ENSG00000082898:-:2:61522610:61533903

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000082898:-:2:61522610:61533903 ENSG00000082898 ENST00000428210 - 2 61522611 61533903 1299 UAAUCUAUGCCAGCAAUUAUGACAAUGUUAGCAGACCAUGCAGCUCGUCAGCUGCUUGAUUUCAGCCAAAAACUGGAUAUCAACUUAUUAGAUAAUGUGGUGAAUUGCUUAUACCAUGGAGAAGGAGCCCAGCAAAGAAUGGCUCAAGAAGUACUGACACAUUUAAAGGAGCAUCCUGAUGCUUGGACAAGAGUCGACACAAUUUUGGAAUUUUCUCAGAAUAUGAAUACGAAAGUAAGCAAGUGGUGGUUUUAAAAUCUGUUAUUUCUUUUCUUCCAGUCAUAAACUUUGAGGAAGGUAUCUCAUUUUUAGUAUUAGCAUUUGUUAUCUCAAAUUAUUUUAUAUUGUUAAUUUGUUUCAAAAUUUAGUCUUAAGCAUAUAAUUAAUUCUUGCAAAUAGUCCUAAGAAUUAUGAAUGAAGUUUUGUAAUGGGACUAGUAUGCAAGGUGGCUUUUUUGGUUGUCUGAUUUUGUUUUUUUCUUUUUAGUAUAUGUAUACAGGUCUAAGUAGCAUAAAUUCUGAAUGUUAUUCAGAGAUUAAACAUAACAUUAAGGAAUUAUUUUGGGCAAGUAAUCAAUAUAAUACAGGCCAGGCACCUCUGACACCAAGUUGUGUGGACAGCUUAAAACCCUACUCCAUGGCAUUGGGCUUCUAAUGGGACAGCACUCAGUUUUUAUUUACAAUGGAAAAUGUUAUAAUUCUGGUCCUUUUUUAAGUUUGAACAGAAGGGUUGAUCAAAAUGUGUUUUGUCUGUUUUAGGCUUGAUGAUUCACGCUUCUCUUUAAACUGCCUUAAAGUAAUAAAUACUAUGGCAUUCUGUUUAAUACACGAAAGGUUUCCACUUGAUAUACAUUGUGUUAAAACAGAAGAUAGCCAUAUUCACAUCUGUUUCUGAAACCAGACUUUGUUAAUUAACAGUUUUAAAAUAUUAAUUAGUUUUGACAUCUUGUAAAUUUUAGGUCAAAAAUACAGUCCAGAACUUCCUCAAAGUGCUAACCUUAAGUAACAUAACAGUGUUUGCCUGUUUGCUUGCCUGGUAAAUUUUGCUUUUUAUACUGACAGACAUUACUAAUGUUUAAGUUGAUUUAUCAACAGUAUUUUUAAAAACUCAAAUUUGUCUUGUGAAAAAUGAGAUGAUUAGAGGAACAGAAAGAAAGCAACAGGAAGAAAAGGGGUGUCUUCCUGUGCAACUGACACAGCUAGGCUUUGACGGCAGGCCUCCACAAGUACUAUGGACUACAAAUUUUGGAAAAUGUGAUAAAAACAAGGUGGAAGAUUCUUCCAAGGAACCAGUGCGAAGUAAUCUAUGCCAGCAAUUAUGACAAUGUUAGCAGACCAUGCAGCUCGUCA circ
ENSG00000082898:-:2:61522610:61533903 ENSG00000082898 ENST00000428210 - 2 61522611 61533903 22 CCAGUGCGAAGUAAUCUAUGCC bsj
ENSG00000082898:-:2:61522610:61533903 ENSG00000082898 ENST00000428210 - 2 61533894 61534103 210 UAAUUUAUGUAAUUAUCAAAUAGCUAAGUAAUUUCAGCUUUUGUUACUUGCUUUUACUAUCUCAGUUUUCUGUAAUUAAAGUCUCUAAAGUAUUCAUUAAAAUAUUUGUAAUAACAUGGUUGAAGUAAAAUAACUUGUAGGAAGUUUUUGAUAAUACCAAAACUUGAUAGGCAGCUUCAAUUUUUUUUCUUUAUUUUCAGUAAUCUAUGC ie_up
ENSG00000082898:-:2:61522610:61533903 ENSG00000082898 ENST00000428210 - 2 61522411 61522620 210 CAGUGCGAAGGUAGGAAAAUAAAGAAUUAUAAAUUCAGAGUUUUGUUUUUCCUGGCAUUUUUAUUGUAGUUGACUGUUUGAGGGGGCAUGUAAUGAAUCUUUAGUAUAUUUUGCUCUAAUGGAGCUUAUUGCUUUUAUCAUGAAGCAAACAGGUCUGUUUGUAUUGGUGGGUACAGGAAGGCCACUUACAGGUUAUCUUUUGGGAGAAAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001539646 0.0001130379 3.767720 GCAUAA GCAUAA
A1CF 12 1642 0.010007698 0.0023810421 2.071445 AGUAUA,AUAAUU,CAGUAU,UAAUUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CSTF2 13 1967 0.010777521 0.0028520334 1.917963 GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TIAL1 70 10182 0.054657429 0.0147572438 1.888994 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUC,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 10 1605 0.008468052 0.0023274215 1.863298 AAUUAA,AUUUAA,GAAUUA,GAUUAA,GAUUUA,GCUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL1 37 5554 0.029253272 0.0080503280 1.861479 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CNOT4 1 314 0.001539646 0.0004564992 1.753914 GACAGA GACAGA
SSB 7 1260 0.006158584 0.0018274462 1.752770 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZFP36L2 7 1277 0.006158584 0.0018520827 1.733450 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PPIE 112 18315 0.086989992 0.0265436196 1.712484 AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUUA,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUUA,UAAUUU,UAUAAU,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
