ENSG00000092020:-:14:35107303:35110629

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000092020:-:14:35107303:35110629 ENSG00000092020 MSTRG.9376.1 - 14 35107304 35110629 387 CUGCCUGCUGAAGAUGAAGUCUUACUACAGAAAUUAAGAGAGGAAUCAAGAGCUGUCUUUCUACAAAGAAAAAGCAGAGAACUGUUAGAUAAUGAAGAAUUACAGAACUUAUGGUUUUUGCUGGACAAACACCAGACACCACCUAUGAUUGGAGAGGAAGCGAUGAUCAAUUACGAAAACUUUUUGAAGGUUGGUGAAAAGGCUGGAGCAAAGUGCAAGCAAUUUUUCACAGCAAAAGUCUUUGCUAAACUCCUUCAUACAGAUUCAUAUGGAAGAAUUUCCAUCAUGCAGUUCUUUAAUUAUGUCAUGAGAAAAGUUUGGCUUCAUCAAACAAGAAUAGGACUCAGUUUAUAUGAUGUCGCUGGGCAGGGGUACCUUCGGGAAUCUCUGCCUGCUGAAGAUGAAGUCUUACUACAGAAAUUAAGAGAGGAAUCAAG circ
ENSG00000092020:-:14:35107303:35110629 ENSG00000092020 MSTRG.9376.1 - 14 35107304 35110629 22 UUCGGGAAUCUCUGCCUGCUGA bsj
ENSG00000092020:-:14:35107303:35110629 ENSG00000092020 MSTRG.9376.1 - 14 35110620 35110829 210 UUUUCAGGGCAGAGAUCCAGCCUUUCUGAUCACCGAUUCUCUGUGGAUCAGUUUUUGUUAAACAAAUGUUAAGCACAAUUAAGGUGAGAUACAAGAAAUAAUUCGAGGCGGUGGCAUACAGUUAUUUUAUGAGGCCACAUACAUUUUAUAGGAUCCAGUAGUCUAAAAUUUACAUGUAGAAAUUUACCUUGUAUUUUCAGCUGCCUGCUG ie_up
ENSG00000092020:-:14:35107303:35110629 ENSG00000092020 MSTRG.9376.1 - 14 35107104 35107313 210 UCGGGAAUCUGUAAGUGUUAACCUUAUAGAUAUUAUAUUAACUCUUAUAGACACUAAAAUGUAAACUGUAGUUAUCACUGGGUGUUGGGAUUACAGGCUGUUCUCAUAAUACUUUGUUUUAUUUCUGUCUGUGUGUGUUUGUGUGUACAUAUUUAGUUUUACUGUAACAAAGCAACUUGUACACUUUCAACUUUUAAAAUUGAACAUCAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 6 1498 0.018087855 0.0021723567 3.057688 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBMY1A1 1 489 0.005167959 0.0007101099 2.863480 ACAAGA ACAAGA,CAAGAC
SNRNP70 3 1237 0.010335917 0.0017941145 2.526323 AAUCAA,AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM46 13 4554 0.036175711 0.0066011240 2.454238 AAUCAA,AAUGAA,AUCAAA,AUCAAG,AUCAAU,AUCAUG,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RALY 3 1553 0.010335917 0.0022520629 2.198347 UUUUUC,UUUUUG UUUUUC,UUUUUG,UUUUUU
PABPC5 5 2400 0.015503876 0.0034795387 2.155661 AGAAAA,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 1642 0.010335917 0.0023810421 2.118001 UAAUUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPCL1 4 2062 0.012919897 0.0029897078 2.111518 AUUUUU,CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPLL 7 3534 0.020671835 0.0051229360 2.012624 ACAAAC,ACACCA,CAAACA,CACCAC,CAUACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZNF638 3 1773 0.010335917 0.0025708878 2.007328 GGUUGG,GUUCUU,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 3 1782 0.010335917 0.0025839306 2.000027 ACAAAG,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRPB2 1 991 0.005167959 0.0014376103 1.845922 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPC 6 3471 0.018087855 0.0050316361 1.845922 AUUUUU,CUUUUU,GGGUAC,UUUUUC,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SART3 4 2634 0.012919897 0.0038186524 1.758459 AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF4 6 3740 0.018087855 0.0054214720 1.738265 AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ZCRB1 2 1605 0.007751938 0.0023274215 1.735824 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PABPC1 7 4443 0.020671835 0.0064402624 1.682475 ACAAAC,AGAAAA,CAAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 2 1830 0.007751938 0.0026534924 1.546665 AAAGUG,AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC3 1 1234 0.005167959 0.0017897669 1.529823 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 1 1251 0.005167959 0.0018144033 1.510099 AAAAAG AAAAAA,AAAAAG
ENOX1 4 3195 0.012919897 0.0046316558 1.479995 AUACAG,CAGACA,CAUACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
TRA2A 9 6871 0.025839793 0.0099589296 1.375532 AAAGAA,AAGAAA,AGAGGA,AGGAAG,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
IGF2BP3 6 4815 0.018087855 0.0069793662 1.373853 AAACAC,AAACUC,ACAAAC,CAAACA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPL 6 5085 0.018087855 0.0073706513 1.295157 AAACAA,AAACAC,ACACCA,CACCAC,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
