ENSG00000239900:+:22:40353072:40363071

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000239900:+:22:40353072:40363071 ENSG00000239900 ENST00000623063 + 22 40353073 40363071 744 GACUUGAUUAUUCUUAGAAAUGCACUUGACCUGCUUUUGCCAAAGCUUGCCAGAGUGAUCUCUCGGCUUGCCGACUUUGCUAAGGAACGAGCCAGUCUACCCACAUUAGGUUUCACACAUUUCCAGCCUGCACAGCUGACCACAGUUGGGAAACGUUGCUGUCUUUGGAUUCAGGAUCUUUGCAUGGAUCUCCAGAACUUGAAGCGUGUCCGAGAUGACCUGCGCUUCCGGGGAGUAAAGGGUACCACUGGCACUCAGGCCAGUUUCCUGCAGCUCUUUGAGGGAGAUGACCAUAAGGUAGAGCAGCUUGACAAGAUGGUGACAGAAAAGGCAGGAUUUAAGAGAGCUUUCAUCAUCACAGGGCAGACAUAUACACGAAAAGUGGAUAUUGAAGUACUGUCUGUGCUGGCUAGCUUGGGGGCAUCAGUGCACAAGAUUUGCACCGACAUACGCCUCCUGGCAAACCUCAAGGAGAUGGAGGAACCCUUUGAAAAACAGCAGAUUGGCUCAAGUGCGAUGCCAUAUAAGCGGAAUCCCAUGCGUUCAGAACGUUGCUGCAGUCUUGCCCGCCACCUGAUGACCCUUGUCAUGGACCCGCUACAGACAGCAUCUGUCCAGUGGUUUGAACGCACACUGGAUGAUAGUGCCAACCGACGGAUCUGUUUGGCCGAGGCAUUUCUUACCGCAGAUACUAUAUUGAAUACGCUGCAGAACAUUUCUGAAGGAUUGGUCGUGUACCCCAAAGACUUGAUUAUUCUUAGAAAUGCACUUGACCUGCUUUUGCCAAAGCUUGC circ
ENSG00000239900:+:22:40353072:40363071 ENSG00000239900 ENST00000623063 + 22 40353073 40363071 22 UGUACCCCAAAGACUUGAUUAU bsj
ENSG00000239900:+:22:40353072:40363071 ENSG00000239900 ENST00000623063 + 22 40352873 40353082 210 ACUGUUAAGCUGGUGUGCUUUUCAAACAGUAAUCAGGAAAGAACAACUUGUGUUAGUAUUUUCUGGCGUGCUUAGUGGGUUGGUAGUGGUGAUAUAGGCUGGUAGCUGAGCAACCCAGCCUUUCUGGCCAAAAAGUGUUAUGUAAUAAUAUUGUUUGAGCAAAGCUGCUAAAUAUAAGAUCAUUGCAUUUUCUUUCGUAGGACUUGAUUA ie_up
ENSG00000239900:+:22:40353072:40363071 ENSG00000239900 ENST00000623063 + 22 40363062 40363271 210 GUACCCCAAAGUAAGAAGCCUCAAUUCAAAAGUAAAGUACUAGGGAGGGGUUAGAAUGUGGGAGGGAGGGUGCUCUGGGGUGUGUUGAGGGAGCUGUAUUCUGAUCCGAUAGGCAUUCUUCCCACCCGAGCUCAUCCUUCAGUUCAUAAGCUCUAGGGAACUAGCUCUGUGGAAUUCAUAGACACAUUAUAGAAACAGAAAAAGAAGUAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.002688172 0.0004564992 2.557941 GACAGA GACAGA
RBMY1A1 2 489 0.004032258 0.0007101099 2.505474 ACAAGA ACAAGA,CAAGAC
TUT1 2 678 0.004032258 0.0009840095 2.034844 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX2 1 452 0.002688172 0.0006564894 2.033782 UGCAUG UGACUG,UGCAUG
RBMS1 1 497 0.002688172 0.0007217036 1.897147 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
AGO1 1 548 0.002688172 0.0007956130 1.756487 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM8A 1 611 0.002688172 0.0008869128 1.599761 UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ERI1 1 632 0.002688172 0.0009173461 1.551087 UUCAGA UUCAGA,UUUCAG
RBMS3 3 1283 0.005376344 0.0018607779 1.530720 CAUAUA,CUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
G3BP2 4 1644 0.006720430 0.0023839405 1.495205 AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPM 2 999 0.004032258 0.0014492040 1.476327 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM3 5 2152 0.008064516 0.0031201361 1.369979 AAGACU,AAUACG,AUACUA,GAAACG,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 3 1498 0.005376344 0.0021723567 1.307364 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SNRPA 17 7380 0.024193548 0.0106965744 1.177474 ACCUGC,AGGAGA,AUGCAC,CCUGCU,GAGCAG,GGAGAU,GUUUCC,UCCUGC,UGCACA,UGCACC,UUCCUG,UUGCAC,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
PABPC3 2 1234 0.004032258 0.0017897669 1.171816 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SSB 2 1260 0.004032258 0.0018274462 1.141759 CUGUUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 2 1283 0.004032258 0.0018607779 1.115682 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPAB 2 20 0.13636364 0.001375426 6.631437 AAAGAC,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA
RBM3 1 20 0.09090909 0.001375426 6.046474 AAGACU AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
SRSF10 2 160 0.13636364 0.010544931 3.692837 AAAGAC,CAAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 CAAAGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
ZFP36 1 126 0.09090909 0.008318051 3.450107 CAAAGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 AAAGAC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 82 0.007142857 0.0004181782 4.094312 AAGAAG AAGAAG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
CELF4 6 776 0.016666667 0.0039147521 2.089973 GGUGUG,GUGUGU,GUGUUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAGUG,GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 1 283 0.004761905 0.0014308746 1.734641 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
TRA2B 9 1447 0.023809524 0.0072954454 1.706471 AAAGAA,AAGAAC,AAGAAG,AGGAAA,AUAAGA,GAAAGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAG AAAAAA,AAAAAG
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,GUGUUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGCC,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
RBMX 7 1316 0.019047619 0.0066354293 1.521349 AAGAAG,AAGUAA,AAGUGU,AGUGUU,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUGUUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AAUGUG,AGGGAA,AUGUGG,GAAUGU,GAGGGG,GGAGGG,GGGAGG,GGGUGU,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAAG,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGGUG,GUGUUG,UGUGGG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPH2 15 3198 0.038095238 0.0161174929 1.240983 AAUGUG,AGGGAA,AUGUGG,CUGGGG,GAAUGU,GAGGGG,GGAGGG,GGGAGG,GGGUGU,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUCUGG,GGUUAG,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
HNRNPH1 15 3406 0.038095238 0.0171654575 1.150102 AAUGUG,AGGGAA,AUGUGG,CUGGGG,GAAUGU,GAGGGG,GGAGGG,GGGAGG,GGGUGU,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPF 14 3360 0.035714286 0.0169336961 1.076604 AAUGUG,AGGGAA,AUGUGG,CUGGGG,GAAUGU,GAGGGG,GGAGGG,GGGAGG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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