ENSG00000177479:+:3:48922747:48927813

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000177479:+:3:48922747:48927813 ENSG00000177479 MSTRG.22928.3 + 3 48922748 48927813 670 AUGGAAAUCAUAUUAUGUAGAAUACUUGGGUGACAUCUGCCUGAGAGAUCUCCAAGAAUUACAGAUUGAGUCUCGCUCUGUUGCCCAGGCUGGAGUGCAGUGGUGCAAUCUCUGCUCACUGCAACCUCCGUCUCCCGAGUUCAAGCAGUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGUGCAUGCCAUCAUGCCUAGCUAAUUUUUGUAUUGUUAGUAGAGAUGGGGUUUCACGUGUUAGCCAGGAUGGUCUGGAUCUCCUGACCUCGUGAUCUGCCUGCCUCGGCCUCCCAAAGUGCUGGGAUUACAGAAGACAAAAAUACUAAUGCAUUUGAGAAAGCGGUAGUUUUGGGGGGAGGGGGAAAAAGCAACUGCUUUCCUGAUCUGCAACUUGGCUGGAUGCUAAGAUGUCAGUGGACAUGAAUAGCCAGGGGUCUGACAGCAAUGAAGAGGACUAUGACCCAAAUUGUGAGGAAGAGGAAGAAGAAGAAGAAGACGACCCUGGGGACAUAGAGGACUAUUACGUGGGAGUAGCCAGCGAUGUGGAGCAGCAGGGGGCUGAUGCCUUUGAUCCCGAGGAGUACCAGUUCACUUGCUUGACCUACAAGGAAUCUGAGGGUGCCCUCAAUGAGCACAUGACCAGCUUAGCUUCUGUCCUAAAGAUGGAAAUCAUAUUAUGUAGAAUACUUGGGUGACAUCUGCCUGAGAGAUC circ
ENSG00000177479:+:3:48922747:48927813 ENSG00000177479 MSTRG.22928.3 + 3 48922748 48927813 22 CUGUCCUAAAGAUGGAAAUCAU bsj
ENSG00000177479:+:3:48922747:48927813 ENSG00000177479 MSTRG.22928.3 + 3 48922548 48922757 210 UUAGAAGGUCAUGUAACUCUUGUCAAUAUAAUUAUGUCAUGGAUUUUUUUUGUUGGCACUUUAAAAGAAGAUAAUUAAUUUAAUAGUUACUCUGUCCCUUGUUACUUGUCCUUUAAAAUACCUUUGCUUUAAAAAAAAAAUAAACUUGCAAAAGCAGUAUACCAGCUUUAAAAAUAUAAAUAUAAUUCUUUUCAUUUUAGAUGGAAAUCA ie_up
ENSG00000177479:+:3:48922747:48927813 ENSG00000177479 MSTRG.22928.3 + 3 48927804 48928013 210 UGUCCUAAAGGUGAGCAGUGUUGUAAACUCCAGUGUAAUCCCCCCCAGUUAAAUCUAAGGAUGAGCUGUUGUUAAUUAAUGUCUCCUCCAGACUAAUUGAAUGGCCUUGUAGCUUGAAACCAAAUUUAAGUGUAUGUCAACAUCAUUUGGACAUUUUGUUACAUUUACUUUGUUUUCUAAUAUAUGCAUGUCUAAGGUCCUCAGAUUCCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 4 688 0.007462687 0.0009985015 2.901859 AAGAAG AAGAAG
RBM28 4 822 0.007462687 0.0011926949 2.645470 AGUAGA,GAGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 3 678 0.005970149 0.0009840095 2.601023 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ANKHD1 1 339 0.002985075 0.0004927293 2.598900 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SRSF4 19 3740 0.029850746 0.0054214720 2.461010 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPN1 5 1222 0.008955224 0.0017723764 2.337044 AGAAGA AAAAGA,AGAAGA
RBFOX2 1 452 0.002985075 0.0006564894 2.184923 UGCAUG UGACUG,UGCAUG
NONO 5 1498 0.008955224 0.0021723567 2.043468 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2A 25 6871 0.038805970 0.0099589296 1.962216 AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
AGO1 1 548 0.002985075 0.0007956130 1.907628 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
G3BP2 4 1644 0.007462687 0.0023839405 1.646347 AGGAUG,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRPB2 2 991 0.004477612 0.0014376103 1.639057 GUAUUG,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 2 999 0.004477612 0.0014492040 1.627469 AAGGAA,GGGGGG AAGGAA,GAAGGA,GGGGGG
ZC3H10 2 1053 0.004477612 0.0015274610 1.551594 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM3 5 2152 0.008955224 0.0031201361 1.521121 AAGACG,AAUACU,AGACGA,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBFOX1 2 1077 0.004477612 0.0015622419 1.519112 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TRA2B 18 7329 0.028358209 0.0106226650 1.416621 AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAG,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZCRB1 3 1605 0.005970149 0.0023274215 1.359034 GAAUUA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF5 21 8869 0.032835821 0.0128544391 1.353004 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA,UACAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SNRNP70 2 1237 0.004477612 0.0017941145 1.319458 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF7 33 14481 0.050746269 0.0209873716 1.273780 AAGAAG,AGAAGA,AGACGA,AGAGAU,AGAGGA,AGAUCU,AGGAAG,CUGAGA,GAAGAA,GACAAA,GACGAC,GAGAGA,GAGAUC,GAGGAA,GAUUGA,UAGAGA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
