ENSG00000106100:-:7:30446140:30455311

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000106100:-:7:30446140:30455311 ENSG00000106100 MSTRG.29665.1 - 7 30446141 30455311 2116 GUCCGCAAAAUUCUGGACCUGGUACAGAGCAAGGGCGAGGAGGUGUCCGAGUUCUUCCUCUACUUGCUCCAGCAACUCGCAGAUGCCUACGUGGACCUCAGGCCUUGGCUGCUGGAGAUCGGCUUCUCCCCUUCCCUGCUCACUCAGAGCAAAGUCGUGGUCAACACUGACCCAGUGAGCAGGUAUACCCAGCAGCUGCGACACCAUCUGGGCCGUGACUCCAAGUUCGUGCUGUGCUAUGCCCAGAAGGAGGAGCUGCUGCUGGAGGAGAUCUACAUGGACACCAUCAUGGAGCUGGUUGGCUUCAGCAAUGAGAGCCUGGGCAGCCUGAACAGCCUGGCCUGCCUCCUGGACCACACCACCGGCAUCCUCAAUGAGCAGGCUGCUUCAAGGAAAGUGACAGGCUGUGUCUGCAGGACCUGCUCUUCAAGCACUACUGCUACCCAGAGCGGGACCCCGAGGAGGUGUUUGCCUUCCUGCUGCGCUUCCCCCACGUGGCCCUCUUCACCUUCGAUGGCCUGGACGAGCUGCACUCGGACUUGGACCUGAGCCGCGUGCCUGACAGCUCCUGCCCCUGGGAGCCUGCCCACCCCCUGGUCUUGCUGGCCAACCUGCUCAGUGGGAAGCUGCUCAAGGGGGCUAGCAAGCUGCUCACAGCCCGCACAGGCAUCGAGGUCCCGCGCCAGUUCCUGCGGAAGAAGGUGCUUCUCCGGGGCUUCUCCCCCAGCCACCUGCGCGCCUAUGCCAGGAGGAUGUUCCCCGAGCGGGCCCUGCAGGACCGCCUGCUGAGCCAGCUGGAGGCCAACCCCAACCUCUGCAGCCUGUGCUCUGUGCCCCUCUUCUGCUGGAUCAUCUUCCGGUGCUUCCAGCACUUCCGUGCUGCCUUUGAAGGCUCACCACAGCUGCCCGACUGCACGAUGACCCUGACAGAUGUCUUCCUCCUGGUCACUGAGGUCCAUCUGAACAGGAUGCAGCCCAGCAGCCUGGUGCAGCGGAACACACGCAGCCCAGUGGAGACCCUCCACGCCGGCCGGGACACUCUGUGCUCGCUGGGGCAGGUGGCCCACCGGGGCAUGGAGAAGAGCCUCUUUGUCUUCACCCAGGAGGAGGUGCAGGCCUCCGGGCUGCAGGAGAGAGACAUGCAGCUGGGCUUCCUGCGGGCUUUGCCGGAGCUGGGCCCCGGGGGUGACCAGCAGUCCUAUGAGUUUUUCCACCUCACCCUCCAGGCCUUCUUUACAGCCUUCUUCCUCGUGCUGGACGACAGGGUGGGCACUCAGGAGCUGCUCAGGUUCUUCCAGGAGUGGAUGCCCCCUGCGGGGGCAGCGACCACGUCCUGCUAUCCUCCCUUCCUCCCGUUCCAGUGCCUGCAGGGCAGUGGUCCGGCGCGGGAAGACCUCUUCAAGAACAAGGAUCACUUCCAGUUCACCAACCUCUUCCUGUGCGGGCUGUUGUCCAAAGCCAAACAGAAACUCCUGCGGCAUCUGGUGCCCGCGGCAGCCCUGAGGAGAAAGCGCAAGGCCCUGUGGGCACACCUGUUUUCCAGCCUGCGGGGCUACCUGAAGAGCCUGCCCCGCGUUCAGGUCGAAAGCUUCAACCAGGUGCAGGCCAUGCCCACGUUCAUCUGGAUGCUGCGCUGCAUCUACGAGACACAGAGCCAGAAGGUGGGGCAGCUGGCGGCCAGGGGCAUCUGCGCCAACUACCUCAAGCUGACCUACUGCAACGCCUGCUCGGCCGACUGCAGCGCCCUCUCCUUCGUCCUGCAUCACUUCCCCAAGCGGCUGGCCCUAGACCUAGACAACAACAAUCUCAACGACUACGGCGUGCGGGAGCUGCAGCCCUGCUUCAGCCGCCUCACUGUUCUCAGACUCAGCGUAAACCAGAUCACUGACGGUGGGGUAAAGGUGCUAAGCGAAGAGCUGACCAAAUACAAAAUUGUGACCUAUUUGGGUUUAUACAACAACCAGAUCACCGAUGUCGGAGCCAGGUACGUCACCAAAAUCCUGGAUGAAUGCAAAGGCCUCACGCAUCUUAAACUGGGAAAAAACAAAAUAACAAGUGAAGGAGGGAAGUAUCUCGCCCUGGCUGUGAAGAACAGCAAAUCAAUCUCUGAGGUUGGGUCCGCAAAAUUCUGGACCUGGUACAGAGCAAGGGCGAGGAGGUGUCCGA circ
ENSG00000106100:-:7:30446140:30455311 ENSG00000106100 MSTRG.29665.1 - 7 30446141 30455311 22 UCUGAGGUUGGGUCCGCAAAAU bsj
ENSG00000106100:-:7:30446140:30455311 ENSG00000106100 MSTRG.29665.1 - 7 30455302 30455511 210 GUGGUUUUAUUUCUUGCUCAGGAGGUCAUUUCACAGAUUUUCGGGCUCCAAUAUGUUGACUGUCACAGCAGCUGGGGGGAUGGCAUAGCUACCGGCUGUACUAAGAACUCAGAGCCCUGCCCUGAGCCUGCCUGAGGGUCCUUAUGGUAGGAGGAUGCCCCUCAUGCCAGCCCGUGCCCUCAUGCUUGUGUCACCUCCAGGUCCGCAAAA ie_up
ENSG00000106100:-:7:30446140:30455311 ENSG00000106100 MSTRG.29665.1 - 7 30445941 30446150 210 CUGAGGUUGGGUGAGUAGAAGGGGAUGGAUGUAUGUGGUACAACCUGCUGUGUGUGUGGGGGGCGGGCCUUGCUGUUCUUUUCAUACAUCAGUACACCAGAAGGACCACUGGGGCUCGCUGUCGGGGAGAGAUAGUGGAGAGCUUUCACCAUGCUGCGAAACUGAAACCGUGCCCAUUAAGCAAUAACUCCCCGGUCCCCCUCCCCCCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 1 71 0.0009451796 0.0001043427 3.179259 GCGCGC GCGCGC
RBM14 6 478 0.0033081285 0.0006941687 2.252657 CGCGCC,CGCGGC,CGCGGG,GCGCGC,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM8A 7 611 0.0037807183 0.0008869128 2.091796 CGCGCC,GCGCGC,UGCGCC,UGCGCG,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PPRC1 6 780 0.0033081285 0.0011318283 1.547360 CCGCGC,CGCGCC,CGGCGC,GCGCGC,GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
