ENSG00000149311:+:11:108315822:108335961

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000149311:+:11:108315822:108335961 ENSG00000149311 ENST00000683174 + 11 108315823 108335961 2262 GAUCUUCUCUUAGAAAUCUACAGAAGUAUAGGGGAGCCAGAUAGUUUGUAUGGCUGUGGUGGAGGGAAGAUGUUACAACCCAUUACUAGACUACGAACAUAUGAACACGAAGCAAUGUGGGGCAAAGCCCUAGUAACAUAUGACCUCGAAACAGCAAUCCCCUCAUCAACACGCCAGGCAGGAAUCAUUCAGGCCUUGCAGAAUUUGGGACUCUGCCAUAUUCUUUCCGUCUAUUUAAAAGGAUUGGAUUAUGAAAAUAAAGACUGGUGUCCUGAACUAGAAGAACUUCAUUACCAAGCAGCAUGGAGGAAUAUGCAGUGGGACCAUUGCACUUCCGUCAGCAAAGAAGUAGAAGGAACCAGUUACCAUGAAUCAUUGUACAAUGCUCUACAAUCUCUAAGAGACAGAGAAUUCUCUACAUUUUAUGAAAGUCUCAAAUAUGCCAGAGUAAAAGAAGUGGAAGAGAUGUGUAAGCGCAGCCUUGAGUCUGUGUAUUCGCUCUAUCCCACACUUAGCAGGUUGCAGGCCAUUGGAGAGCUGGAAAGCAUUGGGGAGCUUUUCUCAAGAUCAGUCACACAUAGACAACUCUCUGAAGUAUAUAUUAAGUGGCAGAAACACUCCCAGCUUCUCAAGGACAGUGAUUUUAGUUUUCAGGAGCCUAUCAUGGCUCUACGCACAGUCAUUUUGGAGAUCCUGAUGGAAAAGGAAAUGGACAACUCACAAAGAGAAUGUAUUAAGGACAUUCUCACCAAACACCUUGUAGAACUCUCUAUACUGGCCAGAACUUUCAAGAACACUCAGCUCCCUGAAAGGGCAAUAUUUCAAAUUAAACAGUACAAUUCAGUUAGCUGUGGAGUCUCUGAGUGGCAGCUGGAAGAAGCACAAGUAUUCUGGGCAAAAAAGGAGCAGAGUCUUGCCCUGAGUAUUCUCAAGCAAAUGAUCAAGAAGUUGGAUGCCAGCUGUGCAGCGAACAAUCCCAGCCUAAAACUUACAUACACAGAAUGUCUGAGGGUUUGUGGCAACUGGUUAGCAGAAACGUGCUUAGAAAAUCCUGCGGUCAUCAUGCAGACCUAUCUAGAAAAGGCAGUAGAAGUUGCUGGAAAUUAUGAUGGAGAAAGUAGUGAUGAGCUAAGAAAUGGAAAAAUGAAGGCAUUUCUCUCAUUAGCCCGGUUUUCAGAUACUCAAUACCAAAGAAUUGAAAACUACAUGAAAUCAUCGGAAUUUGAAAACAAGCAAGCUCUCCUGAAAAGAGCCAAAGAGGAAGUAGGUCUCCUUAGGGAACAUAAAAUUCAGACAAACAGAUACACAGUAAAGGUUCAGCGAGAGCUGGAGUUGGAUGAAUUAGCCCUGCGUGCACUGAAAGAGGAUCGUAAACGCUUCUUAUGUAAAGCAGUUGAAAAUUAUAUCAACUGCUUAUUAAGUGGAGAAGAACAUGAUAUGUGGGUAUUCCGACUUUGUUCCCUCUGGCUUGAAAAUUCUGGAGUUUCUGAAGUCAAUGGCAUGAUGAAGAGAGACGGAAUGAAGAUUCCAACAUAUAAAUUUUUGCCUCUUAUGUACCAAUUGGCUGCUAGAAUGGGGACCAAGAUGAUGGGAGGCCUAGGAUUUCAUGAAGUCCUCAAUAAUCUAAUCUCUAGAAUUUCAAUGGAUCACCCCCAUCACACUUUGUUUAUUAUACUGGCCUUAGCAAAUGCAAACAGAGAUGAAUUUCUGACUAAACCAGAGGUAGCCAGAAGAAGCAGAAUAACUAAAAAUGUGCCUAAACAAAGCUCUCAGCUUGAUGAGGAUCGAACAGAGGCUGCAAAUAGAAUAAUAUGUACUAUCAGAAGUAGGAGACCUCAGAUGGUCAGAAGUGUUGAGGCACUUUGUGAUGCUUAUAUUAUAUUAGCAAACUUAGAUGCCACUCAGUGGAAGACUCAGAGAAAAGGCAUAAAUAUUCCAGCAGACCAGCCAAUUACUAAACUUAAGAAUUUAGAAGAUGUUGUUGUCCCUACUAUGGAAAUUAAGGUGGACCACACAGGAGAAUAUGGAAAUCUGGUGACUAUACAGUCAUUUAAAGCAGAAUUUCGCUUAGCAGGAGGUGUAAAUUUACCAAAAAUAAUAGAUUGUGUAGGUUCCGAUGGCAAGGAGAGGAGACAGCUUGUUAAGGGCCGUGAUGACCUGAGACAAGAUGCUGUCAUGCAACAGGUCUUCCAGAUGUGUAAUACAUUACUGCAGAGAAACACGGAAACUAGGAAGAGGAAAUUAACUAUCUGUACUUAUAAGGAUCUUCUCUUAGAAAUCUACAGAAGUAUAGGGGAGCCAGAUAGUUUGUA circ
ENSG00000149311:+:11:108315822:108335961 ENSG00000149311 ENST00000683174 + 11 108315823 108335961 22 GUACUUAUAAGGAUCUUCUCUU bsj
ENSG00000149311:+:11:108315822:108335961 ENSG00000149311 ENST00000683174 + 11 108315623 108315832 210 AUAAGUUGUCCUGCACAGUUCAAACUCGUGUUGUUUGAACUGUAUUUCAGAACUGUAUUUCAGAAUCAUUACAUUUUAUUUCUAUAACAUAACAUUUAGAGUUGGGAGUUACAUAUUGGUAAUGAUACAAUUUAAAAUUUGCUAAAUUUAUAGACCGAUUUUUUUUCCUUCUUCAAUUUUUGUUGUUUCCAUGUUUUCAGGAUCUUCUCU ie_up
ENSG00000149311:+:11:108315822:108335961 ENSG00000149311 ENST00000683174 + 11 108335952 108336161 210 UACUUAUAAGGUAACUAUUUGUACUUCUGUUAGUUCACCAAAAACAUAUAAAAGAUGCCAUUUGGUUGGGUGAAGUGGCUCAUGCCCAUAUUCAUAAUGCUUUGGGAGGCCAAGGUGGGAGGAUUGCUUGAGGCCAGGAGUUCGAGACCAGCCUCAGCAACAUAGUGAGACCCCAUCUUGACAAAAAGUUAAAAAAAAAAAAAAAGCCAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.0008841733 0.0001130379 2.967522 GCAUAA GCAUAA
HNRNPA1L2 3 314 0.0017683466 0.0004564992 1.953717 AUAGGG,UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PTBP2 2 267 0.0013262599 0.0003883867 1.771798 CUCUCU CUCUCU
HNRNPA0 4 453 0.0022104332 0.0006579386 1.748304 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
