circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000106771:-:9:109064476:109080943
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000106771:-:9:109064476:109080943 | ENSG00000106771 | ENST00000374586 | - | 9 | 109064477 | 109080943 | 279 | AUGAUCAUCUGGUUGGAGAAGAUGUUAGAUAAAAUAAUUAGCAUUUUCAUCAUAUUUUUGUUAGUGAUAGGAACUCUUCUUUUAGCCCUACUCCUGACUGCAAAGGUACAUCAAGAGAGUGUACACAUGAUUGAAGUCACAAGUAAUUUGAUUAAUGAAACUCUAGCAAAUCACCCUGAGUGGGCAAAUUGGCUUCCUGAGGCUCAGGUAGUCCAAAGAGCCCUGAAUUCUGCGGCUAACAACGUGUAUCAGUAUGGACGAGAAUGGAUAACUCACAAGAUGAUCAUCUGGUUGGAGAAGAUGUUAGAUAAAAUAAUUAGCAUUUUCAU | circ |
| ENSG00000106771:-:9:109064476:109080943 | ENSG00000106771 | ENST00000374586 | - | 9 | 109064477 | 109080943 | 22 | UAACUCACAAGAUGAUCAUCUG | bsj |
| ENSG00000106771:-:9:109064476:109080943 | ENSG00000106771 | ENST00000374586 | - | 9 | 109080934 | 109081143 | 210 | AGUAAUAAACUAUAUAACAACAGCAGUAAUGAGUACUGUGAAGUUUUUAAAGUUGCUUAAAGCUUUUAUUGCUUUAAUUAUUAUGCCAUAAUUUGCUUUGCCAUGCUGGAGAUCCUGUUUUGUCUUUAUGACAAUUGAGUAUAUGUAUUUUUAAAGUUCUACUUUAAAGAUAAGUAAUUCUCUUUUUCGUUUUUGUGCAGAUGAUCAUCU | ie_up |
| ENSG00000106771:-:9:109064476:109080943 | ENSG00000106771 | ENST00000374586 | - | 9 | 109064277 | 109064486 | 210 | AACUCACAAGGUAAGGGAAGAAACUUUCUUUGUGGCUUUCUCUUUUCAGGGUCUUUACUGGUGGUUGCUUGUUGCUUUGAUAAAACAUAAGUAGAAAUGCUAUUCACAGCAGUAAAUAGGCUUAAAUAAACAGGUAAGCAACAUACAAUGAAAUCUUUUGAAAGAUCACAUUGAAUAGGGGUAGUACCCUGAACAAUCUGAGAGGUUGGU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| AGO1 | 2 | 548 | 0.010752688 | 0.0007956130 | 3.756487 | AGGUAG,GGUAGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBFOX2 | 1 | 452 | 0.007168459 | 0.0006564894 | 3.448819 | UGACUG | UGACUG,UGCAUG |
| A1CF | 6 | 1642 | 0.025089606 | 0.0023810421 | 3.397425 | AUAAUU,AUCAGU,CAGUAU,UAAUUA,UCAGUA,UGAUCA | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| RBMY1A1 | 1 | 489 | 0.007168459 | 0.0007101099 | 3.335549 | ACAAGA | ACAAGA,CAAGAC |
| YBX2 | 3 | 1480 | 0.014336918 | 0.0021462711 | 2.739831 | AACAAC,ACAACG,ACAUCA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| PUM2 | 4 | 1890 | 0.017921147 | 0.0027404447 | 2.709181 | GUACAU,UACAUC,UAGAUA,UGUACA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| RBM24 | 4 | 2357 | 0.017921147 | 0.0034172229 | 2.390767 | AGAGUG,GAGUGG,GAGUGU,UGAGUG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| RBFOX1 | 1 | 1077 | 0.007168459 | 0.0015622419 | 2.198045 | UGACUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| QKI | 4 | 2805 | 0.017921147 | 0.0040664663 | 2.139815 | AUCAUA,CUAACA,CUACUC,UCAUAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| RBM46 | 7 | 4554 | 0.028673835 | 0.0066011240 | 2.118951 | AAUGAA,AUCAAG,AUCAUA,AUGAAA,AUGAUU,GAUCAU,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| EIF4B | 1 | 1179 | 0.007168459 | 0.0017100607 | 2.067615 | GUUGGA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| NELFE | 4 | 3028 | 0.017921147 | 0.0043896388 | 2.029489 | CUGGUU,GCUAAC,GGCUAA,UCUGGU | CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA |
| PABPN1 | 1 | 1222 | 0.007168459 | 0.0017723764 | 2.015978 | AGAAGA | AAAAGA,AGAAGA |
| SNRNP70 | 1 | 1237 | 0.007168459 | 0.0017941145 | 1.998391 | AUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| KHDRBS2 | 2 | 1858 | 0.010752688 | 0.0026940701 | 1.996838 | AUAAAA,GAUAAA | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| KHDRBS3 | 4 | 3429 | 0.017921147 | 0.0049707696 | 1.850122 | AAAUAA,AGAUAA,AUAAAA,GAUAAA | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| HNRNPCL1 | 2 | 2062 | 0.010752688 | 0.0029897078 | 1.846621 | AUUUUU,UUUUUG | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| NONO | 1 | 1498 | 0.007168459 | 0.0021723567 | 1.722402 | AGGAAC | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| CPEB2 | 2 | 2261 | 0.010752688 | 0.0032780993 | 1.713766 | AUUUUU,CAUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| RALY | 1 | 1553 | 0.007168459 | 0.0022520629 | 1.670416 | UUUUUG | UUUUUC,UUUUUG,UUUUUU |
