ENSG00000111880:-:6:88769773:88904955

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000111880:-:6:88769773:88904955 ENSG00000111880 ENST00000369485 - 6 88890495 88904955 453 UAUCGAAGCAGCAGUUGCUACUUUUGCCCAAGCCAGACCACCAGGAAUCUACAAGGGUGAUUAUUUGAAGGAACUUUUUCGUCGGUAUGGUGACAUAGAGGAAGCACCACCCCCACCUCUAUUGCCAGAUUGGUGUUUUGAGGAUGAUGAAGACGAAGAUGAGGAUGAGGAUGGAAAGAAGGAAUCAGAACCCGGGUCAAGUGCUUCUUUUGGCAAAAGGAGAAAAGAACGGUUAAAACUGGGCGCUAUUUUCUUGGAAGGUGUUACUGUUAAAGGUGUAACUCAAGUAACAACACAACCAAAGUUAGGAGAGGUACAGCAGAAGUGUCAUCAAUUCUGUGGCUGGGAAGGGUCUGGAUUCCCUGGAGCACAGCCUGUUUCCAUGGACAAGCAAAAUAUUAAACUUUUAGACCUGAAGCCAUACAAAGUAAGCUGGAAAGCAGAUGGUACUCGUAUCGAAGCAGCAGUUGCUACUUUUGCCCAAGCCAGACCACCAGGAAUCU circ
ENSG00000111880:-:6:88769773:88904955 ENSG00000111880 ENST00000369485 - 6 88890495 88904955 22 GAUGGUACUCGUAUCGAAGCAG bsj
ENSG00000111880:-:6:88769773:88904955 ENSG00000111880 ENST00000369485 - 6 88904946 88905155 210 GAAUACCUUAUAUUAAAACCUUUUCAGAAUGAAUGUGUCCCUUAAUAGAUUGAAUGACUUGAGGGUGAGGAUUGUGAUUUGCCCAUUUUAUAAACUUCUGUUGUACUUUAUAUGGAGCCUUGAAUAUAAUAAGUGAGUUUUUGAUAAGCCUGCAUAAAUAGAGGAUAGCGAGGAAAUUGCAUGGUGUUUGUUUCCUAUAGUAUCGAAGCA ie_up
ENSG00000111880:-:6:88769773:88904955 ENSG00000111880 ENST00000369485 - 6 88890295 88890504 210 AUGGUACUCGGUAAGUUAGACUUCUAAAAAAAUUACACAAAUAACCCUAAUGCUUGAAGAAUAUUGUUUUAUUGUUAGAAAAGUUUACACUCUUGAGAGUGUGAAUUUCUAAUGUGAAUAGCAAAAUAAAUGUUUCAAAAAUUAUAUAUUUUUGGUUUUGCUAGUGUUCUAAGCUGUAUAGCACAAGUUAUCUCUCAUUCUGCUAAAUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.006622517 0.0004927293 3.748512 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPM 4 999 0.011037528 0.0014492040 2.929084 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
G3BP2 6 1644 0.015452539 0.0023839405 2.696424 AGGAUG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
AGO1 1 548 0.004415011 0.0007956130 2.472278 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
IGF2BP1 2 831 0.006622517 0.0012057377 2.457463 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBMX 16 4925 0.037527594 0.0071387787 2.394203 AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,GAAGGA,GGAAGG,GUAACA,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
NONO 4 1498 0.011037528 0.0021723567 2.345084 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF11 1 688 0.004415011 0.0009985015 2.144581 AAGAAG AAGAAG
PPRC1 1 780 0.004415011 0.0011318283 1.963762 GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
EIF4B 2 1179 0.006622517 0.0017100607 1.953332 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SSB 2 1260 0.006622517 0.0018274462 1.857551 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SRP14 1 847 0.004415011 0.0012289250 1.845020 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF4 3 1782 0.008830022 0.0025839306 1.772850 GGUGUU,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 3 1830 0.008830022 0.0026534924 1.734525 AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CSTF2 3 1967 0.008830022 0.0028520334 1.630426 GUGUUU,GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
YBX2 2 1480 0.006622517 0.0021462711 1.625547 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 1 991 0.004415011 0.0014376103 1.618744 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
TRA2B 13 7329 0.030905077 0.0106226650 1.540698 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAAGA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZRANB2 5 3173 0.013245033 0.0045997733 1.525817 AAAGGU,AGGUAC,CGGUAU,GGGUGA,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM3 3 2152 0.008830022 0.0031201361 1.500808 AAAACU,AAGACG,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MSI1 4 2770 0.011037528 0.0040157442 1.458678 AGGAAG,AGUAAG,AGUUAG,UAGGAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
RBM5 11 6879 0.026490066 0.0099705232 1.409710 AAGGAA,AAGGAG,AAGGUG,AGGGUG,CAAGGG,GAAGGA,GAAGGG,GAAGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
RC3H1 2 1786 0.006622517 0.0025897275 1.354579 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPN1 1 1222 0.004415011 0.0017723764 1.316732 AAAAGA AAAAGA,AGAAGA
ZFP36L2 1 1277 0.004415011 0.0018520827 1.253269 UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 1 1318 0.004415011 0.0019115000 1.207712 UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
FXR2 4 3434 0.011037528 0.0049780156 1.148774 AGACGA,GACAAG,GACGAA,GGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
FMR1 28 20291 0.064017660 0.0294072466 1.122298 AAGGAA,AAGGAG,ACUGGG,AGCAGC,AGCUGG,AGGAAG,AGGAAU,AGGAUG,CUGGGC,GAAGGA,GAAGGG,GACAAG,GAGGAU,GCUGGG,GGACAA,GGCUGG,GUGGCU,UGAGGA,UGGCUG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
CELF5 1 1415 0.004415011 0.0020520728 1.105335 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TIA1 12 9206 0.028697572 0.0133428208 1.104865 AUUUUC,CUUUUA,CUUUUG,CUUUUU,GUUUUG,UAUUUU,UUAUUU,UUUUCG,UUUUCU,UUUUGG,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ESRP2 2 2150 0.006622517 0.0031172377 1.087111 GGGAAG,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
U2AF2 1 1477 0.004415011 0.0021419234 1.043510 UUUUUC UUUUCC,UUUUUC,UUUUUU
RBM46 5 4554 0.013245033 0.0066011240 1.004668 AUCAAU,AUGAAG,AUGAUG,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAU,CUAUAG,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUA,AGGAUU,GGAUAG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TARDBP 9 1034 0.023809524 0.0052146312 2.190902 GAAUGA,GAAUGU,GUGAAU,GUUUUG,UGAAUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA AAAAAA,AAAAAG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAAUAA,AAUAAA,ACACAA,CACAAA,CACAAG,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,AGUGUG,GAGUGU,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PPIE 49 9262 0.119047619 0.0466696896 1.350981 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUAU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAUA,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAAUU,UAAUAA,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAUA,UUAUAA,UUAUAU,UUUAUA,UUUAUU,UUUUAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAAAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA,AGAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AAUAAA,AUAAAC,AUUAAA,UAAAAC,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA,ACAAAU,AGAAAA,CAAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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