ENSG00000198879:-:10:7367648:7381949

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198879:-:10:7367648:7381949 ENSG00000198879 ENST00000397167 - 10 7367649 7381949 487 GUAAUUUUUUCUGCAGGAUGAAUUAAGAGAAGAGACACUUGCUCAUCAGGCAUGGAGAGCACUUUGUCAGCUUCCAAUAUGCAAGACCCUUCAUCUUCACCCUUGGAAAAGUGUCUCGGCUCAGCUAAUGGAAAUGGAGACCUUGAUUCUGAAGAAGGCUCAAGCUUGGAGGAAACUGGCUUUAACUGGGGAGAAUAUUUGGAAGAGACAGGAGCAAGUGCUGCUCCCCACACAUCAUUCAAACACGUUGAAAUCAGCAUUCAGAGCAACUUCCAGCCAGGAAUGAAAUUGGAAGUGGCUAAUAAGAACAACCCGGACACGUACUGGGUGGCCACGAUCAUUACCACGUGCGGGCAGCUGCUGCUUCUGCGCUACUGCGGUUACGGGGAGGACCGCAGGGCCGACUUCUGGUGUGACGUAGUCAUCGCGGAUUUGCACCCCGUGGGGUGGUGCACACAGAACAACAAGGUGUUGAUGCCGCCGGACGGUAAUUUUUUCUGCAGGAUGAAUUAAGAGAAGAGACACUUGCUCAUCAGG circ
ENSG00000198879:-:10:7367648:7381949 ENSG00000198879 ENST00000397167 - 10 7367649 7381949 22 GCCGCCGGACGGUAAUUUUUUC bsj
ENSG00000198879:-:10:7367648:7381949 ENSG00000198879 ENST00000397167 - 10 7381940 7382149 210 GCAUGAGCCACUGCACCUGGCCUCAGUGUACUAGAAUACUUAUUCCUGGUAUUUUCUAUUACAACAUUAUGUUGCAUCUUGAAAGUUAUAAUGAAAUGGUAGUGGCACUAAUAAGGUUUUUUUUAAACAAAAUUAAAAAUAAGUGAAUAUAAUCAAUAUGAUUAAACUGCUCUGAUUUUUUUUUUUUUGAUUGCUCUUAGGUAAUUUUUU ie_up
ENSG00000198879:-:10:7367648:7381949 ENSG00000198879 ENST00000397167 - 10 7367449 7367658 210 CCGCCGGACGGUGAGCCCCUGUUUCAAAGGCUUCGAUUUACGAGCCGCCAUCCUUCAUGACGCCUGUAAUUUUGCAAGGAGCAGAGAGAACCUUGCGUAGAAUCCCUAAUGGUCUUAGUGCAAAGGUCUCACAGUUCUUUCAGAGUGGUUUCUCAGGUUUCCUUAGCUGGAGGGAGAUCAGUGCAUUUUCAGAUGUCAGAGCUGGUGCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.004106776 0.0003898359 3.397068 CGGGCA AUCGGG,CGGGCA,UCGGGC
ANKHD1 1 339 0.004106776 0.0004927293 3.059139 GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
EIF4B 5 1179 0.012320329 0.0017100607 2.848921 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
IFIH1 3 904 0.008213552 0.0013115296 2.646756 CGCGGA,GCGGAU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBMY1A1 1 489 0.004106776 0.0007101099 2.531892 CAAGAC ACAAGA,CAAGAC
YBX2 4 1480 0.010266940 0.0021462711 2.258102 AACAAC,ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM8A 1 611 0.004106776 0.0008869128 2.211142 UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ERI1 1 632 0.004106776 0.0009173461 2.162468 UUCAGA UUCAGA,UUUCAG
SRSF11 1 688 0.004106776 0.0009985015 2.040170 AAGAAG AAGAAG
MATR3 1 739 0.004106776 0.0010724109 1.937149 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
CPEB4 1 821 0.004106776 0.0011912456 1.785535 UUUUUU UUUUUU
DDX19B 1 821 0.004106776 0.0011912456 1.785535 UUUUUU UUUUUU
EIF4A3 1 821 0.004106776 0.0011912456 1.785535 UUUUUU UUUUUU
IGF2BP1 1 831 0.004106776 0.0012057377 1.768090 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
CELF4 3 1782 0.008213552 0.0025839306 1.668439 GGUGUG,GGUGUU,GUGUUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RC3H1 3 1786 0.008213552 0.0025897275 1.665206 CCCUUC,CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
AGO2 3 1830 0.008213552 0.0026534924 1.630114 AAAGUG,AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
U2AF2 2 1477 0.006160164 0.0021419234 1.524062 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 2 1553 0.006160164 0.0022520629 1.451722 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZCRB1 2 1605 0.006160164 0.0023274215 1.404236 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ESRP2 3 2150 0.008213552 0.0031172377 1.397738 GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
G3BP2 2 1644 0.006160164 0.0023839405 1.369621 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM46 7 4554 0.016427105 0.0066011240 1.315295 AAUGAA,AUCAUU,AUGAAA,AUGAAU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPLL 5 3534 0.012320329 0.0051229360 1.265998 ACCGCA,CAAACA,CACACA,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
IGF2BP3 7 4815 0.016427105 0.0069793662 1.234910 AAACAC,AAAUCA,CAAACA,CACACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
NELFE 4 3028 0.010266940 0.0043896388 1.225832 CUGGCU,GGCUAA,UCUGGU,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
PABPN1 1 1222 0.004106776 0.0017723764 1.212321 AGAAGA AAAAGA,AGAAGA
