ENSG00000048405:-:7:127373341:127377329

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000048405:-:7:127373341:127377329 ENSG00000048405 ENST00000265827 - 7 127373342 127377329 1837 GAACUAAACAACUUAAGCAUAUUUUAUUAAAAGAUGUGGACACUAUUUUUGAAUGUAAGUUAUGCCGCAGUCUCUUCAGAGGAUUACCAAAUUUAAUUACCCAUAAAAAAUUCUACUGCCCACCAAGUCUCCAGAUGGAUGACAACCUUCCUGAUGUAAAUGAUAAACAAAGCCAAGCCAUAAAUGAUCUCCUAGAAGCCAUAUAUCCAAGUGUGGACAAACGAGAAUAUAUUAUUAAGCUAGAACCCAUAGAAACUAAUCAAAAUGCAGUAUUUCAAUAUAUUUCGAGGACUGAUAAUCCUAUUGAAGUCACAGAGUCAAGCAGUACUCCUGAACAAACCGAAGUUCAGAUACAGGAAACUAGCACUGAACAGUCAAAAACAGUACCGGUUACAGAUACAGAGGUGGAAACUGUAGAGCCCCCUCCUGUUGAGAUUGUUACAGAUGAAGUUGCACCUACAUCUGAUGAACAACCUCAGGAGUCGCAGGCUGACUUGGAAACUUCUGACAAUUCUGAUUUUGGUCACCAGUUGAUAUGUUGUCUUUGUAGAAAAGAAUUCAAUUCUAGACGAGGUGUUCGCCGUCACAUUCGAAAAGUACACAAGAAAAAGAUGGAAGAACUAAAAAAGUACAUUGAAACACGAAAGAAUCCAAACCAAUCCUCUAAAGGACGCAGUAAGAAUGUUCUAGUUCCAUUAAGUAGGAGUUGUCCAGUAUGUUGUAAAUCAUUUGCUACAAAAGCGAAUGUAAGGAGGCAUUUUGAUGAAGUUCAUAGAGGACUAAGGAGGGAUUCAAUUACUCCUGAUAUAGCAACAAAGCCUGGGCAACCUUUGUUCCUGGAUUCUAUUUCUCCUAAAAAAUCUUUUAAGACUCGAAAACAAAAGUCUUCUUCAAAGGCUGAAUACAAUUUAACUGCAUGCAAAUGCCUCCUUUGCAAGAGGAAAUAUAGUUCACAAAUAAUGCUUAAAAGACAUAUGCAAAUUGUCCACAAGAUAACUCUUUCUGGAACAAACUCUAAAAGAGAAAAAGGCCCUAAUAAUACUGCCAACAGUUCAGAAAUAAAAGUUAAAGUUGAACCAGCAGAUUCUGUAGAAUCUUCACCCCCUUCCAUUACCCAUUCUCCACAGAAUGAAUUAAAGGGAACAAAUCAUUCAAAUGAAAAAAAGAACACACCGGCAGCACAGAAAAAUAAAGUUAAACAAGACUCUGAAAGCCCUAAAUCAACUAGUCCGUCGGCUGCAGGUGGCCAGCAAAAAACCAGAAAACCAAAACUUUCAGCUGGCUUUGACUUUAAGCAACUUUACUGUAAACUUUGUAAACGUCAGUUUACUUCCAAACAGAACUUGACUAAACACAUCGAGUUGCACACAGAUGGAAAUAACAUUUAUGUUAAAUUCUACAAGUGUCCUCUUUGCACUUAUGAAACUCGUCGGAAACGUGAUGUGAUACGACAUAUAACUGUGGUUCAUAAAAAGUCAUCUCGUUAUCUUGGGAAAAUAACAGCCAGUUUAGAGAUCAGAGCUAUAAAAAAGCCUAUUGAUUUUGUUCUAAAUAAAGUGGCAAAAAGAGGCCCUUCGAGGGAUGAAGCAAAACAUAGUGAUUCAAAACAUGAUGGCACUUCUAACUCUCCUAGUAAAAAGUAUGAAGUAGCUGACGUCGGUAUUGAAGUAAAAGUCACAAAAAACUUUUCUCUUCACAGAUGCAAUAAAUGUGGAAAGGCAUUUGCCAAAAAGACUUACCUUGAACAUCAUAAGAAAACUCAUAAGGCAAAUGCUUCCAAUUCACCUGAAGGAAACAAAACCAAAGGCCGAAGUACAAGAUCUAAGGCUCUUGUCUGGAACUAAACAACUUAAGCAUAUUUUAUUAAAAGAUGUGGACACUAUUUUU circ
ENSG00000048405:-:7:127373341:127377329 ENSG00000048405 ENST00000265827 - 7 127373342 127377329 22 GCUCUUGUCUGGAACUAAACAA bsj
ENSG00000048405:-:7:127373341:127377329 ENSG00000048405 ENST00000265827 - 7 127377320 127377529 210 UUUCCAAAUGAUAGUAGGGUUUUGCUUAGAAUUUAGUCUAUAACUUAGUUCUAAAUAUACUGUGGUGGAAAUUGGCAAUGCCUAUAUUUUGUUUUCAAAGAGUAACUGCACUUUUGGUCUGUCAACAGUGGUUGUCCAGUUUAAAAGUGCAUGUUAAAGUUACCUUUUGUGUUAAGUUUUUCUUUUCUUUUUUCUCUCAGGAACUAAACA ie_up
ENSG00000048405:-:7:127373341:127377329 ENSG00000048405 ENST00000265827 - 7 127373142 127373351 210 CUCUUGUCUGGUGAGGAACAGUUAACAGAGUUUUGCUUUUUUCCCCCCAUCGAACUAAAAAAAAAAUCAUUUGACCAUAAUUUAUAGCUGGUUCCAUUUUAACACGUUUGCUUCCAUAUAUCUCAUGGCAAUGGGAACUGCAAGAGUAAUGUGCAUAUUGCAUUUACCUCUUCAGUGACCUUUAUUCCAGUGGCUUGGGAACAAAAGUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 2 156 0.001633097 0.0002275250 2.843514 AGGGAU AGGGAU
PABPC4 17 1251 0.009798585 0.0018144033 2.433078 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM42 4 407 0.002721829 0.0005912752 2.202675 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
RBMY1A1 5 489 0.003266195 0.0007101099 2.201497 ACAAGA,CAAGAC ACAAGA,CAAGAC
PABPC3 13 1234 0.007621121 0.0017897669 2.090232 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
IGHMBP2 8 813 0.004899292 0.0011796520 2.054212 AAAAAA AAAAAA
RBMS3 12 1283 0.007076756 0.0018607779 1.927182 AAUAUA,AUAUAG,AUAUAU,CAUAUA,UAUAGC,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SART3 24 2634 0.013609145 0.0038186524 1.833441 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
AKAP1 3 426 0.002177463 0.0006188101 1.815080 AUAUAU AUAUAU,UAUAUA
RBM3 19 2152 0.010887316 0.0031201361 1.802968 AAAACU,AAACGA,AAACUA,AAGACU,AAUACU,AGACGA,AUACGA,GAAACG,GAAACU,GAUACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPA0 3 453 0.002177463 0.0006579386 1.726624 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
PABPC1 37 4443 0.020685901 0.0064402624 1.683456 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CUAAUA,CUAAUC,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPL 40 5085 0.022318998 0.0073706513 1.598408 AAACAA,AAACAC,AAAUAA,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACGA,CACAAA,CACAAG,CACACA,CACACC,CACGAA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBMS1 3 497 0.002177463 0.0007217036 1.593170 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 4 632 0.002721829 0.0009173461 1.569038 UUCAGA,UUUCAG UUCAGA,UUUCAG
