
DAZAP1 14 5964 0.019230769 0.0086445016 1.153562 AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUG,AGGUUA,AGUAAA,AGUUAA,UAGGAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPD 6 2837 0.008974359 0.0041128408 1.125674 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UUAGGA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SYNCRIP 3 1634 0.005128205 0.0023694485 1.113903 AAAAAA,UUUUUU AAAAAA,UUUUUU
CPEB4 1 821 0.002564103 0.0011912456 1.105983 UUUUUU UUUUUU
DDX19B 1 821 0.002564103 0.0011912456 1.105983 UUUUUU UUUUUU
EIF4A3 1 821 0.002564103 0.0011912456 1.105983 UUUUUU UUUUUU
SRSF4 8 3740 0.011538462 0.0054214720 1.089694 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGF2BP1 1 831 0.002564103 0.0012057377 1.088538 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PPIE 41 18315 0.053846154 0.0265436196 1.020478 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAUAA,AUAUAU,AUAUUU,AUUAUA,AUUUAA,AUUUAU,AUUUUA,UAAAAA,UAAAAU,UAAAUU,UAUAAU,UAUUUU,UUAAAA,UUAAAU,UUAUAU,UUUAAA,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
IGF2BP3 10 4815 0.014102564 0.0069793662 1.014790 AAAAAC,AAAACA,AAAUCA,AAAUUC,AACUCA,AAUUCA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 2 6 0.13636364 0.0004584752 8.216399 ACUUAA,GACUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
RBMY1A1 1 7 0.09090909 0.0005239717 7.438792 CAAGAC ACAAGA,CAAGAC
RBM3 1 20 0.09090909 0.0013754257 6.046474 AAGACU AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 GACUUA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
RBMY1A1 2 95 0.007142857 0.0004836759 3.884389 ACAAGA,CAAGAC ACAAGA,CAAGAC
RBMS1 5 217 0.014285714 0.0010983474 3.701167 AUAUAC,AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GCGGAU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 UAUAUA AUAUAU,UAUAUA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AUAUAG,CUAUAG,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 AAUUAA,ACUUAA,GAAUUA,GACUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAUAU,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUGAA,AUCAAG,AUGAAA,AUGAAG,AUGAUU,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 AUAAAA,CAAAAU,CUAAAU,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AUACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF7 13 2893 0.033333333 0.0145808142 1.192894 ACGAGA,AGAGAA,AGAGAG,AGAGAU,AGAUCA,AUAGAA,CAGAGA,CGAGAU,GAGAGA,GAGAUC,UAGAGA,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUC,AUUUUU,CUUUUG,CUUUUU,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUAUU,AGAAUU,GUAAUA,GUAUAU,UAAUAU,UAUAUA,UGUAAU,UGUAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAAUUU,AAUUUU,AUUUUC,AUUUUU,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUUAA,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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