ENSG00000145996:+:6:21000226:21108463

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000145996:+:6:21000226:21108463 ENSG00000145996 ENST00000274695 + 6 21000227 21108463 390 GAAAUGGCAAAAAUCCUUAAUCACCCCAGAGUCUACGCUUUUCUGCACAUACCAGUCCAGUCUGCCUCCGACAGCGUACUCAUGGAAAUGAAAAGAGAAUACUGUGUGGCUGACUUCAAAAGAGUAGUGGAUUUUCUGAAAGAGAAAGUUCCUGGAAUAACUAUUGCUACAGAUAUUAUCUGUGGUUUUCCUGGAGAAACAGAUCAGGAUUUUCAAGAAACAGUGAAACUUGUUGAAGAGUACAAAUUCCCAAGCCUGUUUAUUAACCAAUUUUACCCAAGACCAGGAACUCCUGCUGCAAAAAUGGAACAAGUUCCAGCACAAGUGAAAAAGCAAAGGACAAAAGAUCUUUCUCGGGUGUUUCAUUCUUACAGUCCAUAUGAUCACAAGGAAAUGGCAAAAAUCCUUAAUCACCCCAGAGUCUACGCUUUUCUGCACAU circ
ENSG00000145996:+:6:21000226:21108463 ENSG00000145996 ENST00000274695 + 6 21000227 21108463 22 AUGAUCACAAGGAAAUGGCAAA bsj
ENSG00000145996:+:6:21000226:21108463 ENSG00000145996 ENST00000274695 + 6 21000027 21000236 210 UGUGGAAUCCUCUGAAAGUGAUAUUGAAUUCCCAAAUCUCAUCAUAGAAUAUUACCAACUGAUGUUCACUUUAAGAGCCUUGAUGAUUGGUCUGUUUUCAGCUAGUAUGUUUAUUUGCUUGCGCUUGUGGUGUUGAUGUGAGGAAAACCAUUCCACAAUUUGUUAAAAUGAUUAGUGUUUUCUCCUUCCAUUUUUUUAAGGAAAUGGCAA ie_up
ENSG00000145996:+:6:21000226:21108463 ENSG00000145996 ENST00000274695 + 6 21108454 21108663 210 UGAUCACAAGGUAAGAGAAGCAUGUUAAUAGCAUAUUAAGUAUUAAAGUCUUUCCGAAUGUAUAGUACAAUUUUCACCAACAUAUGGUGAUUCUGAAAUACACUUACCAAUUACAUUUAUAUUUCAAUUUAAAUUUUUUAGCUCUUUAUCCCUUUUAAAGAAAACAGAAAUGUUAUAUUUCUGAACUAUAAUAAUUAUAUUUUAUUCACA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 1 453 0.005128205 0.0006579386 2.962429 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.005128205 0.0007101099 2.852340 CAAGAC ACAAGA,CAAGAC
RBM28 2 822 0.007692308 0.0011926949 2.689191 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPN1 3 1222 0.010256410 0.0017723764 2.532769 AAAAGA AAAAGA,AGAAGA
TUT1 1 678 0.005128205 0.0009840095 2.381710 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CELF5 3 1415 0.010256410 0.0020520728 2.321372 GUGUGG,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 4 1782 0.012820513 0.0025839306 2.310815 GGUGUU,GUGUGG,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRP14 1 847 0.005128205 0.0012289250 2.061057 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SNRPB2 1 991 0.005128205 0.0014376103 1.834781 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 1 999 0.005128205 0.0014492040 1.823193 AAGGAA AAGGAA,GAAGGA,GGGGGG
A1CF 2 1642 0.007692308 0.0023810421 1.691823 GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
QKI 4 2805 0.012820513 0.0040664663 1.656606 ACUCAU,AUUAAC,UAAUCA,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SNRNP70 1 1237 0.005128205 0.0017941145 1.515182 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC4 1 1251 0.005128205 0.0018144033 1.498959 AAAAAG AAAAAA,AAAAAG
SSB 1 1260 0.005128205 0.0018274462 1.488625 CUGUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZFP36L2 1 1277 0.005128205 0.0018520827 1.469305 UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ACO1 1 1283 0.005128205 0.0018607779 1.462548 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
CSTF2 2 1967 0.007692308 0.0028520334 1.431426 GUGUUU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM3 2 2152 0.007692308 0.0031201361 1.301808 AAUACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
U2AF2 1 1477 0.005128205 0.0021419234 1.259547 UUUUCC UUUUCC,UUUUUC,UUUUUU
CELF6 3 2997 0.010256410 0.0043447134 1.239193 GUGUGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