U2AF2 1 1477 0.005167959 0.0021419234 1.270688 UUUUUC UUUUCC,UUUUUC,UUUUUU
CPEB2 2 2261 0.007751938 0.0032780993 1.241697 AUUUUU,CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
SAMD4A 4 3992 0.012919897 0.0057866714 1.158789 CGGGAA,CUGGAC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SRSF5 10 8869 0.028423773 0.0128544391 1.144831 AGGAAG,CACAGC,GAAGAA,GAGGAA,GGAAGA,UACAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
TRA2B 8 7329 0.023255814 0.0106226650 1.130446 AAAGAA,AAGAAU,AGGAAG,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF10 16 13860 0.043927649 0.0200874160 1.128837 AAAGAA,AAGAAA,AAGAGA,ACAAAG,AGAGAA,AGAGAG,AGAGGA,CAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF3 18 16536 0.049095607 0.0239654858 1.034636 AACUUU,ACCACC,ACUACA,AUUCAU,CACCAC,CAGAGA,CAUCAA,CAUCAU,CUACAA,CUACAG,CUUCAU,GAUCAA,GCUUCA,UACAAA,UCAUCA,UUACGA,UUCAUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
YBX1 7 7119 0.020671835 0.0103183321 1.002457 ACACCA,ACCACC,CACCAC,CAGCAA,CAUCAU,GCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NELFE 1 8 0.09090909 0.0005894682 7.268867 UCUCUG CUCUGG,CUGGCU,CUGGUU,UCUGGC,UCUGGU
SRSF6 1 68 0.09090909 0.0045192560 4.330267 UCUCUG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CELF5 9 669 0.023809524 0.0033756550 2.818299 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 10 776 0.026190476 0.0039147521 2.742049 GGUGUU,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 6 502 0.016666667 0.0025342604 2.717329 AUACAU,AUACUU,UACAUG,UACAUU,UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUUCAG UUCAGA,UUUCAG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CELF1 13 1097 0.033333333 0.0055320435 2.591081 CUGUCU,GUGUGU,GUGUUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CSTF2 11 1022 0.028571429 0.0051541717 2.470761 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGU,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAUC,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PUM2 7 764 0.019047619 0.0038542926 2.305073 GUACAU,UACAUA,UAGAUA,UGUAAA,UGUACA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CELF2 8 881 0.021428571 0.0044437727 2.269679 GUCUGU,GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ENOX1 6 756 0.016666667 0.0038139863 2.127594 AUACAG,CAUACA,UAGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,AUCAGU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM24 6 888 0.016666667 0.0044790407 1.895704 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TARDBP 6 1034 0.016666667 0.0052146312 1.676328 GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACAUAC,CAUACA,GCAUAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
QKI 5 904 0.014285714 0.0045596534 1.647577 ACACUA,AUUAAC,CACUAA,CUCAUA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAACAA,AAAUAA,AACAAA,ACAUAC,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUGUU,CUUGUA,GUACAU,UACAUA,UAGAUA,UGUAAA,UGUACA,UGUAGA,UUGUAC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAUUUA,AGAUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGUUG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AGUUUU,AUUUUA,AUUUUC,CAGUUU,CUUUUA,GUUUUU,UAUUUU,UCAGUU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 AACAUC,ACAUCA,CAUCAU,GCCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 UAGUUU,UAUUUA,UAUUUU,UGUUUU,UUAGUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL2 42 9826 0.102380952 0.0495112858 1.048118 AAUUUA,AUACUU,AUAUUU,AUUUAC,AUUUAG,AUUUUA,AUUUUC,CAUUUU,CUUAUA,CUUUCU,CUUUUA,GUUUUA,GUUUUU,UACUUU,UAGUUA,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCUUAU,UGUAUU,UUAGUU,UUAUAU,UUAUUU,UUGUAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUUAA,UUUUAU,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHSRP 24 5764 0.059523810 0.0290457477 1.035140 AUAUUU,AUUUUA,CAGCCU,CUGCCU,CUGUGU,GUGUGU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UGUGUA,UGUGUG,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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