| ZRANB2 | 3 | 3173 | 0.014336918 | 0.0045997733 | 1.640100 | AAAGGU,AGGUAC,AGGUAG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| ZCRB1 | 1 | 1605 | 0.007168459 | 0.0023274215 | 1.622930 | GAUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| G3BP2 | 1 | 1644 | 0.007168459 | 0.0023839405 | 1.588315 | GGAUAA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| PUM1 | 6 | 5823 | 0.025089606 | 0.0084401638 | 1.571747 | AGAUAA,GUACAU,UACAUC,UAGAUA,UGUACA,UUAAUG | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| ZNF638 | 1 | 1773 | 0.007168459 | 0.0025708878 | 1.479396 | GGUUGG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| HNRNPAB | 1 | 1782 | 0.007168459 | 0.0025839306 | 1.472096 | CAAAGA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| MSI1 | 2 | 2770 | 0.010752688 | 0.0040157442 | 1.420958 | AGGUAG,UAGGAA | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| NOVA1 | 3 | 3872 | 0.014336918 | 0.0056127669 | 1.352951 | AGUCAC,AUCACC,AUCAUC | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| RBM4 | 2 | 3065 | 0.010752688 | 0.0044432593 | 1.275007 | CUUCCU,CUUCUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| RBM3 | 1 | 2152 | 0.007168459 | 0.0031201361 | 1.200054 | GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| ELAVL1 | 4 | 5554 | 0.017921147 | 0.0080503280 | 1.154544 | UAUUUU,UUGAUU,UUUGUU,UUUUUG | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| FXR2 | 2 | 3434 | 0.010752688 | 0.0049780156 | 1.111055 | GACGAG,GGACGA | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| ELAVL2 | 15 | 18468 | 0.057347670 | 0.0267653478 | 1.099368 | AAUUUG,AUAUUU,AUUUUC,AUUUUU,CAUUUU,CUUUUA,UAAUUU,UAUUUU,UCUUUU,UUCUUU,UUGAUU,UUUCAU,UUUGAU,UUUUAG,UUUUUG | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPC | 2 | 3471 | 0.010752688 | 0.0050316361 | 1.095598 | AUUUUU,UUUUUG | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| YBX1 | 5 | 7119 | 0.021505376 | 0.0103183321 | 1.059488 | ACAUCA,AUCAUC,CAUCAU,CAUCUG,CUGCGG | AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU |
| IGF2BP2 | 6 | 8408 | 0.025089606 | 0.0121863560 | 1.041823 | AAACUC,AAAUCA,AACUCA,CAAAUC,GAACUC,GAAUUC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| IGF2BP3 | 3 | 4815 | 0.014336918 | 0.0069793662 | 1.038567 | AAACUC,AAAUCA,AACUCA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| SF1 | 3 | 4931 | 0.014336918 | 0.0071474739 | 1.004230 | CUAACA,GCUAAC,UAACAA | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBMY1A1 | 1 | 7 | 0.09090909 | 0.0005239717 | 7.438792 | ACAAGA | ACAAGA,CAAGAC |
| RBM46 | 1 | 14 | 0.09090909 | 0.0009824469 | 6.531901 | GAUGAU | AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU |
| SRSF2 | 1 | 479 | 0.09090909 | 0.0314383023 | 1.531901 | GAUGAU | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 1 | 625 | 0.09090909 | 0.0410007860 | 1.148773 | GAUGAU | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| FXR1 | 1 | 69 | 0.004761905 | 0.0003526804 | 3.755106 | AUGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| YBX2 | 2 | 263 | 0.007142857 | 0.0013301088 | 2.424957 | AACAAC,ACAACA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | AUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| AGO1 | 2 | 283 | 0.007142857 | 0.0014308746 | 2.319604 | GGUAGU,GUAGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| A1CF | 5 | 598 | 0.014285714 | 0.0030179363 | 2.242939 | AGUAUA,AUAAUU,UAAUUA,UGAUCA,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| MATR3 | 1 | 216 | 0.004761905 | 0.0010933091 | 2.122837 | AAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| RBMS1 | 1 | 217 | 0.004761905 | 0.0010983474 | 2.116204 | UAUAUA | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| AKAP1 | 1 | 221 | 0.004761905 | 0.0011185006 | 2.089973 | UAUAUA | AUAUAU,UAUAUA |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUUCAG | UUCAGA,UUUCAG |
| PUM2 | 5 | 764 | 0.014285714 | 0.0038542926 | 1.890035 | GUAAAU,GUAUAU,UAAAUA,UAUAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| KHDRBS3 | 11 | 1646 | 0.028571429 | 0.0082980653 | 1.783726 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,GAUAAA,UAAAAC,UAAAUA | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SNRPB2 | 1 | 288 | 0.004761905 | 0.0014560661 | 1.709463 | UAUUGC | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| KHDRBS2 | 6 | 1051 | 0.016666667 | 0.0053002821 | 1.652825 | AAUAAA,AUAAAA,AUAAAC,GAUAAA | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| PABPC3 | 1 | 310 | 0.004761905 | 0.0015669085 | 1.603618 | AAAACA | AAAAAC,AAAACA,AAAACC,GAAAAC |
| ZCRB1 | 3 | 666 | 0.009523810 | 0.0033605401 | 1.502846 | GCUUAA,GGCUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| SSB | 2 | 505 | 0.007142857 | 0.0025493753 | 1.486358 | CUGUUU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | AGUAGA | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| HNRNPL | 7 | 1419 | 0.019047619 | 0.0071543732 | 1.412713 | AAAUAA,AAUAAA,ACAUAA,ACAUAC,CACAAG,CAUACA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AAACUA,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| SRSF4 | 2 | 558 | 0.007142857 | 0.0028164047 | 1.342647 | GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBMS3 | 2 | 562 | 0.007142857 | 0.0028365578 | 1.332360 | CUAUAU,UAUAUA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| ZRANB2 | 6 | 1360 | 0.016666667 | 0.0068571141 | 1.281292 | AGGGAA,AGGUAA,GAGGUU,GGUGGU,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| MBNL1 | 15 | 3258 | 0.038095238 | 0.0164197904 | 1.214175 | AUGCCA,GCUUGU,GCUUUU,GGCUUU,UGCUUU,UUGCCA,UUGCUU,UUGUGC,UUUGCU | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| ZNF638 | 2 | 646 | 0.007142857 | 0.0032597743 | 1.131729 | GGUUGG,GUUGGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| PUM1 | 9 | 2172 | 0.023809524 | 0.0109482064 | 1.120844 | ACAUAA,AGAUAA,GUAAAU,GUAAUA,GUAUAU,UAAAUA,UAUAUA,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| RBM46 | 4 | 1091 | 0.011904762 | 0.0055018138 | 1.113560 | AAUGAA,AUGAAA,GAUCAU,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| IGF2BP3 | 5 | 1348 | 0.014285714 | 0.0067966546 | 1.071676 | AAAACA,AACUCA,ACAAUC,ACAUAC,CAUACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| SRSF5 | 6 | 1578 | 0.016666667 | 0.0079554615 | 1.066948 | AACAGC,CAACAG,CACAGC,GAAGAA,GGAAGA,UGCAGA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| AGO2 | 2 | 677 | 0.007142857 | 0.0034159613 | 1.064210 | UAAAGU | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| TIAL1 | 23 | 5597 | 0.057142857 | 0.0282043531 | 1.018655 | AGUUUU,AUUUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAAAU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.