IFIH1 7 904 0.0037807183 0.0013115296 1.527410 CCGCGG,GCCGCG,GGCCCU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM4 24 3065 0.0118147448 0.0044432593 1.410898 CCUCUU,CCUUCC,CCUUCU,CGCGGG,CUCUUU,CUUCCU,CUUCUU,GCGCGC,GCGCGG,UCCUUC CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
YBX1 54 7119 0.0259924386 0.0103183321 1.332882 ACACCA,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCUG,CCACAC,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GCCUGC,GUCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
SAMD4A 29 3992 0.0141776938 0.0057866714 1.292817 CGGGAA,CGGGAC,CGGGCC,CUGGAC,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCUGGA,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
RBM42 2 407 0.0014177694 0.0005912752 1.261721 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
YTHDC1 40 5576 0.0193761815 0.0080822104 1.261462 GAAUGC,GACUAC,GACUGC,GCCUAC,GCCUGC,GCGUGC,GGAUGC,GGCUAC,GGCUGC,UACUGC,UCCUGC,UCGUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
NXF1 1 286 0.0009451796 0.0004159215 1.184277 AACCUG AACCUG
ZC3H10 6 1053 0.0033081285 0.0015274610 1.114880 CAGCGA,CAGCGC,CGAGCG,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
MBNL1 84 13372 0.0401701323 0.0193802045 1.051539 AUGCCA,AUGCCC,CCUGCU,CGCUGC,CGCUUC,CUCGCU,CUGCCC,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GGCUUU,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCGCUG,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UUGCCG,UUGCCU,UUGCUC,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
CNOT4 1 314 0.0009451796 0.0004564992 1.049976 GACAGA GACAGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPH3 1 61 0.09090909 0.004060781 4.484596 UUGGGU AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGUCCG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBM25 1 53 0.004761905 0.0002720677 4.129501 UCGGGC AUCGGG,CGGGCA,UCGGGC
RBM42 1 103 0.004761905 0.0005239823 3.183949 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
CELF2 9 881 0.023809524 0.0044437727 2.421682 GUAUGU,GUGUGU,UAUGUG,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 6 669 0.016666667 0.0033756550 2.303726 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 6 776 0.016666667 0.0039147521 2.089973 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUG,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 3 505 0.009523810 0.0025493753 1.901395 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM24 6 888 0.016666667 0.0044790407 1.895704 GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CELF6 7 1196 0.019047619 0.0060308343 1.659181 GUGGGG,GUGUGG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
MBNL1 20 3258 0.050000000 0.0164197904 1.606492 AUGCCA,AUGCCC,AUGCUU,CCUGCU,CGCUGU,CUCGCU,CUGCCC,CUGCCU,CUGCUG,CUUGCU,CUUGUG,GCUGCG,GCUUGU,UCGCUG,UGCUGC,UGCUGU,UUGCUC,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
YTHDC1 7 1254 0.019047619 0.0063230552 1.590917 GCCUGC,GGAUGC,UCAUAC,UCAUGC,UGCUGC,UGGUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPH2 19 3198 0.047619048 0.0161174929 1.562911 AAGGGG,AGGGGA,AUGUGG,CUGGGG,GAAGGG,GGAGGA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,UCGGGC,UGGGGG,UGGGUG,UGUGGG,UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUGG,GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AGGGGA,AUGUGG,GAAGGG,GGAGGA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 18 3406 0.045238095 0.0171654575 1.398030 AAGGGG,AGGGGA,AUGUGG,CUGGGG,GAAGGG,GGAGGA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UCGGGC,UGGGGG,UGGGUG,UGUGGG,UUGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGGAG,GGGGAU GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPF 17 3360 0.042857143 0.0169336961 1.339639 AAGGGG,AGGGGA,AUGUGG,CUGGGG,GAAGGG,GGAGGA,GGAUGG,GGGAUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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