ENSG00000135387:+:11:34071725:34076642

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000135387:+:11:34071725:34076642 ENSG00000135387 MSTRG.5367.1 + 11 34071726 34076642 472 GGUAAGCUUGAUGAUUACCAGGAACGAAUGAACAAAGGGGAAAGGCUUAAUCAAGAUCAGCUGGAUGCCGUUUCUAAGUACCAGGAAGUCACAAAUAAUUUGGAGUUUGCAAAAGAAUUACAGAGGAGUUUCAUGGCACUAAGUCAAGAUAUUCAGAAAACAAUAAAGAAGACAGCACGUCGGGAGCAGCUUAUGAGAGAAGAAGCUGAACAGAAACGUUUAAAAACUGUACUUGAGCUACAGUAUGUUUUGGACAAAUUGGGAGAUGAUGAAGUGCGGACUGACCUGAAACAAGGUUUGAAUGGAGUGCCAAUAUUGUCCGAAGAGGAGUUGUCAUUGUUGGAUGAAUUCUAUAAGCUAGUAGACCCUGAACGGGACAUGAGCUUGAGGUUGAAUGAACAGUAUGAACAUGCCUCCAUUCACCUGUGGGACCUGCUGGAAGGGAAGGAAAAACCUGUAUGUGGAACCACCUGGUAAGCUUGAUGAUUACCAGGAACGAAUGAACAAAGGGGAAAGGCUUAA circ
ENSG00000135387:+:11:34071725:34076642 ENSG00000135387 MSTRG.5367.1 + 11 34071726 34076642 22 UGGAACCACCUGGUAAGCUUGA bsj
ENSG00000135387:+:11:34071725:34076642 ENSG00000135387 MSTRG.5367.1 + 11 34071526 34071735 210 UUGCACGCUAGCCUGGGUGACGAGCGAAACUCUGUCUCAAAAAAAAAAAAUUUAUGUACUUAAACUGGAAUAUAUCUUAAAAGUUUAUUUAAGUCAAAAUUUGAGACAAACUUAGAGGAUUGUGAGGGUUUUGUCAAGCAUGCUUAAGCUGGUAUAUACCUUCAAAACGGAAUGUAAUUCUUUUUUUUCUUUUAACAUAGGGUAAGCUUG ie_up
ENSG00000135387:+:11:34071725:34076642 ENSG00000135387 MSTRG.5367.1 + 11 34076633 34076842 210 GGAACCACCUGUGAGUAUCACUGUGAUAACUUUGAUUUUAUAACUAGGAAUCUUUAAAAACUAAUUUUCUUAUGUUUAUAGUUCACUUGGAAGAAAAAAAUUAGUUUUUUUUUUUUUUUGGAGACAGAGUCUACUCUGUUGCCCAGGUUGGAGUGUAGUAGUGUGAUCUCAGCUCACAGCAACCUCCGCCUCCCAGGUUUAAGUGAUUUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 286 0.004237288 0.0004159215 3.348758 AACCUG AACCUG
RBM42 1 407 0.004237288 0.0005912752 2.841240 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
PABPC3 5 1234 0.012711864 0.0017897669 2.828332 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA0 1 453 0.004237288 0.0006579386 2.687116 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.006355932 0.0009985015 2.670267 AAGAAG AAGAAG
AGO1 1 548 0.004237288 0.0007956130 2.413003 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPN1 3 1222 0.008474576 0.0017723764 2.257456 AAAAGA,AGAAGA AAAAGA,AGAAGA
ERI1 1 632 0.004237288 0.0009173461 2.207603 UUCAGA UUCAGA,UUUCAG
ZCRB1 4 1605 0.010593220 0.0023274215 2.186337 GAAUUA,GCUUAA,GGCUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
A1CF 4 1642 0.010593220 0.0023810421 2.153476 AUAAUU,CAGUAU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPM 2 999 0.006355932 0.0014492040 2.132843 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM46 12 4554 0.027542373 0.0066011240 2.060869 AAUCAA,AAUGAA,AUCAAG,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 3 1498 0.008474576 0.0021723567 1.963880 AGAGGA,AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
CELF2 4 1886 0.010593220 0.0027346479 1.953714 GUAUGU,UAUGUG,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TARDBP 6 2654 0.014830508 0.0038476365 1.946524 GAAUGA,GAAUGG,GUUUUG,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
EIF4B 2 1179 0.006355932 0.0017100607 1.894056 GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 1 822 0.004237288 0.0011926949 1.828916 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 2 1237 0.006355932 0.0017941145 1.824832 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRP14 1 847 0.004237288 0.0012289250 1.785744 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
SART3 5 2634 0.012711864 0.0038186524 1.735040 AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC1 9 4443 0.021186441 0.0064402624 1.717950 AAAAAC,ACAAAU,ACGAAU,AGAAAA,CAAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPAB 3 1782 0.008474576 0.0025839306 1.713574 AAGACA,ACAAAG,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
TRA2B 15 7329 0.033898305 0.0106226650 1.674067 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAGAA,GAAGGA,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
