ENSG00000198589:-:4:150302624:150590859

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198589:-:4:150302624:150590859 ENSG00000198589 ENST00000357115 - 4 150302625 150590859 1971 CCACAGAUGAAGAUAUCCUUGCUAAAGGAAAACAGUCCAUCAGGAGUCAGGCUUUAGGAAAUCAGAACUCAGAAAACGAGAUCCUCCUGGAAGGCGAUGAUGAUACUCUGUCAUCCGUGGAUGAGAAAGAUUUAGAGAAUCUUGCCGGUCCUGUUAGCCUGAGCACACCAGCUCAGCUUGUGGCCCCCUCUGUUGUAGUAAAGGGCACUCUUUCUGUCACCUCCUCCGAACUCUAUUUUGAGGUGGAUGAAGAGGAUCCUAACUUCAAAAAAAUCGACCCCAAGAUCUUGGCAUAUACAGAAGGGCUGCAUGGAAAAUGGCUGUUCACAGAGAUACGAUCAAUCUUUUCUCGUCGUUAUCUUUUGCAAAAUACAGCCCUGGAGAUCUUUAUGGCAAACAGAGUUGCUGUGAUGUUCAACUUCCCAGACCCUGCAACAGUAAAGAAAGUGGUUAACUAUCUACCUCGUGUUGGCGUUGGAACAAGUUUUGGAUUGCCUCAAACCAGACGUAUUUCAUUAGCUAGUCCACGUCAGCUUUUUAAGGCUUCUAAUAUGACCCAGCGAUGGCAACACAGAGAGAUAUCUAAUUUUGAGUACUUGAUGUUUCUCAACACGAUAGCAGGACGGAGUUAUAAUGACUUAAAUCAGUAUCCAGUGUUUCCUUGGGUCAUCACUAAUUAUGAAUCAGAAGAACUGGAUCUUACCUUGCCCACCAACUUCAGAGAUUUGUCCAAGCCAAUAGGAGCUCUGAACCCAAAAAGAGCAGCAUUCUUCGCUGAGCGUUAUGAAUCAUGGGAAGAUGAUCAAGUUCCAAAGUUUCACUAUGGUACUCAUUACUCAACUGCAAGUUUUGUUCUUGCAUGGCUGCUAAGAAUAGAACCCUUUACAACUUAUUUCCUAAAUUUGCAAGGAGGCAAAUUUGAUCAUGCAGAUCGAACUUUUUCAUCAAUUUCCAGAGCUUGGCGAAACAGUCAGCGUGAUACCUCUGAUAUUAAGGAGUUGAUCCCUGAAUUUUAUUAUCUCCCUGAGAUGUUUGUCAACUUCAAUAAUUAUAAUCUUGGAGUGAUGGAUGAUGGGACAGUAGUGUCUGAUGUCGAACUUCCUCCUUGGGCCAAAACCUCAGAAGAAUUUGUUCACAUAAACAGAUUGGCCCUGGAGAGUGAAUUUGUUUCCUGCCAGCUUCACCAAUGGAUUGAUCUCAUUUUUGGCUAUAAACAGCAAGGACCAGAAGCUGUCCGAGCCCUCAAUGUGUUCUAUUACUUGACCUAUGAAGGAGCUGUCAAUCUGAAUUCAAUAACUGAUCCUGUGUUGAGAGAGGCUGUUGAAGCUCAAAUCCGAAGUUUUGGACAGACUCCUUCUCAACUACUCAUAGAGCCCCAUCCUCCCAGAGGUUCUGCCAUGCAAGUGAGUCCAUUGAUGUUCACAGACAAAGCCCAGCAGGAUGUUAUCAUGGUCCUCAAGUUUCCCUCCAACUCCCCUGUUACUCACGUGGCAGCCAACACCCAGCCUGGUUUGGCAACUCCCGCUGUGAUCACAGUCACUGCUAACAGGUUAUUUGCGGUGAACAAAUGGCACAACCUUCCUGCUCAUCAAGGUGCUGUACAAGACCAGCCAUACCAGCUGCCAGUGGAAAUCGAUCCUCUCAUAGCCAGCAAUACAGGAAUGCACAGGAGGCAAAUCACUGACCUUUUAGACCAAAGUAUUCAAGUGCAUUCCCAGUGCUUUGUCAUCACUUCAGACAACCGCUAUAUUCUCGUCUGUGGCUUCUGGGAUAAAAGUUUCAGAGUCUAUUCUACAGACACAGGAAGAUUGAUCCAAGUGGUGUUUGGCCAUUGGGAUGUCGUCACUUGCCUUGCUCGUUCUGAGUCAUAUAUUGGGGGAAAUUGCUACAUUCUCUCAGGGUCACGUGAUGCAACUCUUUUGCUGUGGUAUUGGAAUGGAAAAUGCAGUGGGAUUGGAGAUAACCCAGGCACCACAGAUGAAGAUAUCCUUGCUAAAGGAAAACAGUCCAUCAGGAGUCAG circ
ENSG00000198589:-:4:150302624:150590859 ENSG00000198589 ENST00000357115 - 4 150302625 150590859 22 UAACCCAGGCACCACAGAUGAA bsj
ENSG00000198589:-:4:150302624:150590859 ENSG00000198589 ENST00000357115 - 4 150590850 150591059 210 GGGUAACAUUAGACUAGGUUGGGGGAUCGAGUUUGUCAGAUCAGGCAUGUGUGCCAUCCCAAUCACUUUCUCCACUGUAGCUGACACUGUGUAUAAAAGAUUGACCAUCUUUGGCCACCUACCCUUACCUAAGCCCCUACCCCUCUGCCGAAGUGCUCUUCCCAGAACUGAUGGACAGCUUUGUUUCCUUUUCAUUUCAGCCACAGAUGA ie_up
ENSG00000198589:-:4:150302624:150590859 ENSG00000198589 ENST00000357115 - 4 150302425 150302634 210 AACCCAGGCAGUAAGUAUGACUCAUUUUUUAAGUAAACUUUUACAAGGAUGUAGAGAAUAACAUUUUGCAGUAAAGUUACCUUUUUGUUAUGGUAAAAGUGAGACAGGAUUAUCAAGUAUUUUUUAUUUAUUAUAAUUUAAGAAUGAUCCAAAUAGCCUCAUUAUCAAUUUUGUGACCAUUGAUAAUUAAAAUCUAAGCAUGAAAUCUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 7 739 0.004058853 0.0010724109 1.920214 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
