ENSG00000141127:+:17:18865468:18911251

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141127:+:17:18865468:18911251 ENSG00000141127 MSTRG.13816.21 + 17 18865469 18911251 861 GAGGAAUUUUGUUGUCAGAGAAUAAAAGGAGGUUGUCCAUAAUUGACUUUAAGCAGCAAUCAGUAAAACAUUGAGCUCUUCAGCUCCGCCUUUCUUGCUCUGAAAAUUGGAAAACCAAGAAGGUUUUGAUGUUUUGUGUGACGCCACCUGAAUUAGAAACCAAGAUGAACAUAACCAAAGGUGGUCUGGUGUUGUUUUCAGCAAACUCGAAUUCAUCAUGUAUGGAGCUAUCAAAGAAAAUUGCAGAGCGGCUAGGGGUGGAGAUGGGCAAAGUGCAGGUUUACCAGGAACCUAACAGAGAAACAAGAGUACAAAUUCAAGAGUCUGUGAGGGGAAAAGAUGUUUUCAUCAUCCAAACUGUUUCGAAGGACGUGAACACCACCAUCAUGGAGCUCCUGAUCAUGGUGUAUGCAUGUAAGACCUCUUGUGCCAAGAGCAUCAUUGGCGUGAUACCCUACUUUCCUUACAGCAAGCAGUGCAAGAUGAGAAAAAGAGGCUCCAUUGUCUCUAAAUUGCUGGCUUCCAUGAUGUGCAAAGCUGGUCUAACUCAUCUUAUUACUAUGGAUUUACACCAGAAGGAAAUUCAGGGCUUCUUCAAUAUUCCUGUUGACAAUUUAAGAGCAUCUCCCUUCUUAUUACAGUAUAUUCAAGAAGAGAUCCCAGAUUACAGGAAUGCAGUAAUCGUGGCCAAGUCUCCAGCCUCGGCGAAGAGGGCACAGUCUUUUGCUGAGCGCCUGCGCCUGGGAAUUGCAGUGAUUCAUGGAGAGGCGCAGGAUGCCGAGUCGGACUUGGUGGAUGGACGGCAUUCCCCACCCAUGGUCAGAAGUGUGGCUGCCAUCCACCCCAGCCUGGAGAUCCCCAGAGGAAUUUUGUUGUCAGAGAAUAAAAGGAGGUUGUCCAUAAUUGACUUU circ
ENSG00000141127:+:17:18865468:18911251 ENSG00000141127 MSTRG.13816.21 + 17 18865469 18911251 22 GGAGAUCCCCAGAGGAAUUUUG bsj
ENSG00000141127:+:17:18865468:18911251 ENSG00000141127 MSTRG.13816.21 + 17 18865269 18865478 210 CGUGUUCCACUUGAGGAAAAUGAAGAUGAGAGGUCAGUUUUAGACAUGACACAGGGCAGCUGAAAGGCCGGGAAAGGUUUUAUGGUAAACAAGGAUUACAGGAAAAGCUGGGUGUAGAUGGGUCAUUUAUUCUUUGUCUAAGGAUUAAUCAGUCCUUGUUCUCGCUAAUGGCUCUGCCAUUUUUCUGUGUGUUAAUCCAGGAGGAAUUUU ie_up
ENSG00000141127:+:17:18865468:18911251 ENSG00000141127 MSTRG.13816.21 + 17 18911242 18911451 210 GAGAUCCCCAGUAAGUGUGCUGCUGCCUCUUUCCCACUUUCCUCUGAUUUUAAGGCUGACUACACUGUUGUCUGUGUGGUUUUUUUCCUCAUUCUUCGUUUUUUUUUAGUUGGCAAAAACUCAUUAACACCUUUCUUGGCCAGAUAGUAGCGAAUGCAUUUCUGAUUACCUUGUAAAUUGUAAGGCCGUUUAGAAGCAGUCUGUCCUUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPB2 6 991 0.008130081 0.0014376103 2.499597 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
A1CF 7 1642 0.009291521 0.0023810421 1.964322 AGUAUA,AUAAUU,AUCAGU,CAGUAU,UAAUUG,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBFOX2 1 452 0.002322880 0.0006564894 1.823071 UGCAUG UGACUG,UGCAUG
HNRNPA0 1 453 0.002322880 0.0006579386 1.819890 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.003484321 0.0009985015 1.803041 AAGAAG AAGAAG
RBMY1A1 1 489 0.002322880 0.0007101099 1.709801 ACAAGA ACAAGA,CAAGAC
CSTF2 7 1967 0.009291521 0.0028520334 1.703924 GUGUUG,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
MATR3 2 739 0.003484321 0.0010724109 1.700020 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRNP70 4 1237 0.005807201 0.0017941145 1.694571 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPM 3 999 0.004645761 0.0014492040 1.680654 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SSB 4 1260 0.005807201 0.0018274462 1.668014 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM6 3 1054 0.004645761 0.0015289102 1.603411 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CELF2 6 1886 0.008130081 0.0027346479 1.571915 GUCUGU,GUUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SRP14 2 847 0.003484321 0.0012289250 1.503481 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 3 1179 0.004645761 0.0017100607 1.441867 GUCGGA,UCGGAC,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
NONO 4 1498 0.005807201 0.0021723567 1.418582 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPN1 3 1222 0.004645761 0.0017723764 1.390230 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM8A 1 611 0.002322880 0.0008869128 1.389051 UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PABPC3 3 1234 0.004645761 0.0017897669 1.376143 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ERI1 1 632 0.002322880 0.0009173461 1.340377 UUUCAG UUCAGA,UUUCAG