TRA2A 12 6871 0.027542373 0.0099589296 1.467590 AAAGAA,AAGAAG,AAGAGG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF4 6 3740 0.014830508 0.0054214720 1.451812 AAGAAG,AGAAGA,AGGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ESRP2 3 2150 0.008474576 0.0031172377 1.442873 GGGAAA,GGGAAG,GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBMX 7 4925 0.016949153 0.0071387787 1.247464 AAGAAG,AAGGAA,AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SSB 1 1260 0.004237288 0.0018274462 1.213312 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZRANB2 4 3173 0.010593220 0.0045997733 1.203507 AGGGAA,AGGUUU,GAGGUU,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
CSTF2 2 1967 0.006355932 0.0028520334 1.156113 GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SRSF7 21 14481 0.046610169 0.0209873716 1.151123 AAGAAG,ACGAAU,AGAAGA,AGAGAA,AGAGGA,AGAUCA,AGGAAG,CGAAUG,GAAGAA,GAAUGA,GACAAA,GAGAGA,GGAAGG,GGACAA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
RBM41 1 1318 0.004237288 0.0019115000 1.148436 UACUUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SRSF10 20 13860 0.044491525 0.0200874160 1.147239 AAAAGA,AAAGAA,AAAGGG,AAGAAG,AAGACA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGAGAA,AGAGGA,GACAAA,GAGAAG,GAGAGA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SAMD4A 5 3992 0.012711864 0.0057866714 1.135370 CGGGAC,CUGGAA,CUGGUA,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPH3 10 7688 0.023305085 0.0111429292 1.064516 AAGGGA,AGGGAA,AGGGGA,AUGUGG,AUUGGG,GAAGGG,GGAAGG,GGGAAG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
RBM3 2 2152 0.006355932 0.0031201361 1.026495 AAAACU,GAAACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
LIN28A 5 4315 0.012711864 0.0062547643 1.023148 AGGAGU,GGAGAU,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPL 6 5085 0.014830508 0.0073706513 1.008704 AAACAA,AAAUAA,AACAAA,AAUAAA,CACAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SAMD4A 1 10 0.09090909 0.0007204611 6.97936 CUGGUA CGGGAA,CGGGAC,CGGGCA,CGGGUA,CUGGAA,CUGGCA,CUGGCC,CUGGUA,GCUGGU
ZRANB2 1 45 0.09090909 0.0030128373 4.91523 UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SRSF6 2 68 0.13636364 0.0045192560 4.91523 ACCUGG,CACCUG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
IGHMBP2 9 350 0.023809524 0.0017684401 3.750989 AAAAAA AAAAAA
SYNCRIP 22 1041 0.054761905 0.0052498992 3.382811 AAAAAA,UUUUUU AAAAAA,UUUUUU
PABPC4 9 462 0.023809524 0.0023327287 3.351448 AAAAAA AAAAAA,AAAAAG
ZC3H10 2 140 0.007142857 0.0007103990 3.329800 CGAGCG,GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
CPEB4 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
DDX19B 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
EIF4A3 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
HNRNPU 22 1136 0.054761905 0.0057285369 3.256934 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
EIF4B 3 226 0.009523810 0.0011436921 3.057840 CUUGGA,GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SART3 12 777 0.030952381 0.0039197904 2.981202 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AGO2 9 677 0.023809524 0.0034159613 2.801175 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RALY 15 1117 0.038095238 0.0056328094 2.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
FUS 23 1711 0.057142857 0.0086255542 2.727884 AAAAAA,GGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
U2AF2 14 1071 0.035714286 0.0054010480 2.725190 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
KHDRBS2 13 1051 0.033333333 0.0053002821 2.652825 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
