ENSG00000083642:+:13:32648753:32652007

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000083642:+:13:32648753:32652007 ENSG00000083642 ENST00000315596 + 13 32648754 32652007 331 GGGUAGAAAUAUUUCUGUCAUGGCUCAUUCAAAGACUAGGACCAAUGAUGGAAAAAUUACAUAUCCGCCUGGGGUCAAGGAAAUAUCAGAUAAAAUAUCUAAAGAGGAGAUGGUGAGACGAUUAAAGAUGGUUGUGAAAACUUUUAUGGAUAUGGACCAGGACUCUGAAGAAGAAAAGGAGCUUUAUUUAAACCUAGCUUUACAUCUUGCUUCAGAUUUUUUUCUCAAGCAUCCUGAUAAAGAUGUUCGCUUACUGGUAGCCUGCUGCCUUGCUGAUAUUUUCAGGAUUUAUGCUCCUGAAGCUCCUUACACAUCCCCUGAUAAACUAAAGGGGUAGAAAUAUUUCUGUCAUGGCUCAUUCAAAGACUAGGACCAAUGAUG circ
ENSG00000083642:+:13:32648753:32652007 ENSG00000083642 ENST00000315596 + 13 32648754 32652007 22 AUAAACUAAAGGGGUAGAAAUA bsj
ENSG00000083642:+:13:32648753:32652007 ENSG00000083642 ENST00000315596 + 13 32648554 32648763 210 AAAGUAAAAAUAAGUUUUGUUUUUCUAAAAAUAAUUUGGGGAAAUGUUCAAUAGAGUGAUUUUCAUUAAAUGGUAAAGUAAAUUACUAUAAAUUAGGAGGUAGUUACAAAUUUUGGUUGGUGGGGAAGGUUACCAUUUAUGUUUGUUAAGAAUGUUUAUAUCUAUUUUUUGGUUUGCAUCUAAUAGUUUUCUUGUUUCAGGGGUAGAAAU ie_up
ENSG00000083642:+:13:32648753:32652007 ENSG00000083642 ENST00000315596 + 13 32651998 32652207 210 UAAACUAAAGGCAAGUACUGAUUUAAAUAACUCCAAGAUUGACCGAUACUUUGAUUUAUCUUUCUAACUAAAAUGGGAGUUAAGGUAUUUAGAUGAUUUCCUUGGAUUCUUUGACAUUAGCUACAGUAAUCUUUUGCUAAACUUAAUGUUUUUUUUUUUUUUUAGAACUUAUUUUUGAAAAACUUUCUGGUCUUGAGGUUAAGAAGUAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.009063444 0.0004927293 4.201192 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM42 1 407 0.006042296 0.0005912752 3.353195 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
ERI1 2 632 0.009063444 0.0009173461 3.304521 UUCAGA,UUUCAG UUCAGA,UUUCAG
KHDRBS2 7 1858 0.024169184 0.0026940701 3.165309 AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
MATR3 2 739 0.009063444 0.0010724109 3.079202 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZFP36L2 4 1277 0.015105740 0.0018520827 3.027876 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CPEB4 2 821 0.009063444 0.0011912456 2.927588 UUUUUU UUUUUU
DDX19B 2 821 0.009063444 0.0011912456 2.927588 UUUUUU UUUUUU
EIF4A3 2 821 0.009063444 0.0011912456 2.927588 UUUUUU UUUUUU
KHDRBS3 11 3429 0.036253776 0.0049707696 2.866590 AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM3 6 2152 0.021148036 0.0031201361 2.760843 AAAACU,AAACUA,AAGACU,AGACGA,AGACUA,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF11 1 688 0.006042296 0.0009985015 2.597260 AAGAAG AAGAAG
ELAVL3 7 2867 0.024169184 0.0041563169 2.539791 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 3 1477 0.012084592 0.0021419234 2.496190 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 3 1553 0.012084592 0.0022520629 2.423850 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZCRB1 3 1605 0.012084592 0.0023274215 2.376364 AUUUAA,GAUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRP14 1 847 0.006042296 0.0012289250 2.297700 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM41 2 1318 0.009063444 0.0019115000 2.245354 UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPAB 3 1782 0.012084592 0.0025839306 2.225530 AAAGAC,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ELAVL4 10 5105 0.033232628 0.0073996354 2.167074 AUCUAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPM 1 999 0.006042296 0.0014492040 2.059836 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPCL1 3 2062 0.012084592 0.0029897078 2.015092 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPA3 3 2140 0.012084592 0.0031027457 1.961551 AAGGAG,AGGAGC,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SYNCRIP 2 1634 0.009063444 0.0023694485 1.935508 UUUUUU AAAAAA,UUUUUU
CPEB2 3 2261 0.012084592 0.0032780993 1.882237 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPD 4 2837 0.015105740 0.0041128408 1.876890 AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPC 5 3471 0.018126888 0.0050316361 1.849032 AUUUUU,GGAUAU,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 2 1773 0.009063444 0.0025708878 1.817793 GGUUGU,UGUUCG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPN1 1 1222 0.006042296 0.0017723764 1.769412 AGAAGA AAAAGA,AGAAGA