NONO 1 1498 0.005128205 0.0021723567 1.239193 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF10 17 13860 0.046153846 0.0200874160 1.200159 AAAAGA,AAAGAG,AAAGGA,AAGAAA,AAGAGA,AAGGAA,AGAGAA,GAAAGA,GACAAA,GAGAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBM24 2 2357 0.007692308 0.0034172229 1.170592 GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
YTHDC1 6 5576 0.017948718 0.0080822104 1.151059 GAAUAC,GAGUAC,GCGUAC,UCCUGC,UGCUAC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
PABPC5 2 2400 0.007692308 0.0034795387 1.144520 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SNRPA 8 7380 0.023076923 0.0106965744 1.109302 AGUAGU,CCUGCU,GUAGUG,UCCUGC,UGCACA,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
G3BP2 1 1644 0.005128205 0.0023839405 1.105106 AGGAUU AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA3 1 5 0.09090909 0.0003929788 7.853829 CAAGGA AGGAGC,CAAGGA,CCAAGG,GCCAAG
HNRNPM 1 5 0.09090909 0.0003929788 7.853829 AAGGAA AAGGAA,GAAGGA
HNRNPA2B1 2 49 0.13636364 0.0032748232 5.379898 AAGGAA,CAAGGA AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
TRA2B 2 51 0.13636364 0.0034058161 5.323315 AAGGAA,AGGAAA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
RBMX 1 34 0.09090909 0.0022923762 5.309509 AAGGAA AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGGAAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
RBM5 2 56 0.13636364 0.0037332984 5.190864 AAGGAA,CAAGGA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
ZFP36 4 126 0.22727273 0.0083180508 4.772035 AAGGAA,ACAAGG,AGGAAA,CAAGGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
FMR1 1 117 0.09090909 0.0077285827 3.556149 AAGGAA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 CAAGGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF9 1 134 0.09090909 0.0088420225 3.361976 AGGAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SFPQ 1 153 0.09090909 0.0100864553 3.172005 AAGGAA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 1 160 0.09090909 0.0105449306 3.107875 AAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 3 625 0.18181818 0.0410007860 2.148773 ACAAGG,AGGAAA,CAAGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 1 84 0.004761905 0.0004282547 3.474998 UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PABPC3 4 310 0.011904762 0.0015669085 2.925546 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UAAUUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
PPIE 52 9262 0.126190476 0.0466696896 1.435045 AAAUUU,AAUAAU,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAUA,AUAAUU,AUAUUA,AUAUUU,AUUAAA,AUUAUA,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUAA,UAAUUA,UAUAAU,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAU,AUCAUA,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CCUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
TIAL1 29 5597 0.071428571 0.0282043531 1.340583 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUA,GUUUUC,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUU,GUGUUG,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SART3 3 777 0.009523810 0.0039197904 1.280762 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAGG,GUGGUG,GUGUUG,UGUGAG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUG,GUGUUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUUUAA,GAAAAC,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL2 44 9826 0.107142857 0.0495112858 1.113706 AAUUUA,AAUUUG,AAUUUU,AUAUUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUUAA,CUUUUA,GUUUUC,UAUAUU,UAUGUU,UAUUGA,UAUUUG,UAUUUU,UUAAGU,UUAUAU,UUAUUU,UUUAAG,UUUAUA,UUUAUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,GUCUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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