ENSG00000156232:+:15:82813102:82826846

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000156232:+:15:82813102:82826846 ENSG00000156232 MSTRG.11397.3 + 15 82813103 82826846 1161 GUUAUUCAAGGACACGGAAAAGCCAACACCAUGGUAGCAUUAAUGAACGUUUACCAAGAGGAAGAUGAAGCAUACCAGGAAUUGGUUACCGUGGCAACCAUGUUCUUCCAGUACUUAUUGCAGCCAUUUAGGGCUAUGCGAGAAGUUGCAACUUUAUGUAAGCUUGAUAUUUUGAAGUCUUUGGAUGAGGAUGACCUAGGUCCUAGAAGGGUAGUUGCCCUGGAGAAAGAAGCUGAAGAAUGGACCAGACGGGCUGAAGAAGCUGUCGUCUCUAUUCAGGAUAUCACAGUGAAUUAUUUUAAGGAGACAGUAAAAGCAUUAGCAGGAAUGCAGAAAGAAAUGGAACAGGAUGCGAAGAGAUUUGGUCAGGCUGCCUGGGCCACAGCAAUUCCCAGGUUGGAAAAACUUCAGCUAAUGCUAGCUCGAGAGACUCUGCAACUCAUGAGAGCGAAAGAGUUGUGUUUAAAUCACAAAAGAGCUGAAAUUCAGGGAAAGAUGGAAGAUCUUCCAGAACAAGAAAAAAAUACAAAUGUUGUAGAUGAAUUAGAAAUACAAUUUUAUGAAAUUCAAUUAGAACUAUAUGAAGUUAAAUUUGAGAUAUUAAAAAACGAAGAAAUACUGCUUACUACACAGUUGGACUCUCUUAAAAGACUUAUAAAAGAUGAAAUUUAGAAUCAAGUUCAAAACAAAAACUCGUUGGAAUUUUGAUUGUGAUUUUGCUUAAAAUUAGAGAUUACUUUGGGGAGAAUAGUGGUCUUUGCAAUUUUGAAUCUUCCUACCCAAGAACAUGAAAAACAAGAUGAAGUUGUCUAUUACGAUCCAUGUGAAAAUCCAGAGGAACUUAAAGUCAUUGACUGUGUGGUGGGGCUGCAGGAUGAUAAGAAUUUGGAAGUGAAAGAACUCAGAAGGCAGUGCCAGCAGCUGGAGUCUAAACGGGGCAGGAUCUGUGCCAAAAGAGCCUCUCUCCGGAGUAGAAAGGAUCAGUGCAAAGAAAAUCAUCGGUUCAGAUUGCAACAGGCUGAAGAAAGCAUAAGAUACUCUCGUCAGCAUCACAGUAUUCAGAUGAAAAGAGACAAGAUAAAAGAAGAGGAGCAAAAGAAAAAAGAAUGGAUCAACCAAGAACGUCAAAAAACACUCCAACGAUUGAGAUCAUUUAAAGAUGUUAUUCAAGGACACGGAAAAGCCAACACCAUGGUAGCAUUAAUGAACGU circ
ENSG00000156232:+:15:82813102:82826846 ENSG00000156232 MSTRG.11397.3 + 15 82813103 82826846 22 CAUUUAAAGAUGUUAUUCAAGG bsj
ENSG00000156232:+:15:82813102:82826846 ENSG00000156232 MSTRG.11397.3 + 15 82812903 82813112 210 AUAUAUCAUACUUUUCUUAACCAUUCUUGUUUUAUUGGGCAUUUUUGAUGGAGGAUGAUAACAUUUUCAUAUUUAAUCAGUAUUUAAAAUUGAUGUAUUAAAAGUUGAGAACAUGAAGGUUUCUUUUGUUUAGUUUUGUUUGUUGGGUAUGUAUUAAAUAUACUGUCCUGACUUGAGCUUUAUUCACAUUUGCUUUCUAGGUUAUUCAAG ie_up
ENSG00000156232:+:15:82813102:82826846 ENSG00000156232 MSTRG.11397.3 + 15 82826837 82827046 210 AUUUAAAGAUGUAAGUUCUAUAAACAAUCACCUCAUCUACACUUCUGGGGAAAUAACUGAAGACCACCCUAAAAAAGAUGAAAGUAUGAAGUAUUAAGAACAGGUCAUUCAGAACGUGAAACAUUUAAAAAAUACCAUUAUUUCUGGUAUAUCAAUAAAAAACAACAAAAAUAGAAUAUCAGUGAUUCAAAACCCAUGAUACAAAAUAAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001722653 0.0001130379 3.929753 GCAUAA GCAUAA
PTBP2 2 267 0.002583979 0.0003883867 2.734029 CUCUCU CUCUCU
TUT1 6 678 0.006029285 0.0009840095 2.615243 AAAUAC,AAUACU,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPN1 9 1222 0.008613264 0.0017723764 2.280875 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMY1A1 3 489 0.003445306 0.0007101099 2.278518 ACAAGA ACAAGA,CAAGAC
IGHMBP2 5 813 0.005167959 0.0011796520 2.131233 AAAAAA AAAAAA
PABPC3 8 1234 0.007751938 0.0017897669 2.114785 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 17 2634 0.015503876 0.0038186524 2.021493 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
EIF4B 7 1179 0.006890612 0.0017100607 2.010585 GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC5 15 2400 0.013781223 0.0034795387 1.985736 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPA0 2 453 0.002583979 0.0006579386 1.973570 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
SNRNP70 7 1237 0.006890612 0.0017941145 1.941360 AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA1L2 1 314 0.001722653 0.0004564992 1.915948 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
TRA2A 40 6871 0.035314384 0.0099589296 1.826193 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF11 3 688 0.003445306 0.0009985015 1.786795 AAGAAG AAGAAG
