ENSG00000139163:+:12:22643762:22673660

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000139163:+:12:22643762:22673660 ENSG00000139163 ENST00000671733 + 12 22643763 22673660 789 CUCUUCACAGAUGGAAUCACAAAUAAACUUAUUGGCUGUUACGUGGGAAACACCAUGGAGGAUGUAGUCCUGGUGAGAAUUUAUGGCAAUAAGACUGAGUUAUUAGUCGAUCGAGAUGAGGAAGUAAAGAGUUUUCGAGUGUUGCAGGCUCAUGGGUGUGCACCACAACUCUACUGUACCUUCAAUAAUGGACUAUGCUAUGAAUUUAUACAAGGAGAAGCACUGGAUCCAAAGCAUGUCUGCAACCCAGCCAUUUUCAGGCUAAUAGCUCGUCAGCUUGCUAAAAUCCAUGCUAUUCAUGCACACAAUGGCUGGAUCCCCAAAUCUAAUCUUUGGCUAAAGAUGGGAAAGUAUUUCUCUCUCAUUCCCACAGGAUUUGCAGAUGAAGACAUUAAUAAAAGGUUCCUAAGUGAUAUCCCAAGCUCUCAGAUUCUCCAGGAAGAGAUGACUUGGAUGAAGGAGAUUCUUUCCAACCUGGGCUCACCUGUUGUGCUUUGCCAUAAUGACCUAUUGUGUAAGAAUAUAAUCUACAAUGAGAAACAAGGUGAUGUACAGUUCAUUGAUUAUGAAUAUUCUGGAUACAACUACCUGGCAUAUGAUAUUGGAAAUCAUUUCAAUGAAUUUGCAGGUGUGAGUGAUGUAGACUAUAGUCUGUAUCCAGAUAGAGAACUACAGAGUCAGUGGCUGCGUGCUUACCUUGAAGCCUACAAAGAAUUUAAGGGCUUUGGGACUGAAGUUACUGAAAAGGAGGUAGAAAUACUCUUCAUUCAAGUCAAUCAGUUUGCAUUGCUCUUCACAGAUGGAAUCACAAAUAAACUUAUUGGCUGUUACGUGGGAAA circ
ENSG00000139163:+:12:22643762:22673660 ENSG00000139163 ENST00000671733 + 12 22643763 22673660 22 AGUUUGCAUUGCUCUUCACAGA bsj
ENSG00000139163:+:12:22643762:22673660 ENSG00000139163 ENST00000671733 + 12 22643563 22643772 210 AACAUUAGUGGUUCUCUUUGUUUAAAUAUAGAAUUAAAAUUAUAGAUGUUAGAUAAAAUUGUAUUCAAAGAUGGUUCUUUUAUGUGAAGAAGUUGGUGUUUUCUUUAAUUAGUAUUUAACUCAUGAUUUUCAAUUUAUCUCCUGUUCUCUAAAGAUAGAUAAUUGCUUUUUUUCCCAUUUUUAAAAAAAAUUUUUGGCAGCUCUUCACAG ie_up
ENSG00000139163:+:12:22643762:22673660 ENSG00000139163 ENST00000671733 + 12 22673651 22673860 210 GUUUGCAUUGGUAAGUUUAAAUGUACACAAUUAAUGAAAGGUUCUUACUGUAAUUGAAAAUGCUUCUAAAUUUUCGUCAUCUUAGACAAUUUCCUAUUUUAAGUUUUGUGAAUUUUUGUUCAAAAUAAUGUAAAUACAUGACCAUUUACAGUAUGCAUUACCCCAUUGCAUUAGUUUUAAGGACAAAAAUUUUGUUUCAUUUCCUGCUAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 3 453 0.005069708 0.0006579386 2.945878 AAUUUA AAUUUA,AGAUAU,AGUAGG
PTBP2 1 267 0.002534854 0.0003883867 2.706337 CUCUCU CUCUCU
RBM42 2 407 0.003802281 0.0005912752 2.684964 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
NXF1 1 286 0.002534854 0.0004159215 2.607520 AACCUG AACCUG
AGO1 2 548 0.003802281 0.0007956130 2.256727 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM6 4 1054 0.006337136 0.0015289102 2.051327 AAUCCA,AUCCAA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
TUT1 2 678 0.003802281 0.0009840095 1.950121 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRPB2 3 991 0.005069708 0.0014376103 1.818230 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM28 2 822 0.003802281 0.0011926949 1.672640 UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 632 0.002534854 0.0009173461 1.466365 UUUCAG UUCAGA,UUUCAG
QKI 7 2805 0.010139417 0.0040664663 1.318127 AAUCAU,ACUUAU,AUCUAA,AUCUAC,CUAAUC,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBFOX1 2 1077 0.003802281 0.0015622419 1.283247 AGCAUG,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPL 13 5085 0.017743980 0.0073706513 1.267466 AAACAA,AAACAC,AAAUAA,AAAUAC,AAUAAA,ACACAA,ACACCA,ACCACA,CACAAA,CACAAC,CACACA,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
MATR3 1 739 0.002534854 0.0010724109 1.241045 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS2 4 1858 0.006337136 0.0026940701 1.234043 AAUAAA,AUAAAA,AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM46 11 4554 0.015209125 0.0066011240 1.204154 AAUCAU,AAUGAA,AUCAUU,AUGAAG,AUGAAU,AUGAUA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