NOVA2 16 1434 0.040476190 0.0072299476 2.485016 ACCACC,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGU,GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPCL1 15 1381 0.038095238 0.0069629182 2.451847 CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC1 14 1321 0.035714286 0.0066606207 2.422773 AAAAAA,AAAAAC,ACAAAC,ACUAAU,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPD 15 1488 0.038095238 0.0075020153 2.344261 AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
NOVA1 14 1428 0.035714286 0.0071997179 2.310489 ACCACC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
KHDRBS1 19 1945 0.047619048 0.0098045143 2.280021 AUUUAA,CAAAAU,UAAAAA,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CPEB2 14 1487 0.035714286 0.0074969770 2.252120 CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ELAVL3 18 1928 0.045238095 0.0097188634 2.218679 AUUUAU,AUUUUA,UAUUUA,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
DAZAP1 27 2878 0.066666667 0.0145052398 2.200391 AAAAAA,AAUUUA,AGGUUG,AGUUUA,UAGGAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 27 2916 0.066666667 0.0146966949 2.181474 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
FXR2 6 730 0.016666667 0.0036829907 2.178016 AGACAA,AGACAG,GACAAA,GACAGA,GACGAG,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAAACG,AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 ACUUAA,AUUUAA,GCUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPK 23 3244 0.057142857 0.0163492543 1.805348 AAAAAA,GCCCAG,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ELAVL1 23 3309 0.057142857 0.0166767432 1.776736 AUUUAU,UAGUUU,UAUUUA,UGAUUU,UUAGUU,UUAUUU,UUGAUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ELAVL2 56 9826 0.135714286 0.0495112858 1.454743 AAUUUA,AAUUUG,AAUUUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,CUUUAA,CUUUUA,CUUUUU,GAUUUU,GUUUUU,UAAUUU,UAUAUA,UAUGUU,UAUUUA,UCUUAU,UCUUUU,UGAUUU,UUAAGU,UUAGUU,UUAUGU,UUAUUU,UUCUUU,UUGAUU,UUUAAG,UUUAUA,UUUAUG,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PCBP1 27 4891 0.066666667 0.0246473196 1.435535 AAAAAA,AAAUUA,CCUCCC,CUUAAA,UUAGAG,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
FMR1 30 5430 0.073809524 0.0273629585 1.431583 AAAAAA,AGCGAA,AGCUGG,AGGAAU,AGGAUU,CAUAGG,GAGCGA,GAGGAU,UGGAGU,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
PPIE 51 9262 0.123809524 0.0466696896 1.407565 AAAAAA,AAAAAU,AAAAUU,AAAUUA,AAAUUU,AAUAUA,AAUUUA,AAUUUU,AUAUAU,AUUUAA,AUUUAU,AUUUUA,UAAAAA,UAAUUU,UAUAUA,UAUUUA,UUAAAA,UUAUAA,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPA1 34 6340 0.083333333 0.0319478033 1.383177 AAAAAA,AAUUUA,AGAGGA,AGGGUU,AUAGGG,AUUUAA,AUUUAU,UAGGAA,UAGGGU,UUAUUU,UUUAUA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TIA1 27 5140 0.066666667 0.0259018541 1.363910 AUUUUC,CUUUUA,CUUUUU,GUUUUG,GUUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TIAL1 29 5597 0.071428571 0.0282043531 1.340583 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,CUUUUA,CUUUUU,GUUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM5 11 2359 0.028571429 0.0118903668 1.264780 AAAAAA,AGGGUA,GAGGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGAA,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAGG,UGUGAG,UGUGAU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
PCBP2 19 4164 0.047619048 0.0209844821 1.182216 AAAUUA,CCUCCC,CUCCCA,CUUAAA,UUAGAG,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
RBM24 3 888 0.009523810 0.0044790407 1.088349 AGUGUG,GAGUGU,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUAAU,CUACUC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SFPQ 29 7087 0.071428571 0.0357114067 1.000116 AGAGGA,GAAGAA,GGAAGA,GGUAAG,GUAAUU,GUAGUG,GUGAUU,UAAUUU,UAGUGU,UAGUUU,UGAUUU,UGGAAG,UGGAGA,UUAGUU,UUGAUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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