ENSG00000085415:+:18:12951854:12978892

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000085415:+:18:12951854:12978892 ENSG00000085415 MSTRG.15529.1 + 18 12951855 12978892 650 GUCUGGGAUAAAAGUGAAAGUGGUGAUUGGCAUUGUACUGCUAGCUGGAAGACACAUAGUGGAUCUGUAUGGCGUGUGACAUGGGCCCAUCCUGAAUUUGGGCAGGUUUUGGCUUCCUGUUCUUUUGACCGAACAGCUGCUGUAUGGGAAGAAAUAGUAGGAGAAUCAAAUGAUAAACUGCGAGGACAGAGCCACUGGGUUAAAAGGACAACUCUGGUGGAUAGCAGAACAUCUGUUACUGAUGUGAAGUUUGCUCCCAAGCACAUGGGUCUUAUGUUAGCAACCUGUUCCGCAGAUGGUAUAGUAAGAAUCUAUGAGGCACCAGAUGUUAUGAAUCUCAGCCAGUGGUCUUUGCAGCAUGAGAUCUCAUGUAAGCUAAGCUGUAGUUGUAUUUCUUGGAACCCUUCAAGCUCUCGUGCUCAUUCCCCCAUGAUCGCCGUAGGAAGUGAUGACAGUAGCCCCAACGCAAUGGCCAAGGUUCAGAUUUUUGAAUAUAAUGAAAACACCAGGAAAUAUGCAAAAGCUGAAACUCUUAUGACAGUCACUGAUCCUGUUCAUGAUAUUGCAUUCGCUCCAAAUUUGGGAAGAUCUUUCCAUAUUCUAGCAAUAGCGACCAAAGAUGUGAGAAUUUUUACAUUAAAGCCUGUGAGGUCUGGGAUAAAAGUGAAAGUGGUGAUUGGCAUUGUACUGCUAGCUGGAA circ
ENSG00000085415:+:18:12951854:12978892 ENSG00000085415 MSTRG.15529.1 + 18 12951855 12978892 22 AAGCCUGUGAGGUCUGGGAUAA bsj
ENSG00000085415:+:18:12951854:12978892 ENSG00000085415 MSTRG.15529.1 + 18 12951655 12951864 210 UGCUGGGAUUACAGGCAUGAGCCAUCGCACCCAGCCUCUCAAUAAAUACUUAAUUGAAUGAAUGAAUGUUUACUUGCUGAUUGUGUUCUUUUGUUAACUAUAUGUUCACCGCUUUCCUUGUACACUGAUUCAGUCUUAUAGUUUUUGUAUCAAUUUGUAGGAAUUUUUGUAUAAAAUAUCUGCCUUUUAUUUUCUUAUAGGUCUGGGAUA ie_up
ENSG00000085415:+:18:12951854:12978892 ENSG00000085415 MSTRG.15529.1 + 18 12978883 12979092 210 AGCCUGUGAGGUGAGUUUUAGAAGCAUUUAUGAAUUUGAAAAUACUCUUGCCUUCUGAUUACCUUUGUUUGUGGAGGAGAGAGUAGAGGUAACUAUGAUUUGGUUUAUAUUUCUGCUCUGGAAGUUUUACUUAAAAAUGUAAACUUUGAAAUGUUUUUUAAAAAUGGUCUUUUACAGUUACUUUUUUUUCUUUCUUUUUUUUUUUAUUGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 2 411 0.004615385 0.0005970720 2.950474 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
NXF1 1 286 0.003076923 0.0004159215 2.887105 AACCUG AACCUG
CNOT4 1 314 0.003076923 0.0004564992 2.752804 GACAGA GACAGA
HNRNPA0 1 453 0.003076923 0.0006579386 2.225464 AGUAGG AAUUUA,AGAUAU,AGUAGG
SNRPB2 3 991 0.006153846 0.0014376103 2.097816 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM28 2 822 0.004615385 0.0011926949 1.952226 AGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AGO1 1 548 0.003076923 0.0007956130 1.951350 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SRP14 2 847 0.004615385 0.0012289250 1.909054 CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
MSI1 8 2770 0.013846154 0.0040157442 1.785746 AGGAAG,AGUAAG,AGUAGG,UAGGAA,UAGGAG,UAGUAA,UAGUAG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ERI1 1 632 0.003076923 0.0009173461 1.745950 UUCAGA UUCAGA,UUUCAG
RBFOX1 2 1077 0.004615385 0.0015622419 1.562833 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
YBX2 3 1480 0.006153846 0.0021462711 1.519656 AACAUC,ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
KHDRBS2 4 1858 0.007692308 0.0026940701 1.513629 AUAAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
EIF4B 2 1179 0.004615385 0.0017100607 1.432403 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 2 1234 0.004615385 0.0017897669 1.366679 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 2 1237 0.004615385 0.0017941145 1.363179 AAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.003076923 0.0012057377 1.351572 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ESRP2 4 2150 0.007692308 0.0031172377 1.303148 GGGAAG,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM41 2 1318 0.004615385 0.0019115000 1.271746 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPAB 3 1782 0.006153846 0.0025839306 1.251921 AAGACA,AUAGCA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF6 5 2997 0.009230769 0.0043447134 1.087190 GUGAGG,GUGAUG,GUGGUG,UGUGAG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM46 8 4554 0.013846154 0.0066011240 1.068702 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUGAAA,AUGAAU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPCL1 3 2062 0.006153846 0.0029897078 1.041484 AUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO1 1 6 0.09090909 0.0004584752 7.631437 UGAGGU AGGUAG,GAGGUA,UGAGGU