CPEB4 4 821 0.003849115 0.0011912456 1.692056 UUUUUU UUUUUU
DDX19B 4 821 0.003849115 0.0011912456 1.692056 UUUUUU UUUUUU
EIF4A3 4 821 0.003849115 0.0011912456 1.692056 UUUUUU UUUUUU
TIA1 55 9206 0.043110085 0.0133428208 1.691962 AUUUUC,AUUUUG,AUUUUU,CUUUUC,CUUUUU,GUUUUA,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBMS1 2 497 0.002309469 0.0007217036 1.678083 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ELAVL3 16 2867 0.013086990 0.0041563169 1.654756 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL2 108 18468 0.083910701 0.0267653478 1.648488 AAUUUA,AAUUUG,AAUUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUUU,GAUUUA,GAUUUU,GUUUUA,GUUUUU,UAAGUU,UAAUUU,UAUACU,UAUAUU,UAUUGU,UAUUUA,UAUUUU,UCAUUU,UCUUUU,UGAUUU,UUAAGU,UUAAUU,UUAGUU,UUAUAC,UUAUAU,UUAUUU,UUCUUU,UUGAUU,UUUAAG,UUUAAU,UUUAGU,UUUAUA,UUUAUU,UUUCUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TUT1 3 678 0.003079292 0.0009840095 1.645854 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPCL1 11 2062 0.009237875 0.0029897078 1.627557 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPC 19 3471 0.015396459 0.0050316361 1.613499 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 12 2261 0.010007698 0.0032780993 1.610179 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PABPC3 6 1234 0.005388761 0.0017897669 1.590182 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL4 26 5105 0.020785219 0.0073996354 1.490032 AUUUAU,GUAUCU,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CELF5 6 1415 0.005388761 0.0020520728 1.392872 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TARDBP 12 2654 0.010007698 0.0038476365 1.379066 GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUUGUG,GUUUUG,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
FXR1 1 411 0.001539646 0.0005970720 1.366622 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
KHDRBS2 8 1858 0.006928406 0.0026940701 1.362736 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ERI1 2 632 0.002309469 0.0009173461 1.332023 UUCAGA,UUUCAG UUCAGA,UUUCAG
KHDRBS1 18 4064 0.014626636 0.0058910141 1.312010 AUAAAA,AUUUAA,AUUUAC,CAAAAU,UAAAAA,UAAAAC,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 15 3429 0.012317167 0.0049707696 1.309129 AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PUM1 26 5823 0.020785219 0.0084401638 1.300215 AAUAUU,AAUGUU,ACAUAA,AGAAUU,AGAUAA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUAUAU,GUCCAG,UAAAUA,UAAUGU,UAGAUA,UGUAAA,UGUAAU,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CELF1 10 2391 0.008468052 0.0034664959 1.288552 GUUGUG,UGUCUG,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RALY 6 1553 0.005388761 0.0022520629 1.258706 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMX 21 4925 0.016936105 0.0071387787 1.246353 AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,GAAGGA,GGAAGG,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPA0 1 453 0.001539646 0.0006579386 1.226574 AAUUUA AAUUUA,AGAUAU,AGUAGG
ENOX1 13 3195 0.010777521 0.0046316558 1.218425 AAUACA,AUACAG,CAGACA,GGACAG,UAUACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
