ENSG00000169398:-:8:140846598:140890769

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169398:-:8:140846598:140890769 ENSG00000169398 ENST00000696786 - 8 140846599 140890769 562 AAUAUGACAGAUACCUAGCAUCUAGCAAAAUAAUGGCAGCUGCUUACCUUGACCCCAACUUGAAUCACACACCAAAUUCGAGUACUAAGACUCACCUGGGUACUGGUAUGGAACGUUCUCCUGGUGCAAUGGAGCGAGUAUUAAAGGUCUUUCAUUAUUUUGAAAGCAAUAGUGAGCCAACCACCUGGGCCAGUAUUAUCAGGCAUGGAGAUGCUACUGAUGUCAGGGGCAUCAUUCAGAAGAUAGUGGACAGUCACAAAGUAAAGCAUGUGGCCUGCUAUGGAUUCCGCCUCAGUCACCUGCGGUCAGAGGAGGUUCACUGGCUUCACGUGGAUAUGGGCGUCUCCAGUGUGAGGGAGAAGUAUGAGCUUGCUCACCCACCAGAGGAGUGGAAAUAUGAAUUGAGAAUUCGUUAUUUGCCAAAAGGAUUUCUAAACCAGUUUACUGAAGAUAAGCCAACUUUGAAUUUCUUCUAUCAACAGGUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGAAUAUGACAGAUACCUAGCAUCUAGCAAAAUAAUGGCAGCUGCUUACCUU circ
ENSG00000169398:-:8:140846598:140890769 ENSG00000169398 ENST00000696786 - 8 140846599 140890769 22 CUAGAAAUACGAAUAUGACAGA bsj
ENSG00000169398:-:8:140846598:140890769 ENSG00000169398 ENST00000696786 - 8 140890760 140890969 210 AUUCUGUAAAUCAGGUCCUACUCUGGGUAUGGGGAGAGACAGCUAUUAUUUUAGUGGAUUAGGUCUCUAUUCUCCUCAGACUCCUUCCGCAUAUAACAUAUCAAGAGAGAGUAUAGGACAUUUGAUAUAAACAACAUAUCACAUUGUAAUUGGUAGAUUUCAAGUAUUAUACACAAAAAAUUAUUUUGUUCUUUUAACAGAAUAUGACAG ie_up
ENSG00000169398:-:8:140846598:140890769 ENSG00000169398 ENST00000696786 - 8 140846399 140846608 210 UAGAAAUACGGUAAGAUGAUAACUAUACAUUGCGGCCUUUAUUUAUCAAUUUUUUAAUUAUUUUUGAAUAUUUUCCAGGUAUUUUCCUUUUCUUCAUAAGGAUUAUCAGUGAAAUACUGAAUAAAAUUUGAGUAAAUUAUGAACUAUUGGUUUGGUGCAAAAGUAAUUGCAUUUGUUGCUGUUAAUUUUUGUUUAUUAUUCAGAUGCCUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.003558719 0.0004564992 2.962674 GACAGA GACAGA
RBM42 1 407 0.003558719 0.0005912752 2.589456 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 1 411 0.003558719 0.0005970720 2.575381 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
TUT1 2 678 0.005338078 0.0009840095 2.439576 AAAUAC,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ZC3H10 3 1053 0.007117438 0.0015274610 2.220222 GAGCGA,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
ERI1 1 632 0.003558719 0.0009173461 1.955820 UUCAGA UUCAGA,UUUCAG
NOVA1 10 3872 0.019572954 0.0056127669 1.802077 ACCACC,AGUCAC,AUCAAC,CAGUCA,CAUUCA,UCAGUC,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBFOX1 2 1077 0.005338078 0.0015622419 1.772703 AGCAUG,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRNP70 2 1237 0.005338078 0.0017941145 1.573049 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 2 1277 0.005338078 0.0018520827 1.527172 UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
NONO 2 1498 0.005338078 0.0021723567 1.297059 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZRANB2 5 3173 0.010676157 0.0045997733 1.214758 AAAGGU,AGGUCU,GAGGUU,GUAAAG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM3 3 2152 0.007117438 0.0031201361 1.189749 AAGACU,AAUACG,AUACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