IGF2BP3 26 4815 0.023255814 0.0069793662 1.736423 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,AAUACA,AAUUCA,ACACUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PABPC4 6 1251 0.006029285 0.0018144033 1.732492 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM46 22 4554 0.019810508 0.0066011240 1.585482 AAUCAA,AAUCAU,AAUGAA,AUCAAG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,GAUCAA,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SNRPB2 4 991 0.004306632 0.0014376103 1.582887 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZCRB1 7 1605 0.006890612 0.0023274215 1.565899 ACUUAA,AUUUAA,GAAUUA,GACUUA,GCUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 7 1644 0.006890612 0.0023839405 1.531284 AGGAUA,AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 3 822 0.003445306 0.0011926949 1.530407 AGUAGA,GAGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TRA2B 34 7329 0.030146425 0.0106226650 1.504841 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AGAAGA,AGAAGG,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ERI1 2 632 0.002583979 0.0009173461 1.494056 UUCAGA UUCAGA,UUUCAG
NONO 6 1498 0.006029285 0.0021723567 1.472726 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBFOX2 1 452 0.001722653 0.0006564894 1.391788 UGACUG UGACUG,UGCAUG
PABPC1 18 4443 0.016365202 0.0064402624 1.345440 AAAAAA,AAAAAC,ACAAAU,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM3 8 2152 0.007751938 0.0031201361 1.312948 AAAACG,AAAACU,AAACGA,AAGACU,AAUACU,GAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF10 56 13860 0.049095607 0.0200874160 1.289302 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAG,AGACAA,AGAGAC,AGAGGA,CAAAGA,GAAAGA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGAGC,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
IGF2BP2 32 8408 0.028423773 0.0121863560 1.221831 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,AAUACA,AAUUCA,ACACUC,CAAAAC,CAACAC,CAACUC,CAAUUC,GAACUC,GCAUAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
HNRNPD 10 2837 0.009474591 0.0041128408 1.203928 AAAAAA,AAUUUA,AGAUAU,UUAGAG,UUAGGG,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
AGO2 6 1830 0.006029285 0.0026534924 1.184095 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 13 3740 0.012058570 0.0054214720 1.153302 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SYNCRIP 5 1634 0.005167959 0.0023694485 1.125043 AAAAAA AAAAAA,UUUUUU
AGO1 1 548 0.001722653 0.0007956130 1.114493 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF5 4 1415 0.004306632 0.0020520728 1.069478 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
KHDRBS1 13 4064 0.012058570 0.0058910141 1.033471 AUAAAA,AUUUAA,UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ZNF638 5 1773 0.005167959 0.0025708878 1.007328 CGUUGG,GGUUGG,GUUCUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRNP70 3 253 0.009523810 0.0012797259 2.895704 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
PABPC4 4 462 0.011904762 0.0023327287 2.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM46 9 1091 0.023809524 0.0055018138 2.113560 AUCAAU,AUCAUA,AUGAAA,AUGAAG,AUGAUA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUCAGU,CAGUAU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
KHDRBS1 15 1945 0.038095238 0.0098045143 1.958093 AUAAAA,AUUUAA,CAAAAU,CUAAAA,UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAAAAA,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAACAA,AAAUAA,AAAUAC,AACAAA,AAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
QKI 4 904 0.011904762 0.0045596534 1.384543 AUCAUA,AUCUAC,UAAUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAAUAA,AAUAAA,AUAAAA,AUAAAC,AUUAAA,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PPIE 48 9262 0.116666667 0.0466696896 1.321835 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAUAAA,AAUAUA,AUAAAA,AUAUAU,AUAUUU,AUUAAA,AUUAUU,AUUUAA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAUAAA,UAUUAA,UAUUUA,UUAAAA,UUAAAU,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,AAAACA,AAAUAC,ACAAUC,CAAUCA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAGUUU,UAUUUA,UGUUUU,UUAGUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZFP36 41 9408 0.100000000 0.0474052801 1.076880 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGU,AAAAUA,AAACAA,AAAGUA,AAAUAA,AACAAA,AAUAAA,ACUUCU,ACUUUU,AUAAAC,AUUUAA,UAAACA,UAAAGA,UAAAUA,UAUUUA,UCUUGU,UCUUUU,UUAUUU,UUUAAA,UUUAAU,UUUAUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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