ENSG00000170681_ENSG00000251349:+:9:100498764:100516771

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000170681_ENSG00000251349:+:9:100498764:100516771 ENSG00000170681_ENSG00000251349 MSTRG.33150.11 + 9 100498765 100516771 364 AAUUAAAUGUGAGGGAGUCUGACGUAAGAGUUUGUGAUGAGUCAUCAUGUAAAUAUGGAGGAGUCUGUAAAGAAGAUGGAGAUGGUUUGAAAUGUGCAUGCCAAUUUCAGUGCCAUACAAAUUAUAUUCCUGUCUGUGGAUCAAAUGGGGACACUUAUCAAAAUGAAUGCUUUCUCAGAAGGGCUGCUUGUAAGCACCAGAAAGAGAUAACAGUAAUAGCAAGAGGACCAUGCUACUCUGAUAAUGGAUCUGGAUCUGGAGAAGGAGAAGAGGAAGGGUCAGGGGCAGAAGUUCACAGAAAACACUCCAAGUGUGGACCCUGCAAAUAUAAAGCUGAGUGUGAUGAAGAUGCAGAAAAUGUUGGAAUUAAAUGUGAGGGAGUCUGACGUAAGAGUUUGUGAUGAGUCAUCAUGU circ
ENSG00000170681_ENSG00000251349:+:9:100498764:100516771 ENSG00000170681_ENSG00000251349 MSTRG.33150.11 + 9 100498765 100516771 22 GAAAAUGUUGGAAUUAAAUGUG bsj
ENSG00000170681_ENSG00000251349:+:9:100498764:100516771 ENSG00000170681_ENSG00000251349 MSTRG.33150.11 + 9 100498565 100498774 210 UGCAGGAUUCUGUUUGGGGAAUACUGAGCAUUUUGUGUCUUACAGAAUUUCUUUUUGUAUAGUUAUGUCUUAUUACACUUCUGAAUGGGGGGGCUCAAUACAUUUUAAGGACUUUUUCAUACACACACACACACGCGCACAGACACACACACGUAAUAAAAAGCCAAAUAUAUAUGUCAAACAAUUUUUUUCUUUUGCAGAAUUAAAUGU ie_up
ENSG00000170681_ENSG00000251349:+:9:100498764:100516771 ENSG00000170681_ENSG00000251349 MSTRG.33150.11 + 9 100516762 100516971 210 AAAAUGUUGGGUGAGUUGGUUGAGGGGAAGGGACAAAGUUAUUUAGAGAUUAAUCAUCAGUAUGAUUAUAUUGUGGAAAGGUAUCAUUUACCUGGUUCUGUAUCUUUUGUGUGUUUUCAAAUUUUUUUUUUGUUUAAUGCUAGUCUAUUGACUUUUAAAUUGAUAUAAUACUAUGGCUAUUUAAAUCAGUUUAAGUGUUAUAAUUUUAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 339 0.005494505 0.0004927293 3.479122 GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBFOX2 1 452 0.005494505 0.0006564894 3.065146 UGCAUG UGACUG,UGCAUG
IGF2BP1 2 831 0.008241758 0.0012057377 2.773036 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ERI1 1 632 0.005494505 0.0009173461 2.582452 UUUCAG UUCAGA,UUUCAG
RBM24 6 2357 0.019230769 0.0034172229 2.492520 AGUGUG,GAGUGU,GUGUGA,GUGUGG,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SRSF11 1 688 0.005494505 0.0009985015 2.460153 AAGAAG AAGAAG
RBFOX1 2 1077 0.008241758 0.0015622419 2.399334 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CELF6 7 2997 0.021978022 0.0043447134 2.338729 GUGAGG,GUGAUG,GUGUGG,UGUGAG,UGUGAU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
NONO 3 1498 0.010989011 0.0021723567 2.338729 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PUM2 4 1890 0.013736264 0.0027404447 2.325508 GUAAAU,UAAAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
EIF4B 2 1179 0.008241758 0.0017100607 2.268905 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 2 1222 0.008241758 0.0017723764 2.217267 AGAAGA AAAAGA,AGAAGA
PABPC3 2 1234 0.008241758 0.0017897669 2.203180 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
LIN28A 9 4315 0.027472527 0.0062547643 2.134962 AGGAGA,AGGAGU,GGAGAA,GGAGAU,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBMX 10 4925 0.030219780 0.0071387787 2.081744 AAGAAG,AAGUGU,AGAAGG,AGGAAG,AUCAAA,GAAGGA,GGAAGG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF1 4 2391 0.013736264 0.0034664959 1.986440 CUGUCU,GUUUGU,UGUCUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 4 2400 0.013736264 0.0034795387 1.981022 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 13 6871 0.038461538 0.0099589296 1.949354 AAAGAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPM 1 999 0.005494505 0.0014492040 1.922729 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM46 8 4554 0.024725275 0.0066011240 1.905203 AAUGAA,AUCAAA,AUCAUG,AUGAAG,AUGAAU,GAUCAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 1605 0.008241758 