EIF4B 2 1179 0.003802281 0.0017100607 1.152818 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF1 5 2391 0.007604563 0.0034664959 1.133387 GUGUUG,GUUGUG,UGUCUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
G3BP2 3 1644 0.005069708 0.0023839405 1.088555 AGGAUG,AGGAUU,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 2 1237 0.003802281 0.0017941145 1.083593 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.002534854 0.0012057377 1.071987 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ZFP36L2 2 1277 0.003802281 0.0018520827 1.037717 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS3 2 1283 0.003802281 0.0018607779 1.030959 AAUAUA,CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPA3 4 2140 0.006337136 0.0031027457 1.030285 AAGGAG,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 4 2150 0.006337136 0.0031172377 1.023563 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
NELFE 6 3028 0.008871990 0.0043896388 1.015155 CUCUCU,GGCUAA,UCUCUC,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MBNL1 1 36 0.09090909 0.002423369 5.229338 UUGCUC AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZNF638 7 646 0.019047619 0.0032597743 2.546767 GGUUCU,GUUCUU,GUUGGU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
A1CF 6 598 0.016666667 0.0030179363 2.465331 AUAAUU,CAGUAU,UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ZCRB1 6 666 0.016666667 0.0033605401 2.310201 AAUUAA,AUUUAA,GAAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM2 7 764 0.019047619 0.0038542926 2.305073 GUAAAU,UAAAUA,UAGAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC4 3 462 0.009523810 0.0023327287 2.029520 AAAAAA AAAAAA,AAAAAG
PUM1 16 2172 0.040476190 0.0109482064 1.886379 AAUUGU,AGAAUU,AGAUAA,AUUGUA,GUAAAU,UAAAUA,UAAUGU,UAGAUA,UGUAAA,UGUAAU,UGUACA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PPIE 62 9262 0.150000000 0.0466696896 1.684405 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAUU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUUA,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUUAAA,UUUAAU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUC,UAAAUU,UAUUUU,UUAAAU,UUUAAA,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAU,UAAAAA,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAAUAA,AGAUAA,AUAAAA,AUUAAA,GAUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AAUACA,AGGACA,UAGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 AAAAAA,UUUUUU AAAAAA,UUUUUU
ELAVL2 54 9826 0.130952381 0.0495112858 1.403213 AAUUUA,AAUUUU,AUUUAA,AUUUAC,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUA,CUUUUU,GAUUUU,GUUUUA,GUUUUC,UAAGUU,UAUUUA,UAUUUU,UCAUUU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUAGUU,UUAUGU,UUCAUU,UUCUUU,UUGUAU,UUUAAG,UUUAAU,UUUAUG,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAA,GACAAA,GGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
TIA1 26 5140 0.064285714 0.0259018541 1.311443 AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUA,GUUUUC,GUUUUG,UAUUUU,UCUCCU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAGUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AAUUUA,AUUUAU,UAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AUUGCA,CCUGCU,CUGCUA,GUAUGC,UCCUGC,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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