CELF6 1 7 0.09090909 0.0005239717 7.438792 GUGAGG GUGAGG,GUGUUG,UGUGGG,UGUGUG
YBX1 1 19 0.09090909 0.0013099293 6.116864 GGUCUG AACCAC,ACACCA,ACAUCU,ACCACC,CACCAC,CAGCAA,CCACCA,CCAGCA,CCUGCG,CUGCGG,GAUCUG,GCCUGC,UCCAGC,UGCGGU
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 AGGUCU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SFPQ 1 153 0.09090909 0.0100864553 3.172005 GGUCUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TUT1 4 230 0.011904762 0.0011638452 3.354568 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
RBM41 6 502 0.016666667 0.0025342604 2.717329 AUACUU,UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
KHDRBS2 12 1051 0.030952381 0.0053002821 2.545909 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGA,GAGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPCL1 15 1381 0.038095238 0.0069629182 2.451847 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
U2AF2 11 1071 0.028571429 0.0054010480 2.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
CPEB2 14 1487 0.035714286 0.0074969770 2.252120 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPC 18 2006 0.045238095 0.0101118501 2.161491 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 17 1945 0.042857143 0.0098045143 2.128018 AUAAAA,UAAAAA,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ELAVL4 25 2916 0.061904762 0.0146966949 2.074559 AUUUAU,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS3 13 1646 0.033333333 0.0082980653 2.006119 AAUAAA,AUAAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
NOVA1 11 1428 0.028571429 0.0071997179 1.988561 UCAGUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 11 1434 0.028571429 0.0072299476 1.982516 AGGCAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ELAVL3 15 1928 0.038095238 0.0097188634 1.970751 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL1 26 3309 0.064285714 0.0166767432 1.946661 AUUUAU,UAGUUU,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGGUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 ACUUAA,GGAUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TIA1 37 5140 0.090476190 0.0259018541 1.804483 AUUUUC,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUGAA,AUCAAU,AUGAAU,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL2 70 9826 0.169047619 0.0495112858 1.771600 AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUUAU,AUUUUC,AUUUUU,CUUAUA,CUUUCU,CUUUUA,CUUUUU,GUUUUA,GUUUUU,UACUUU,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UUAAUU,UUACUU,UUAUAU,UUAUUG,UUAUUU,UUCUUU,UUGUAU,UUUACU,UUUAUA,UUUAUG,UUUAUU,UUUCUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAUUUU,AGUUUU,AUUUUC,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 6 1034 0.016666667 0.0052146312 1.676328 GAAUGA,GAAUGU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PUM2 4 764 0.011904762 0.0038542926 1.627001 UAAAUA,UGUAAA,UGUACA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
FUS 10 1711 0.026190476 0.0086255542 1.602353 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PTBP1 41 8003 0.100000000 0.0403264813 1.310201 ACUUUU,AUUUUC,AUUUUU,CCUUUU,CUCUUG,CUUUCC,CUUUCU,CUUUUU,GUCUUA,GUCUUU,UACUUU,UAUUUU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCUU,UUCUUU,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AGGUAA,UAGGAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAU,AAAAUA,AAAUAU,AAUAAA,AAUUUU,AUAAAA,AUAAAU,AUAUUU,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAUAAA,UAUAUU,UAUUUU,UUAAAA,UUAAUU,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SFPQ 32 7087 0.078571429 0.0357114067 1.137620 AGAGAG,AGAGGU,CAGGCA,CUGGGA,GAAGCA,GAGGUA,GGAGAG,GGAGGA,GGUCUG,GUCUGG,UAAUUG,UAGUUU,UCUGGA,UGAUUG,UGAUUU,UGGAAG,UGGAGG,UGGUCU,UGGUUU,UUAAUU,UUGGUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUGUU,CUUGUA,UAAAUA,UGUAAA,UGUACA,UGUAUA,UUGUAC,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUUUGU,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGA,GGAGGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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