0.0023274215 1.824220 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM1 9 5823 0.027472527 0.0084401638 1.702647 AAUGUU,AGAUAA,CCAGAA,CUUGUA,GUAAAU,GUAAUA,UAAAUA,UGUAAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TRA2B 11 7329 0.032967033 0.0106226650 1.633878 AAAGAA,AAGAAG,AGAAGA,AGAAGG,AGGAAG,GAAAGA,GAAGGA,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SNRNP70 1 1237 0.005494505 0.0017941145 1.614718 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF4 5 3740 0.016483516 0.0054214720 1.604268 AAGAAG,AGAAGA,AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF2 2 1886 0.008241758 0.0027346479 1.591597 GUCUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ACO1 1 1283 0.005494505 0.0018607779 1.562084 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 1 1283 0.005494505 0.0018607779 1.562084 AAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SART3 3 2634 0.010989011 0.0038186524 1.524926 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS3 4 3429 0.013736264 0.0049707696 1.466449 AGAUAA,AUAAAG,AUUAAA,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CELF5 1 1415 0.005494505 0.0020520728 1.420908 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC1 5 4443 0.016483516 0.0064402624 1.355833 ACAAAU,AGAAAA,CAAAUA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF10 15 13860 0.043956044 0.0200874160 1.129770 AAAGAA,AAAGAG,AAGAAG,AAGAGA,AAGAGG,AAGGAG,AGAGGA,GAAAGA,GAGAAG,GAGGAA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
ZNF638 1 1773 0.005494505 0.0025708878 1.095723 UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 1 1782 0.005494505 0.0025839306 1.088422 GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 1 1782 0.005494505 0.0025839306 1.088422 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RC3H1 1 1786 0.005494505 0.0025897275 1.085189 UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
QKI 2 2805 0.008241758 0.0040664663 1.019176 ACUUAU,CUACUC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 2 5 0.13636364 0.0003929788 8.438792 GUUGGA,UUGGAA CUUGGA,UCGGAA,UUGGAA,UUGGAC
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GAAUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
TRA2B 1 51 0.09090909 0.0034058161 4.738352 GAAUUA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 1 84 0.004761905 0.0004282547 3.474998 ACGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
HNRNPLL 16 748 0.040476190 0.0037736800 3.423030 ACACAC,CAAACA,CACACA,CAUACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
IGF2BP3 18 1348 0.045238095 0.0067966546 2.734641 AAAUCA,AAUACA,ACACAC,CAAACA,CACACA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBMS1 2 217 0.007142857 0.0010983474 2.701167 GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GGGGGG AAGGAA,GAAGGA,GGGGGG
HNRNPL 18 1419 0.045238095 0.0071543732 2.660641 AAACAA,AAUAAA,AAUACA,ACACAC,CACACA,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
QKI 10 904 0.026190476 0.0045596534 2.522046 AAUCAU,ACACAC,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CPEB4 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
RALY 11 1117 0.028571429 0.0056328094 2.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZCRB1 6 666 0.016666667 0.0033605401 2.310201 AAUUAA,AUUUAA,GAAUUA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPCL1 13 1381 0.033333333 0.0069629182 2.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
A1CF 5 598 0.014285714 0.0030179363 2.242939 AUAAUU,AUCAGU,CAGUAU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP2 20 2163 0.050000000 0.0109028617 2.197221 AAAUCA,AAUACA,ACACAC,CAAACA,CAAUAC,CACACA,CAUACA,GAAUAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
