ENSG00000005810:-:13:77055557:77062697

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000005810:-:13:77055557:77062697 ENSG00000005810 ENST00000682321 - 13 77055558 77062697 975 CUCUGGCUUGCUCUCGCAUCCCUAUGUGUUCUUGAUCAGGACCACGUAGAUCGUCUCUCCUCGGGGAGAUGGAUGGGAAAGGAUGGACAACAAAAACAAAUGCCUAUGUGUGAUAACCAUGAUGAUGGUGAAACUGCAGCAAUCAUUUUAUGCAAUGUCUGUGGAAAUUUAUGUACAGACUGUGACAGAUUCCUUCACCUUCAUCGAAGAACCAAAACUCAUCAAAGACAGGUCUUCAAAGAAGAAGAAGAAGCUAUAAAGGUUGACCUUCAUGAAGGUUGUGGUAGAACCAAAUUGUUCUGGUUGAUGGCACUGGCAGAUUCUAAAACAAUGAAGGCAAUGGUGGAAUUCCGAGAACACACAGGCAAACCCACCACGAGUAGCUCAGAAGCAUGUCGCUUCUGUGGUUCCAGGAGUGGAACAGAGUUAUCUGCUGUUGGCAGUGUUUGUUCUGAUGCAGAUUGCCAGGAAUACGCUAAGAUAGCCUGUAGUAAGACGCAUCCUUGUGGCCAUCCAUGCGGGGGUGUUAAAAACGAAGAGCACUGUCUGCCCUGUCUACACGGCUGUGACAAAAGUGCCACAAGCCUGAAGCAAGACGCCGAUGACAUGUGCAUGAUAUGUUUCACCGAAGCGCUCUCGGCAGCACCAGCCAUUCAGCUGGAUUGUAGUCACAUAUUCCACUUACAGUGCUGUCGGCGAGUAUUAGAAAAUCGAUGGCUUGGCCCAAGGAUAACAUUUGGAUUUAUAUCUUGUCCCAUUUGCAAGAACAAAAUUAAUCACAUAGUACUAAAAGACCUACUUGAUCCAAUAAAAGAACUCUAUGAGGAUGUCAGAAGAAAAGCCUUAAUGAGAUUGGAAUAUGAAGGUCUGCAUAAGAGUGAAGCUAUCACAACUCCUGGUGUGAGGUUUUAUAAUGACCCAGCUGGCUAUGCAAUGAAUAGAUAUGCAUAUUAUGUGUGCUACAAAUGCAGAAAGCUCUGGCUUGCUCUCGCAUCCCUAUGUGUUCUUGAUCAGGACCACGUAGA circ
ENSG00000005810:-:13:77055557:77062697 ENSG00000005810 ENST00000682321 - 13 77055558 77062697 22 AAUGCAGAAAGCUCUGGCUUGC bsj
ENSG00000005810:-:13:77055557:77062697 ENSG00000005810 ENST00000682321 - 13 77062688 77062897 210 UGAGUGCCUCCUGUGUGCAUGGCACAUAGGACAGUGAUCGUGUAUGCCUGCUACCACAUCAGGAAGACUUGAGUGCCACUGAGUAUCUAUGUAUUUUCAAAAUCAGCCAGCAUUUAUUGAGCUGUUGUGAUGUGUCACAGUCAGCAUUUCAUAAGUCUUUCCUAAAAAUUCAGUGGUGUAACAGCCUUCCCUUUCAACAGCUCUGGCUUG ie_up
ENSG00000005810:-:13:77055557:77062697 ENSG00000005810 ENST00000682321 - 13 77055358 77055567 210 AUGCAGAAAGGUAUGCUAUAAAUUAUACUGAGAAGUUUUAAAAACUAGAGCUUACCUAUAUGAUUAAGAAUUCAAAUUGUACAGUGAUAUCUAAUUAUUCCAUCUUAAGCCUGAAGUUAAAAAUAAGAUAGCUUGGUACAAUGUUUCCCAAUGUUUCCAGUAAAACUUGUUUACUUAACUUGUUUGGGGAUUCUUUAUUUAACCUGAACA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.002051282 0.0001130379 4.181647 GCAUAA GCAUAA
SRSF11 4 688 0.005128205 0.0009985015 2.360617 AAGAAG AAGAAG
HNRNPA0 2 453 0.003076923 0.0006579386 2.225464 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
CNOT4 1 314 0.002051282 0.0004564992 2.167841 GACAGA GACAGA
CELF2 10 1886 0.011282051 0.0027346479 2.044602 AUGUGU,GUCUGU,UAUGUG,UAUGUU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPN1 6 1222 0.007179487 0.0017723764 2.018196 AAAAGA,AGAAGA AAAAGA,AGAAGA
AGO1 2 548 0.003076923 0.0007956130 1.951350 GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
G3BP2 7 1644 0.008205128 0.0023839405 1.783178 AGGAUA,AGGAUG,GGAUAA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 3 822 0.004102564 0.0011926949 1.782301 GAGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
FXR1 1 411 0.002051282 0.0005970720 1.780549 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SRP14 3 847 0.004102564 0.0012289250 1.739129 CCUGUA,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBFOX1 4 1077 0.005128205 0.0015622419 1.714836 AGCAUG,GCAUGA,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CELF1 10 2391 0.011282051 0.0034664959 1.702479 CUGUCU,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBFOX2 1 452 0.002051282 0.0006564894 1.643682 UGCAUG UGACUG,UGCAUG
