ENSG00000126016:-:X:112804946:112832370

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000126016:-:X:112804946:112832370 ENSG00000126016 ENST00000371959 - X 112804947 112832370 2064 AGCUGCUAAGAAGGACAAAUAAGAUAGCAGAGUGAAAGAGCUUUUGUCUCCUUAGAAGGAAGGCUGAGAAACUAAAGAGUGACCAGUGGUUGGACUCUUGGCGGCGCUUACCCUGAACCUGAGUGUUAGGGGAGAGGGAAUCUGCCGUUGCGGUUUCUGGAGCUGCUCAUAAGCAAGAAUUCCCUAUCCUGAUCAAGGCUUUAAGCCUAAAAGAAAGCAGAAAUAGGUCAAGGGCAGCCCAGGUGCCCAAUUUCUCUCUCUCUUCACAAGGCACCACCAGCAAUAGAGAUGAGAAAUUCUGAAGAACAGCCAAGUGGAGGGACCACGGUAUUGCAGCGUUUGCUACAAGAGCAGCUUCGCUAUGGCAAUCCUAGUGAGAAUCGCAGCCUGCUUGCCAUACACCAGCAAGCCACAGGGAAUGGCCCUCCUUUCCCCAGUGGCAGUGGGAACCCGGGCCCUCAGAGUGAUGUGUUGAGUCCCCAAGACCACCACCAACAGCUUGUGGCUCAUGCUGCUCGACAAGAACCCCAGGGGCAGGAAAUCCAGUCAGAAAACCUCAUCAUGGAGAAGCAGCUGUCUCCUCGAAUGCAAAAUAAUGAAGAACUCCCGACCUAUGAAGAAGCCAAGGUCCAGUCCCAGUACUUUCGGGGCCAACAGCAUGCCAGUGUUGGAGCUGCCUUCUAUGUCACUGGAGUCACCAACCAGAAGAUGAGGACUGAGGGACGCCCAUCAGUUCAGCGGCUCAAUCCUGGAAAGAUGCACCAAGAUGAGGGACUCAGAGACCUUAAGCAAGGGCAUGUCCGUUCCUUGAGUGAACGACUAAUGCAGAUGUCACUGGCCACCAGUGGAGUUAAGGCCCAUCCACCUGUUACCAGUGCUCCCCUCUCCCCACCACAACCCAAUGACCUCUACAAGAAUCCCACAAGUUCCAGUGAAUUCUACAAGGCCCAAGGGCCACUUCCUAACCAGCAUAGCCUGAAGGGCAUGGAACACCGAGGCCCCCCACCAGAAUAUCCCUUCAAGGGCAUGCCACCCCAAUCUGUAGUGUGCAAGCCCCAAGAGCCAGGGCACUUCUAUAGUGAGCAUCGCCUGAACCAGCCAGGGAGAACAGAGGGGCAACUGAUGAGGUAUCAGCAUCCCCCUGAGUAUGGAGCAGCCAGGCCAGCGCAGGACAUCUCAUUGCCAUUGUCAGCCAGGAACUCGCAGCCUCACAGCCCUACUUCUUCUCUGACCUCUGGGGGGUCCUUGCCCUUGCUACAAUCUCCACCAUCCACUAGAUUGUCUCCUGCCCGACACCCCUUGGUCCCAAACCAGGGAGACCAUUCAGCUCACCUGCCUAGGCCGCAGCAGCAUUUCCUUCCUAAUCAGGCUCACCAGGGGGAUCAUUACCGUCUCUCCCAACCUGGCCUGAGUCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAUCAUCACCAUCACCACCAACAACAGCAGCAGCAGCAGCCACAGCAGCAGCCAGGAGAAGCCUAUUCAGCUAUGCCUCGGGCUCAGCCAUCCUCUGCUUCUUAUCAGCCAGUGCCAGCAGACCCUUUUGCCAUUGUUUCCAGAGCCCAGCAGAUGGUUGAGAUCCUCUCAGACGAGAACCGGAACUUGAGGCAAGAGUUGGAAGGAUGCUAUGAGAAGGUGGCAAGACUGCAGAAGGUGGAGACAGAAAUCCAGCGCGUCUCGGAGGCAUAUGAGAACCUCGUGAAGUCAUCCUCCAAAAGAGAGGCCCUAGAGAAAGCCAUGAGAAACAAGCUAGAGGGCGAGAUUCGGAGGAUGCAUGAUUUCAACAGGGAUCUGAGAGAGCGUCUAGAGACUGCCAACAAGCAGCUUGCAGAGAAGGAAUAUGAGGGGUCAGAGGACACCAGAAAAACCAUCUCGCAGCUCUUUGCAAAAAAUAAAGAAAGCCAGCGUGAGAAGGAGAAGCUGGAAGCGGAGCUGGCCACUGCCCGUUCUACCAAUGAGGACCAAAGACGACACAUCGAAAUCCGAGAUCAGGCCCUGAGUAAUGCCCAGGCCAAGGUGGUAAAGCUGGAAGAAGAGAGCUGCUAAGAAGGACAAAUAAGAUAGCAGAGUGAAAGAGCUUUUGUCUC circ
ENSG00000126016:-:X:112804946:112832370 ENSG00000126016 ENST00000371959 - X 112804947 112832370 22 UGGAAGAAGAGAGCUGCUAAGA bsj
ENSG00000126016:-:X:112804946:112832370 ENSG00000126016 ENST00000371959 - X 112832361 112832570 210 GGCAAUUCUGUGGAGGGUUAUGUCUUAGAACCAAGCACAGGGCAGGAAGUCGCAAGACCUGGGUUCCAAUGCUGGCCCUACCAAUGGGCAACAGUGAAAUUCUGGUCCAAUUAGUUAUGAUUAGCUAUCUGUUCUGGACUUGAGCUUCCCUCUCCAGUUCUAAAAUGGAAUUAAUCACAUCUGCCUUUAUUUCCCCACAGAGCUGCUAAG ie_up