KHDRBS2 9 1051 0.023809524 0.0053002821 2.167398 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPC 18 2006 0.045238095 0.0101118501 2.161491 AUUUUU,CUUUUU,GGAUUC,GGGGGG,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
U2AF2 9 1071 0.023809524 0.0054010480 2.140228 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPU 9 1136 0.023809524 0.0057285369 2.055300 GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ESRP2 5 731 0.014285714 0.0036880290 1.953651 GGGAAG,GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 AUAAAA,AUUUAA,AUUUAC,UAAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
NOVA1 10 1428 0.026190476 0.0071997179 1.863030 AUCAUC,GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 UUUUUU AAAAAA,UUUUUU
NOVA2 10 1434 0.026190476 0.0072299476 1.856985 AUCAUC,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAUACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TIAL1 39 5597 0.095238095 0.0282043531 1.755621 AAAUUU,AAUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUC,UAAAUU,UCAGUU,UUAAAU,UUAUUU,UUUAAA,UUUUAA,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUGU,GUGUUU,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUUA,UAUUUA,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAUAAA,AUAAAA,AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUGU,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
FUS 10 1711 0.026190476 0.0086255542 1.602353 GGGGGG,GGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUCU,GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ELAVL2 57 9826 0.138095238 0.0495112858 1.479834 AAUUUU,AUUUAA,AUUUAC,AUUUAG,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUUA,CUUUUU,GUUUUC,UAAUUU,UAGUUA,UAUAUA,UAUAUU,UAUUGA,UAUUGU,UAUUUA,UCAUUU,UCUUAU,UCUUUU,UUAAGU,UUAUAU,UUAUGU,UUAUUU,UUCUUU,UUGUAU,UUUAAG,UUUAAU,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGG,GUGUGU,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PPIE 51 9262 0.123809524 0.0466696896 1.407565 AAAUAU,AAAUUU,AAUAAA,AAUAUA,AAUUAA,AAUUUU,AUAAAA,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUUA,AUUUUU,UAAAAA,UAAAUU,UAAUAA,UAAUUU,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UUAAAU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AAGGGA,AGGGGA,GAAGGG,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGGCU,GGGGGC,GGGGGG,UGGGUG,UUGGGU AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 16 3198 0.040476190 0.0161174929 1.328446 AAGGGA,AGGGGA,GAAGGG,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGGAA,GGGGCU,GGGGGC,GGGGGG,UGGGGG,UGGGUG,UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAUACA,CAGACA,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
TIA1 26 5140 0.064285714 0.0259018541 1.311443 AUUUUG,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUC,UUAUUU,UUUUCU,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 GUAUCU,UAUUUA,UGUAUC,UUAUUU,UUGUAU,UUUGUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAUUUA,UGUUUU,UUAUUU,UUGGUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUGUU,AGAAUU,CAGAAU,GUAAUA,UAUAUA,UGUAUA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 AAGGGA,AGGGGA,GAAGGG,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGGAA,GGGGCU,GGGGGC,GGGGGG,UGGGGG,UGGGUG,UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AGUAUG,AGUUUA,GGGGGG,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPF 14 3360 0.035714286 0.0169336961 1.076604 AAGGGA,AGGGGA,AUGGGG,GAAGGG,GAGGGG,GGAAGG,GGGAAG,GGGAAU,GGGGAA,GGGGCU,GGGGGC,GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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