ENSG00000229807:-:X:73829067:73831274

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000229807:-:X:73829067:73831274 ENSG00000229807 ENST00000429829 - X 73829068 73831274 373 AUCUUCCUCAGAAGAAUAGGCUUGUUGUUUUACAGUGUUAGUGAUCCAUUCCCUUUGACGAUCCCUAGGUGGAGAUGGGGCAUGAGGAUCCUCCAGGGGAAAAGCUCACUACCACUGGGCAACAACCCUAGGUCAGGAGGUUCUGUCAAGAUACUUUCCUGGUCCCAGAUAGGAAGAUAAAGUCUCAAAAACAACCACCACACGUCAAGCUCUUCAUUGUUCCUAUCUGCCAAAUCAUUAUACUUCCUACAAGCAGUGCAGAGAGCUGAGUCUUCAGCAGGUCCAAGAAAUUUGAACACACUGAAGGAAGUCAGCCUUCCCACCUGAAGAUCAACAUGCCUGGCACUCUAGCACUUGAGGAUAGCUGAAUGAAAUCUUCCUCAGAAGAAUAGGCUUGUUGUUUUACAGUGUUAGUGAUCCAUU circ
ENSG00000229807:-:X:73829067:73831274 ENSG00000229807 ENST00000429829 - X 73829068 73831274 22 AGCUGAAUGAAAUCUUCCUCAG bsj
ENSG00000229807:-:X:73829067:73831274 ENSG00000229807 ENST00000429829 - X 73831265 73831474 210 GGAAUGAAUAGGAUAAUUUUUUUUUUUUUUGCUAAGUUGGUAGCCAGAAUAUAACAGCUCCGCACAACUGUAAAUGUCCACUCUUCAAUCCACAUGAAGAAAAGGGUAAAAAUAUGGUUGAACUCAACCACUAGUUGCCCAUUAGAACAGACUUUCCCAGUGUACUGCAUUUCAAUACUUUUUCUUUUAUCUCUUUUCAGAUCUUCCUCA ie_up
ENSG00000229807:-:X:73829067:73831274 ENSG00000229807 ENST00000429829 - X 73828868 73829077 210 GCUGAAUGAAGUAAGUUGUUGAUGUUGCAGUCCUGUGAGGAUCACUUCAGAACUGUUAUAACAGCUGUUUUUUGGGAGCUGGUGUUGGAUGGGGUGUGUUGGUCUAAUGUGAAGUGGGGCUAAAUGUGAGAUGGAAAGAUGACCAGUCUUCCAUAUUACUGACUGGGUUCACUGAAGCAACUCAAAGACAUUAUGGUCUUCUUACCAGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 339 0.005361930 0.0004927293 3.443885 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
TUT1 2 678 0.008042895 0.0009840095 3.030971 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM41 3 1318 0.010723861 0.0019115000 2.488047 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPM 2 999 0.008042895 0.0014492040 2.472454 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
MATR3 1 739 0.005361930 0.0010724109 2.321895 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
MSI1 6 2770 0.018766756 0.0040157442 2.224440 AGGAAG,AGGAGG,AGGUGG,UAGGAA,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC3 2 1234 0.008042895 0.0017897669 2.167943 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 2 1283 0.008042895 0.0018607779 2.111809 CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZNF638 3 1773 0.010723861 0.0025708878 2.060486 GGUUCU,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX2 2 1480 0.008042895 0.0021462711 1.905883 AACAAC AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
TARDBP 4 2654 0.013404826 0.0038476365 1.800708 GAAUGA,GUUGUU,UGAAUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBFOX1 1 1077 0.005361930 0.0015622419 1.779135 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
G3BP2 2 1644 0.008042895 0.0023839405 1.754367 AGGAUA,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RC3H1 2 1786 0.008042895 0.0025897275 1.634915 UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPN1 1 1222 0.005361930 0.0017723764 1.597067 AGAAGA AAAAGA,AGAAGA
SNRNP70 1 1237 0.005361930 0.0017941145 1.579481 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF4 5 3740 0.016085791 0.0054214720 1.569030 AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF2 2 1886 0.008042895 0.0027346479 1.556360 GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SSB 1 1260 0.005361930 0.0018274462 1.552924 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
IGF2BP2 11 8408 0.032171582 0.0121863560 1.400520 AAAAAC,AAAACA,AAAUCA,AACACA,ACACAC,CAAAUC,CCACAC,CCAUUC,GAAAUC,GAACAC,GCACUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