RBM28 8 822 0.0039787798 0.0011926949 1.738101 AGUAGA,AGUAGG,AGUAGU,GUGUAG,UGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM42 3 407 0.0017683466 0.0005912752 1.580499 AACUAA,AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 5 688 0.0026525199 0.0009985015 1.409527 AAGAAG AAGAAG
ERI1 4 632 0.0022104332 0.0009173461 1.268791 UUCAGA,UUUCAG UUCAGA,UUUCAG
TUT1 4 678 0.0022104332 0.0009840095 1.167585 AGAUAC,CAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
AKAP1 2 426 0.0013262599 0.0006188101 1.099795 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBM46 30 4554 0.0137046861 0.0066011240 1.053886 AAUCAU,AAUGAA,AAUGAU,AUCAAG,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPAB 11 1782 0.0053050398 0.0025839306 1.037796 AAAGAC,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NONO 9 1498 0.0044208665 0.0021723567 1.025068 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC5 15 2400 0.0070733864 0.0034795387 1.023505 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FMR1 2 117 0.13636364 0.007728583 4.141111 AAGGAU,UAAGGA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
ZFP36 2 126 0.13636364 0.008318051 4.035070 AUAAGG,UAAGGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SFPQ 1 153 0.09090909 0.010086455 3.172005 UAAGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 10 350 0.026190476 0.0017684401 3.888493 AAAAAA AAAAAA
PABPC4 12 462 0.030952381 0.0023327287 3.729960 AAAAAA,AAAAAG AAAAAA,AAAAAG
ERI1 5 228 0.014285714 0.0011537686 3.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
AGO2 10 677 0.026190476 0.0034159613 2.938679 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SART3 11 777 0.028571429 0.0039197904 2.865725 AAAAAA,AAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SYNCRIP 13 1041 0.033333333 0.0052498992 2.666604 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPU 13 1136 0.033333333 0.0057285369 2.540727 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPD 16 1488 0.040476190 0.0075020153 2.431723 AAAAAA,AAUUUA,AUUUAU,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GGUUGG,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC1 11 1321 0.028571429 0.0066606207 2.100845 AAAAAA,AAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
FUS 14 1711 0.035714286 0.0086255542 2.049812 AAAAAA,GGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM41 3 502 0.009523810 0.0025342604 1.909974 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM5 16 2359 0.040476190 0.0118903668 1.767280 AAAAAA,AAGGUA,AAGGUG,AGGUAA,CUUCUC,UCUUCU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
ELAVL4 18 2916 0.045238095 0.0146966949 1.622046 AAAAAA,AUUUAU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCUUCU,CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
DAZAP1 17 2878 0.042857143 0.0145052398 1.562962 AAAAAA,AAUUUA,AGGUAA,AGUUAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUAAAA,AUUUAA,CUAAAU,UAAAAA,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 CAUAUA,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPK 15 3244 0.038095238 0.0163492543 1.220386 AAAAAA,ACCCCA,CCCCAU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AAUGAU,AUCAUU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCU,CUUCUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UGUUUU,UUAGUU,UUAUUU,UUGGUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPA1 27 6340 0.066666667 0.0319478033 1.061249 AAAAAA,AAGGUG,AAUUUA,AUUUAA,AUUUAU,CCAAGG,GCCAAG,GGAGGA,UAGAGU,UAGUGA,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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