PABPC3 1 1234 0.006042296 0.0017897669 1.755325 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 1 1237 0.006042296 0.0017941145 1.751825 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PUM2 2 1890 0.009063444 0.0027404447 1.725649 UACAUA,UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPU 2 1965 0.009063444 0.0028491350 1.669535 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
SART3 3 2634 0.012084592 0.0038186524 1.662033 AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS1 5 4064 0.018126888 0.0058910141 1.621543 AUAAAA,AUUUAA,GAAAAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL1 7 5554 0.024169184 0.0080503280 1.586049 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIA1 12 9206 0.039274924 0.0133428208 1.557545 AUUUUC,AUUUUU,CUCCUU,CUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 13 10182 0.042296073 0.0147572438 1.519100 AUUUUC,AUUUUU,CUUUUA,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAU,UUUUCA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 24 18315 0.075528701 0.0265436196 1.508660 AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAUAUU,AUAAAA,AUAUUU,AUUAAA,AUUUAA,AUUUAU,AUUUUU,UAAAAU,UAUUUA,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
YBX2 1 1480 0.006042296 0.0021462711 1.493265 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF4 4 3740 0.015105740 0.0054214720 1.478340 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 1 1498 0.006042296 0.0021723567 1.475836 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
NOVA1 4 3872 0.015105740 0.0056127669 1.428313 CAUUCA,UCAUUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PABPC5 2 2400 0.009063444 0.0034795387 1.381163 AGAAAA,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
G3BP2 1 1644 0.006042296 0.0023839405 1.341749 AGGAUU AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TRA2A 7 6871 0.024169184 0.0099589296 1.279106 AAGAAA,AAGAAG,AAGAGG,AGAAGA,AGAGGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPA2B1 9 8607 0.030211480 0.0124747476 1.276086 AAGAAG,AAGGAA,AAGGAG,AAGGGG,AGACUA,AGGAGC,AUUUAA,CAAGGA,GACUAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SRSF10 15 13860 0.048338369 0.0200874160 1.266877 AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGAGG,AAGGAA,AAGGAG,AAGGGG,AGAGGA,CAAAGA,GAGACG,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF5 9 8869 0.030211480 0.0128544391 1.232830 AAGAAG,AGAAGA,AUAAAG,CACAUC,GAAGAA,UAAAGG,UACAUA,UACAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
RC3H1 1 1786 0.006042296 0.0025897275 1.222297 UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
FUS 3 3648 0.012084592 0.0052881452 1.192335 UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ELAVL2 19 18468 0.060422961 0.0267653478 1.174730 AUAUUU,AUUUAA,AUUUAU,AUUUUC,AUUUUU,CUUUUA,GAUUUA,GAUUUU,UAUUUA,UAUUUU,UUAUUU,UUUAUG,UUUAUU,UUUUAU,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPA1 17 18070 0.054380665 0.0261885646 1.054157 AAAGAG,AAGAGG,AAGGAG,AGACUA,AGAGGA,AGGAGC,AUUUAA,AUUUAU,CAAAGA,CAAGGA,GACUAG,GAGGAG,UUAUUU,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
MBNL1 12 13372 0.039274924 0.0193802045 1.019025 AUGCUC,CCUGCU,CUGCCU,CUGCUG,CUUGCU,UCGCUU,UGCUGC,UGCUUC,UUCGCU,UUGCUG,UUGCUU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF5 1 44 0.09090909 0.002947341 4.946939 UAAAGG AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
ZRANB2 1 45 0.09090909 0.003012837 4.915230 UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
HNRNPA2B1 1 49 0.09090909 0.003274823 4.794936 AAGGGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
RBM5 1 56 0.09090909 0.003733298 4.605902 AAGGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPF 2 90 0.13636364 0.005960178 4.515960 AAGGGG,GGGGUA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 AAGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 AAGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF10 2 160 0.13636364 0.010544931 3.692837 AAAGGG,AAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