QKI 3 2805 0.010723861 0.0040664663 1.398977 AAUCAU,ACACAC,CACACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBMX 6 4925 0.018766756 0.0071387787 1.394430 AAGGAA,AGGAAG,AGUGUU,GAAGGA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ESRP2 2 2150 0.008042895 0.0031172377 1.367447 GGGAAA,GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM46 5 4554 0.016085791 0.0066011240 1.285003 AAUCAU,AAUGAA,AUCAUU,AUGAAA,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM4 3 3065 0.010723861 0.0044432593 1.271134 CCUUCC,CUUCCU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
PABPC5 2 2400 0.008042895 0.0034795387 1.208819 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP3 5 4815 0.016085791 0.0069793662 1.204619 AAAAAC,AAAACA,AAAUCA,AACACA,ACACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPL 5 5085 0.016085791 0.0073706513 1.125923 AAACAA,AACACA,ACACAC,ACCACA,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS3 3 3429 0.010723861 0.0049707696 1.109283 AGAUAA,AUAAAG,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF3 18 16536 0.050938338 0.0239654858 1.087794 ACCACC,ACGAUC,AUCAAC,AUCUUC,CACCAC,CACUAC,CAGAGA,CCACCA,CUACAA,CUCUUC,CUUCAG,CUUCAU,GAUCAA,UACUUC,UCUUCA,UCUUCC,UGUCAA AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
HNRNPLL 3 3534 0.010723861 0.0051229360 1.065782 ACACAC,ACCACA,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
YBX1 7 7119 0.021447721 0.0103183321 1.055615 AACCAC,ACCACA,ACCACC,CAACCA,CACCAC,CCACAC,CCACCA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
AGO2 1 1830 0.005361930 0.0026534924 1.014860 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2B 7 7329 0.021447721 0.0106226650 1.013679 AAGAAU,AAGGAA,AGAAGA,AGGAAG,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 1 1 0.09090909 0.0001309929 9.438792 AAUCUU CAUCUU
RBM46 1 14 0.09090909 0.0009824469 6.531901 AUGAAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
IGF2BP2 1 34 0.09090909 0.0022923762 5.309509 GAAAUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
SRSF9 1 134 0.09090909 0.0088420225 3.361976 AUGAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 AAAGAC,AAGACA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
U2AF2 11 1071 0.028571429 0.0054010480 2.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 14 1381 0.035714286 0.0069629182 2.358737 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
KHDRBS2 10 1051 0.026190476 0.0053002821 2.304901 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM6 1 191 0.004761905 0.0009673519 2.299426 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GUUGGU,GUUGUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
NOVA2 12 1434 0.030952381 0.0072299476 2.097993 AGACAU,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CELF4 6 776 0.016666667 0.0039147521 2.089973 GGUGUG,GGUGUU,GUGUGU,GUGUUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
NOVA1 10 1428 0.026190476 0.0071997179 1.863030 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
FUS 12 1711 0.030952381 0.0086255542 1.843361 GGGUGU,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TARDBP 6 1034 0.016666667 0.0052146312 1.676328 GAAUGA,GUGUGU,GUUGUU,UGAAUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF6 7 1196 0.019047619 0.0060308343 1.659181 GUGAGG,GUGGGG,GUGUUG,UGUGAG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 CUAAAU,UAAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUGUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAA,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACAGAC,ACUGAC,AGUAAG,CACUGA,UACUGA,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AGGAUA,AGUAAG,UAGGAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,GUGUUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 UCUAAU,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUU,CUUUUA,CUUUUC,CUUUUU,GUUUUU,UUUUAU,UUUUCU,UUUUGG,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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