ANKHD1 2 339 0.001522070 0.0004927293 1.627167 AGACGU,GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ERI1 4 632 0.002536783 0.0009173461 1.467462 UUCAGA,UUUCAG UUCAGA,UUUCAG
TUT1 4 678 0.002536783 0.0009840095 1.366256 AAAUAC,AGAUAC,CAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 8 1237 0.004566210 0.0017941145 1.347725 AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
QKI 19 2805 0.010147133 0.0040664663 1.319225 AAUCAU,ACUAAU,ACUCAU,ACUUAU,AUCUAA,AUCUAC,CACUAA,CUAACA,CUACUC,CUCAUA,UACUCA,UCAUAU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBFOX2 2 452 0.001522070 0.0006564894 1.213191 UGCAUG UGACUG,UGCAUG
HNRNPA0 2 453 0.001522070 0.0006579386 1.210010 AGAUAU AAUUUA,AGAUAU,AGUAGG
CNOT4 1 314 0.001014713 0.0004564992 1.152388 GACAGA GACAGA
RBMY1A1 2 489 0.001522070 0.0007101099 1.099920 ACAAGA,CAAGAC ACAAGA,CAAGAC
CSTF2 11 1967 0.006088280 0.0028520334 1.094044 GUGUUG,GUGUUU,GUUUUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
A1CF 9 1642 0.005073567 0.0023810421 1.091407 AUAAUU,AUCAGU,CAGUAU,UAAUUA,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPLL 2 9 0.13636364 0.0006549646 7.701826 ACCACA,CACCAC ACAAAC,ACACCA,ACAUAC,ACGACA,CACCAC,CAGACG,CAUACA,GACGAC
HNRNPL 2 14 0.13636364 0.0009824469 7.116864 ACCACA,CACCAC AAAUAA,AAAUAC,AACAAA,ACACCA,ACAUAA,ACAUAC,CACAAC,CACCAC,CAUAAA,CAUACA
YBX1 2 19 0.13636364 0.0013099293 6.701826 ACCACA,CACCAC AACCAC,ACACCA,ACAUCU,ACCACC,CACCAC,CAGCAA,CCACCA,CCAGCA,CCUGCG,CUGCGG,GAUCUG,GCCUGC,UCCAGC,UGCGGU
SRSF3 1 61 0.09090909 0.0040607807 4.484596 CACCAC AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC
G3BP1 1 69 0.09090909 0.0045847524 4.309509 AGGCAC ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 1 117 0.09090909 0.0077285827 3.556149 AGGCAC AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF1 1 625 0.09090909 0.0410007860 1.148773 GCACCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 3 216 0.009523810 0.0010933091 3.122837 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM6 1 191 0.004761905 0.0009673519 2.299426 AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,GAUCAG,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUG,AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAGUG,AAGUGC,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CPEB2 9 1487 0.023809524 0.0074969770 1.667158 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAG,GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGACAG,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAA,UAAAAG,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAU,AUCAAG,AUCAAU,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AAUUUA,ACAUUA,ACUAGG,CAUUAG,CUAAGC,GACUAG,GGAUUA,GUAGCU,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AUCUAA,AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,AUUUUU,CUUUUA,CUUUUC,CUUUUU,UAUUUU,UCCUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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