AGO1 4 283 0.011904762 0.0014308746 3.056570 AGGUAG,GAGGUA,GGUAGU,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CPEB4 11 691 0.028571429 0.0034864974 3.034723 UUUUUU UUUUUU
DDX19B 11 691 0.028571429 0.0034864974 3.034723 UUUUUU UUUUUU
EIF4A3 11 691 0.028571429 0.0034864974 3.034723 UUUUUU UUUUUU
RALY 14 1117 0.035714286 0.0056328094 2.664575 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TUT1 2 230 0.007142857 0.0011638452 2.617602 CGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
U2AF2 12 1071 0.030952381 0.0054010480 2.518739 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 15 1381 0.038095238 0.0069629182 2.451847 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 11 1041 0.028571429 0.0052498992 2.444212 UUUUUU AAAAAA,UUUUUU
KHDRBS2 11 1051 0.028571429 0.0053002821 2.430432 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ELAVL1 36 3309 0.088095238 0.0166767432 2.401226 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPU 11 1136 0.028571429 0.0057285369 2.318335 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 16 1646 0.040476190 0.0082980653 2.286227 AAAUAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
KHDRBS1 18 1945 0.045238095 0.0098045143 2.206020 AUUUAA,CUAAAA,UAAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ESRP2 6 731 0.016666667 0.0036880290 2.176044 GGGAAA,GGGAAG,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPC 18 2006 0.045238095 0.0101118501 2.161491 AUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL3 17 1928 0.042857143 0.0097188634 2.140676 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
NOVA1 12 1428 0.030952381 0.0071997179 2.104038 UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
NOVA2 11 1434 0.028571429 0.0072299476 1.982516 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ZRANB2 10 1360 0.026190476 0.0068571141 1.933369 AGGUAG,AGGUAU,AGGUUA,GAGGUU,GGUAAA,GUAAAG,UAAAGG,UGGUAA,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
FUS 12 1711 0.030952381 0.0086255542 1.843361 UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ELAVL4 21 2916 0.052380952 0.0146966949 1.833551 AUCUAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 ACUUAA,AUUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
DAZAP1 19 2878 0.047619048 0.0145052398 1.714965 AGGUAG,AGGUUA,AGUAAA,AGUUAA,UAGUUA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAAUUU,AAUUUU,AGUUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUG,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUCAG,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
TIA1 32 5140 0.078571429 0.0259018541 1.600949 AUUUUC,AUUUUG,AUUUUU,CUUUUG,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 59 9826 0.142857143 0.0495112858 1.528744 AAUUUG,AAUUUU,AUACUU,AUUUAA,AUUUAG,AUUUAU,AUUUUC,AUUUUG,AUUUUU,CUUUCU,GAUUUA,GAUUUU,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUGUU,UAUUUA,UAUUUU,UCUUUU,UGAUUU,UUAUAU,UUAUGU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAUA,UUUAUG,UUUCAU,UUUCUU,UUUGAU,UUUUAG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PPIE 49 9262 0.119047619 0.0466696896 1.350981 AAAAAU,AAAAUA,AAAUAA,AAAUUA,AAAUUU,AAUAAU,AAUUUU,AUAAAU,AUAAUU,AUUAAA,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUUU,UAUAAA,UAUUUA,UAUUUU,UUAAAU,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAGG,AGGUAG,UAGGAG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAG,AAGAAU,AAUAAG,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PCBP2 18 4164 0.045238095 0.0209844821 1.108215 AAAUUA,AAUUAC,ACAUUA,AUUAAA,CAUUAA,UUAGGA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUUAU,AUCUAA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SFPQ 30 7087 0.073809524 0.0357114067 1.047422 GAGGUA,GUAGUU,GUGAUU,UAAUGU,UAAUUU,UAGUUU,UGAUUU,UGGUCU,UGGUGG,UGGUUG,UGGUUU,UUAAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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