RBMY1A1 1 489 0.002051282 0.0007101099 1.530412 CAAGAC ACAAGA,CAAGAC
PABPC3 4 1234 0.005128205 0.0017897669 1.518682 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ZNF638 6 1773 0.007179487 0.0025708878 1.481614 GGUUGU,GUUCUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 6 1782 0.007179487 0.0025839306 1.474313 GGUGUG,GGUGUU,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 6 1782 0.007179487 0.0025839306 1.474313 AAAGAC,AAGACA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SRSF4 13 3740 0.014358974 0.0054214720 1.405196 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM3 7 2152 0.008205128 0.0031201361 1.394917 AAAACG,AAAACU,AAACGA,AAGACG,AAUACG,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CELF5 4 1415 0.005128205 0.0020520728 1.321372 GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM24 7 2357 0.008205128 0.0034172229 1.263702 AGAGUG,GAGUGA,GAGUGG,GUGUGA,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
NELFE 9 3028 0.010256410 0.0043896388 1.224352 CUCUGG,CUGGCU,CUGGUU,GUCUCU,UCUCUC,UCUGGC,UCUGGU,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SSB 3 1260 0.004102564 0.0018274462 1.166697 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SRSF5 27 8869 0.028717949 0.0128544391 1.159686 AAGAAG,AGAAGA,AUAAAG,CACAUA,CACGGC,CACGUA,CGCAUC,GAAGAA,UAAAGG,UACAGA,UGCAGA,UGCAGC,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
RBM46 13 4554 0.014358974 0.0066011240 1.121169 AAUCAU,AAUGAA,AUCAAA,AUCAUU,AUGAAG,AUGAAU,AUGAUA,AUGAUG,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CSTF2 5 1967 0.006153846 0.0028520334 1.109498 GUGUUU,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF6 8 2997 0.009230769 0.0043447134 1.087190 GUGAGG,UGUGAG,UGUGAU,UGUGGU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM6 2 1054 0.003076923 0.0015289102 1.008985 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ACO1 3 325 0.009523810 0.0016424829 2.535660 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAAACU,AAACUA,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGGACA,GGACAG,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 ACUUAA,AUUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF5 8 1578 0.021428571 0.0079554615 1.429518 AACAGC,AGGAAG,CAACAG,CACAUA,CACAUC,GGAAGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SNRPA 10 1947 0.026190476 0.0098145909 1.416042 CCUGCU,CUGCUA,GGUAUG,GUAUGC,GUUUCC,UAUGCU,UUACCU,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,AAAAUC,AAAUCA,AAAUUC,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUUUAA,CAAAAU,CUAAAA,UAAAAA,UAAAAC,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GAGUGC,GCCUGC,UGCUAC,UGGUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACAGUC,CACUGA,CAGUCA,UACUGA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUUGUG,UGUGUG,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCUAA,UAACCU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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