ZCRB1 4 1605 0.005807201 0.0023274215 1.319110 AUUUAA,GAAUUA,GAUUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBMX 13 4925 0.016260163 0.0071387787 1.187593 AAGAAG,AAGGAA,AAGUGU,ACCAAA,AGAAGG,AUCAAA,AUCCCA,AUCCCC,GAAGGA,UAAGAC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF5 3 1415 0.004645761 0.0020520728 1.178833 GUGUGG,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZNF638 4 1773 0.005807201 0.0025708878 1.175576 GGUUGU,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 4 1782 0.005807201 0.0025839306 1.168276 GGUGUU,GUGUGG,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RC3H1 4 1786 0.005807201 0.0025897275 1.165043 CCCUUC,CCUUCU,UCCCUU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBFOX1 2 1077 0.003484321 0.0015622419 1.157260 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TARDBP 6 2654 0.008130081 0.0038476365 1.079297 GUUGUU,GUUUUG,UGUGUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
YBX1 17 7119 0.020905923 0.0103183321 1.018702 ACACCA,ACCACC,AUCAUC,CACCAC,CAGCAA,CAUCAU,CCACCA,CCUGCG,GCCUGC,GGUCUG,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
CELF1 5 2391 0.006968641 0.0034664959 1.007399 GUGUUG,UGUGUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 5 2400 0.006968641 0.0034795387 1.001981 AGAAAA,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 1 11 0.09090909 0.0007859576 6.853829 AGAGGA AGAGGA,AGGAAC,GAGGAA
TRA2A 1 54 0.09090909 0.0036023055 4.657432 AGAGGA AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
G3BP1 1 69 0.09090909 0.0045847524 4.309509 CCCCAG ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 AGAGGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF7 1 128 0.09090909 0.0084490438 3.427565 AGAGGA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SFPQ 1 153 0.09090909 0.0100864553 3.172005 AGAGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 1 160 0.09090909 0.0105449306 3.107875 AGAGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF2 2 479 0.13636364 0.0314383023 2.116864 AGAGGA,CAGAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.0410007860 1.733736 AGAGGA,CAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
NONO 3 364 0.009523810 0.0018389762 2.372636 GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CPEB4 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
DDX19B 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
EIF4A3 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
U2AF2 9 1071 0.023809524 0.0054010480 2.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RALY 8 1117 0.021428571 0.0056328094 1.927609 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
CELF2 6 881 0.016666667 0.0044437727 1.907109 GUCUGU,GUGUGU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RC3H1 4 631 0.011904762 0.0031841999 1.902536 CCUUCU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF4 5 776 0.014285714 0.0039147521 1.867580 GUGUGG,GUGUGU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AACACC,UCAGUC,UCAUUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBM24 5 888 0.014285714 0.0044790407 1.673311 AGUGUG,GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SYNCRIP 6 1041 0.016666667 0.0052498992 1.666604 UUUUUU AAAAAA,UUUUUU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,GUAGAU,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AACACC,AGACAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGGAGG,AGUAAG,AGUUGG,UAGUAG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPU 6 1136 0.016666667 0.0057285369 1.540727 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM4 5 1094 0.014285714 0.0055169287 1.372636 CCUCUU,CCUUCU,CUCUUU,UCCUUC,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SF1 6 1294 0.016666667 0.0065245869 1.353007 AGUAAG,AUUAAC,GCUGAC,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SRSF4 2 558 0.007142857 0.0028164047 1.342647 GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,AUUUUA,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGUGG,UGUGGU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,UGUGUG,UGUGUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
FUS 7 1711 0.019047619 0.0086255542 1.142922 GGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUCAU,AUUAAC,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FMR1 22 5430 0.054761905 0.0273629585 1.000948 AAGGAU,AGCGAA,AGCUGG,AGGAAU,AGGAGG,AGGAUU,CAGCUG,CUAAGG,GCAGCU,GCUGGG,GGCUGA,UAAGGA,UAGCGA,UGAGGA,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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