A1CF 2 1642 0.005338078 0.0023810421 1.164727 CAGUAU,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SF1 8 4931 0.016014235 0.0071474739 1.163850 ACAGUC,ACUAAG,CAGUCA,UACGAA,UACUAA,UACUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM24 3 2357 0.007117438 0.0034172229 1.058534 AGUGUG,GAGUGG,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZNF638 2 1773 0.005338078 0.0025708878 1.054054 CGUUCU,GGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX1 11 7119 0.021352313 0.0103183321 1.049183 AACCAC,ACACCA,ACCACC,CAACCA,CACACC,CAUCAU,CCACCA,CCUGCG,CUGCGG,GCCUGC,UGCGGU AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
PABPN1 1 1222 0.003558719 0.0017723764 1.005673 AGAAGA AAAAGA,AGAAGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC1 2 19 0.13636364 0.001309929 6.701826 ACGAAU,CGAAUA AAAAAA,ACAAAC,ACGAAU,AGAAAA,CAAACC,CAAAUA,CGAACA,CUAAUA,GAAAAA,GAAAAC
RBM3 1 20 0.09090909 0.001375426 6.046474 AUACGA AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
SF1 1 24 0.09090909 0.001637412 5.794936 UACGAA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
SRSF7 1 128 0.09090909 0.008449044 3.427565 ACGAAU AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF1 3 625 0.18181818 0.041000786 2.148773 ACGAAU,AUACGA,UACGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
A1CF 7 598 0.019047619 0.0030179363 2.657976 AGUAUA,AUCAGU,UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 8 774 0.021428571 0.0039046755 2.456261 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
ELAVL3 15 1928 0.038095238 0.0097188634 1.970751 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ELAVL1 24 3309 0.059523810 0.0166767432 1.835629 AUUUAU,UAUUUA,UAUUUU,UGGUUU,UUAUUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGACAG,AGGACA,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,GUAGAU,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PPIE 56 9262 0.135714286 0.0466696896 1.540015 AAAAAA,AAAAAU,AAAAUU,AAAUUA,AAAUUU,AAUAAA,AAUAUU,AAUUAU,AAUUUU,AUAAAA,AUAUAA,AUAUUU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUUA,UAAUUU,UAUAAA,UAUUAU,UAUUUA,UAUUUU,UUAAUU,UUAUUA,UUAUUU,UUUAAU,UUUAUU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
TIA1 30 5140 0.073809524 0.0259018541 1.510752 AUUUUC,AUUUUG,AUUUUU,CUCCUU,CUUUUA,CUUUUC,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUCU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
TIAL1 30 5597 0.073809524 0.0282043531 1.387889 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUC,UAAAUU,UAUUUU,UUAUUU,UUUAUU,UUUUAA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAUACG,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ELAVL2 49 9826 0.119047619 0.0495112858 1.265709 AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUA,UAAUUU,UAUUAU,UAUUUA,UAUUUU,UCUUUU,UUAAUU,UUAUAC,UUAUUU,UUCUUU,UUUAAU,UUUAGU,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
KHSRP 28 5764 0.069047619 0.0290457477 1.249265 AUAUUU,AUUAUU,AUUUAU,AUUUUA,CCUUCC,CGGCCU,CUCCUU,UAUUAU,UAUUUA,UAUUUU,UCCUUC,UGCCUC,UUAUUA,UUAUUU,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAACAA,AAAUAC,AAUAAA,ACACAA,CACAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,AUAAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUAUU,AUUGUA,CAGAAU,GUAAAU,GUAGAU,UGUAAA,UGUAAU,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AUCAAG,AUCAAU,AUGAUA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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