EIF4B 4 1179 0.003849115 0.0017100607 1.170479 CUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PUM2 7 1890 0.006158584 0.0027404447 1.168189 GUAAAU,GUAUAU,UAAAUA,UAGAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBMY1A1 1 489 0.001539646 0.0007101099 1.116484 ACAAGA ACAAGA,CAAGAC
U2AF2 5 1477 0.004618938 0.0021419234 1.108654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
SF1 19 4931 0.015396459 0.0071474739 1.107093 ACAGAC,ACAGUC,ACUAAU,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CAGUCA,GCUAAC,UACGAA,UACUAA,UACUGA,UAUACU,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
MATR3 2 739 0.002309469 0.0010724109 1.106703 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
NONO 5 1498 0.004618938 0.0021723567 1.088300 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPM 3 999 0.003079292 0.0014492040 1.087338 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
CELF4 6 1782 0.005388761 0.0025839306 1.060386 GUGUGG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZRANB2 11 3173 0.009237875 0.0045997733 1.005998 AAAGGU,AGGUAU,AGGUCU,AGGUUU,GGUAAA,GGUGGU,GUGGUG,UAAAGG,UGGUAA,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMX 1 34 0.09090909 0.002292376 5.309509 AAGUAA AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AAGUAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 GUAUUG,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AGUAUA,UAAUUA,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
MSI1 6 961 0.016666667 0.0048468360 1.781850 AGGAAG,AGGUAG,UAGGAA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
TIAL1 36 5597 0.088095238 0.0282043531 1.643146 AAUUUU,AGUUUU,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUG,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAUU,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TIA1 31 5140 0.076190476 0.0259018541 1.556555 AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUG,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMX 7 1316 0.019047619 0.0066354293 1.521349 AAGUAA,ACCAAA,AGGAAG,AUCAAA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
KHDRBS3 9 1646 0.023809524 0.0082980653 1.520692 AAAUAA,AAUAAA,AUAAAG,AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUAUU,AGAAUU,AUUGUA,CUUGUA,GUAAUA,GUAUAU,UGUAAU,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AUUUAU,UAUUUU,UCUAAU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAAGAA,AAGAAU,AGGAAA,AGGAAG,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAA,AUCAAA,AUCAUG,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AAUUUA,AGGAAA,AGGAAG,AGGUAG,AGGUUA,AGUAAA,AGUAUA,UAGGAA,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL2 49 9826 0.119047619 0.0495112858 1.265709 AAUUUA,AAUUUU,AUAUUU,AUUUAU,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUUA,GUAUUG,GUUUUC,GUUUUU,UAAUUU,UAUAUU,UAUUGU,UAUUUG,UAUUUU,UCUUUU,UGUAUU,UUACUU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUACU,UUUAGU,UUUAUG,UUUAUU,UUUCUU,UUUGAU,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAUA,AAAUAA,AAAUAU,AAUAAA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUUU,AUUAAA,AUUAUA,AUUUAU,AUUUUU,UAAAAU,UAAAUU,UAAUAA,UAAUUA,UAAUUU,UAUAAA,UAUAUU,UAUUUU,UUAAAA,UUAUAA,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO2 2 677 0.007142857 0.0034159613 1.064210 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AGAAAG,AGGAAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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