KHDRBS1 29 4064 0.016330974 0.0058910141 1.471023 AUAAAA,AUUUAA,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
PABPN1 8 1222 0.004899292 0.0017723764 1.466888 AAAAGA AAAAGA,AGAAGA
FXR1 2 411 0.001633097 0.0005970720 1.451634 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
AGO2 12 1830 0.007076756 0.0026534924 1.415196 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
KHDRBS3 23 3429 0.013064780 0.0049707696 1.394142 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAUA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PUM2 12 1890 0.007076756 0.0027404447 1.368678 GUAAAU,GUACAU,UAAAUA,UACAUC,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
IGF2BP3 32 4815 0.017964072 0.0069793662 1.363946 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACACAC,ACAUUC,CAAACA,CACACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
IGF2BP2 51 8408 0.028307022 0.0121863560 1.215893 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACACAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAAUUC,CACACA,CAUUCA,CCAAAC,CCAAUC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC,GCACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM28 4 822 0.002721829 0.0011926949 1.190351 AGUAGG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS2 10 1858 0.005988024 0.0026940701 1.152293 AAUAAA,AUAAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TUT1 3 678 0.002177463 0.0009840095 1.145904 AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ANKHD1 1 339 0.001088732 0.0004927293 1.143781 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM46 25 4554 0.014153511 0.0066011240 1.100376 AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAUA,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SNRNP70 6 1237 0.003810561 0.0017941145 1.086731 AAUCAA,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZCRB1 8 1605 0.004899292 0.0023274215 1.073841 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GCUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 8 1634 0.004899292 0.0023694485 1.048022 AAAAAA AAAAAA,UUUUUU
MATR3 3 739 0.002177463 0.0010724109 1.021791 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 7 1480 0.004354927 0.0021462711 1.020816 AACAAC,AACAUC,ACAACU,ACAUCA,ACAUCG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SAMD4A 1 10 0.09090909 0.0007204611 6.979360 CUGGAA CGGGAA,CGGGAC,CGGGCA,CGGGUA,CUGGAA,CUGGCA,CUGGCC,CUGGUA,GCUGGU
SFPQ 2 153 0.13636364 0.0100864553 3.756968 GUCUGG,UCUGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA,AGUAGG AAUUUA,AGAUAU,AGUAGG
IGHMBP2 5 350 0.014285714 0.0017684401 3.014024 AAAAAA AAAAAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AGO2 8 677 0.021428571 0.0034159613 2.649172 AAAAAA,AAAGUG,AAGUGC,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA AAAAAA,AAAAAG
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AAUAUA,AUAUAU,CAUAUA,CUAUAU,UAUAGC,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ACO1 3 325 0.009523810 0.0016424829 2.535660 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
NONO 3 364 0.009523810 0.0018389762 2.372636 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 AAAAAA,CCCCCC,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAAAAA,AAUUUA,AGUAGG,AUUUAU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
FUS 9 1711 0.023809524 0.0086255542 1.464850 AAAAAA,UGGUGA,UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUUUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUG,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUUAUU,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUUUAC,CUAAAA,CUAAAU,UAAAAA,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AAUGAU,AUCAUU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAAAAA,AAUUUA,AGUAGG,AGUUAA,AGUUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AACUAA,AAUUUA,ACUGCA,AGUAGG,CCUUUA,GAACUA,UAACAG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAUUUA,AGGAAC,AGUAGG,GUAGGG,UAGGGU,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
TIAL1 23 5597 0.057142857 0.0282043531 1.018655 AGUUUU,AUUUUA,AUUUUG,CAGUUU,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UUCAGU,UUUAAA,UUUAUU,UUUUAA,UUUUCA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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