ENSG00000126016:-:X:112804946:112832370 ENSG00000126016 ENST00000371959 - X 112804747 112804956 210 GGAAGAAGAGGUAUGGUUUCCUCAGGUAGCAUAUGAGCCUGGGGGUGGGAGGGCUGGGAAAUCGGGGACACUGGGCUCCACAUUGUGGUGAAUUGGCAGCUGCAUAAUCCCCAGAAGGGAGGUGCCAUCUGCUGCUCCUAGUUUCCACUGUGCUGAUGUGAGUGGACUUUGCUUUCUUUUCUCUUCUUGGUAAAUUCUUUUCUUUUGCUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 3 267 0.0019379845 0.0003883867 2.318991 CUCUCU CUCUCU
ESRP1 1 156 0.0009689922 0.0002275250 2.090460 AGGGAU AGGGAU
RBMY1A1 5 489 0.0029069767 0.0007101099 2.033405 ACAAGA,CAAGAC ACAAGA,CAAGAC
NXF1 2 286 0.0014534884 0.0004159215 1.805136 AACCUG AACCUG
HNRNPM 8 999 0.0043604651 0.0014492040 1.589221 AAGGAA,GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
ANKHD1 2 339 0.0014534884 0.0004927293 1.560652 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM25 1 268 0.0009689922 0.0003898359 1.313618 UCGGGC AUCGGG,CGGGCA,UCGGGC
ACO1 8 1283 0.0043604651 0.0018607779 1.228576 CAGUGA,CAGUGC,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZC3H10 6 1053 0.0033914729 0.0015274610 1.150776 CAGCGC,CCAGCG,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM6 6 1054 0.0033914729 0.0015289102 1.149408 AAUCCA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
IFIH1 5 904 0.0029069767 0.0013115296 1.148269 GGCCCU,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBFOX1 6 1077 0.0033914729 0.0015622419 1.118294 AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CNOT4 1 314 0.0009689922 0.0004564992 1.085873 GACAGA GACAGA
HNRNPA1L2 1 314 0.0009689922 0.0004564992 1.085873 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SNRPB2 5 991 0.0029069767 0.0014376103 1.015847 AUUGCA,GUAUUG,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF10 3 160 0.18181818 0.010544931 4.107875 AAGAGA,AGAGAG,GAGAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF7 1 128 0.09090909 0.008449044 3.427565 AGAGAG AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SFPQ 1 153 0.09090909 0.010086455 3.172005 AGAGAG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 2 479 0.13636364 0.031438302 2.116864 AAGAGA,GAGCUG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 AAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
RBM25 1 53 0.004761905 0.0002720677 4.129501 AUCGGG AUCGGG,CGGGCA,UCGGGC
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
SRSF4 5 558 0.014285714 0.0028164047 2.342647 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF5 9 1578 0.023809524 0.0079554615 1.581521 AAGAAG,AGAAGA,AGGAAG,CAACAG,CACAGA,CACAUC,GAAGAA,GGAAGA,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGAC,CUGGCC,CUGGUC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAGAAG,AAGAGG,AGAAGA,AGGAAG,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAG,AGAAGA,AGAAGG,AGGAAG,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
MBNL1 14 3258 0.035714286 0.0164197904 1.121066 CUGCCU,CUGCUA,CUGCUC,CUGCUG,GCUGCU,GUGCUG,UCUGCU,UGCUGC,UGCUUU,UUGCUC,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGGG,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGUAG,AGGUAU,GGUAAA,GUGGUG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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