LIN28A 6 4315 0.014373717 0.0062547643 1.200406 GGAGAA,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SNRNP70 1 1237 0.004106776 0.0017941145 1.194734 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF4 5 3740 0.012320329 0.0054214720 1.184284 AAGAAG,AGAAGA,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2B 10 7329 0.022587269 0.0106226650 1.088364 AAGAAC,AAGAAG,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AUAAGA,GAAGAA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
NOVA2 5 4013 0.012320329 0.0058171047 1.082668 AGGCAU,AGUCAU,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPCL1 2 2062 0.006160164 0.0029897078 1.042964 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
IGF2BP2 11 8408 0.024640657 0.0121863560 1.015774 AAACAC,AAAUCA,CAAACA,CACACA,CAUUCA,CCACAC,GAAAUC,GCACAC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
CELF5 1 1415 0.004106776 0.0020520728 1.000924 GUGUUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR2 1 29 0.09090909 0.001964894 5.531901 GGACGG AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
ZRANB2 1 45 0.09090909 0.003012837 4.915230 CGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGACGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
ERI1 4 228 0.011904762 0.0011537686 3.367113 UUCAGA,UUUCAG UUCAGA,UUUCAG
CPEB4 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
DDX19B 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
EIF4A3 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
SRP14 3 218 0.009523810 0.0011033857 3.109602 CCUGUA,CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 12 1041 0.030952381 0.0052498992 2.559689 UUUUUU AAAAAA,UUUUUU
KHDRBS2 12 1051 0.030952381 0.0053002821 2.545909 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 12 1071 0.030952381 0.0054010480 2.518739 UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 15 1381 0.038095238 0.0069629182 2.451847 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPU 12 1136 0.030952381 0.0057285369 2.433812 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 AAGGAG,AGGAGC,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
KHDRBS3 17 1646 0.042857143 0.0082980653 2.368689 AAAUAA,AUUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB2 15 1487 0.038095238 0.0074969770 2.345230 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA2 13 1434 0.033333333 0.0072299476 2.204908 AGAUCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
NOVA1 12 1428 0.030952381 0.0071997179 2.104038 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
KHDRBS1 16 1945 0.040476190 0.0098045143 2.045555 AUUUAC,CAAAAU,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 AUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 13 1711 0.033333333 0.0086255542 1.950277 CGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGCC,CUGGUA,GCUGGA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,GAUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAU,ACUUAU,CACUAA,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAA,AAUGAA,AUCAAU,AUGAAA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 UAUUUU,UGAUUU,UGGUUU,UUGAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGGUAA,UAGGUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TIAL1 28 5597 0.069047619 0.0282043531 1.291674 AAUUUU,AUUUUC,AUUUUG,AUUUUU,GUUUUU,UAUUUU,UUUAAA,UUUCAG,UUUUAA,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 UAUUUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPK 15 3244 0.038095238 0.0163492543 1.220386 CCAUCC,GCCCCU,UCCCUA,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AUUCCU,GAGCAG,GGAGAU,GUAGUG,GUUUCC,UGCACC,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
PCBP2 18 4164 0.045238095 0.0209844821 1.108215 AAAUUA,AAUUAA,ACAUUA,AUUAAA,CCCUAA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
TIA1 22 5140 0.054761905 0.0259018541 1.080117 AUUUUC,AUUUUG,AUUUUU,GUUUUU,UAUUUU,UUUUCU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGAU,GGAGGG,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAA,AGGUCU,AGGUUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
SFPQ 30 7087 0.073809524 0.0357114067 1.047422 AGAGAG,CUGGAG,GGAGGG,GUAAUU,GUAGUG,GUGGUU,UAAUGG,UAAUUU,UAGUGG,UGAUUG,UGAUUU,UGGAGG,UGGUCU,UGGUUU,UUAGUG,UUGAUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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