ACO1 2 1283 0.004477612 0.0018607779 1.266824 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
YTHDC1 12 5576 0.019402985 0.0080822104 1.263457 GAAUAC,GAGUAC,GAGUGC,GCAUGC,GCCUGC,GGAUGC,GGGUGC,UAAUGC,UCAUGC,UCCUGC,UGAUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
ESRP2 4 2150 0.007462687 0.0031172377 1.259427 GGGAAA,GGGGAA,GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM41 2 1318 0.004477612 0.0019115000 1.228024 AUACUU,UACUUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPAB 3 1782 0.005970149 0.0025839306 1.208200 AAGACA,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO2 3 1830 0.005970149 0.0026534924 1.169875 AAAGUG,AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPDL 18 8759 0.028358209 0.0126950266 1.159503 ACAGCA,ACUGCA,AGUAGC,AUCUGA,CUAGCU,GAGUAG,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UCUGAC,UUAGCC AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZFP36 1 126 0.09090909 0.008318051 3.450107 UAAAGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF9 1 134 0.09090909 0.008842023 3.361976 GAUGGA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 2 625 0.13636364 0.041000786 1.733736 AGAUGG,GAUGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 1 479 0.09090909 0.031438302 1.531901 GAUGGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
A1CF 11 598 0.028571429 0.0030179363 3.242939 AGUAUA,AUAAUU,CAGUAU,UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGHMBP2 5 350 0.014285714 0.0017684401 3.014024 AAAAAA AAAAAA
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 6 502 0.016666667 0.0025342604 2.717329 UACAUU,UACUUG,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA AAAAAA,AAAAAG
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAUC,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 AAAAAA,CCCCCC,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
AGO2 5 677 0.014285714 0.0034159613 2.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SYNCRIP 8 1041 0.021428571 0.0052498992 2.029174 AAAAAA,UUUUUU AAAAAA,UUUUUU
ZNF638 4 646 0.011904762 0.0032597743 1.868695 GUUGUU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 AUUUAA,AUUUAC,UAAAAA,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PPIE 66 9262 0.159523810 0.0466696896 1.773214 AAAAAA,AAAAAU,AAAAUA,AAAUAA,AAAUAU,AAAUUU,AAUAAA,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AUAAAU,AUAAUU,AUAUAA,AUAUAU,AUUAAU,AUUUAA,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUUAAA,UUUAAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC1 7 1321 0.019047619 0.0066606207 1.515882 AAAAAA,ACUAAU,CUAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 AAUAAA,AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUAUGU,GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAAUAA,AAUAAA,AGAUAA,AUAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAAAAA,AAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGUGU,ACCAAA,AGAAGG,AGUGUU,AUCCCC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
FUS 8 1711 0.021428571 0.0086255542 1.312847 AAAAAA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AAAAAA,AAUUUA,AGGAUG,AGUAUA,AGUUAA,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AGAUAA,CUUGUA,UAAAUA,UAAUAU,UAAUGU,UGUAAA,UGUAAU,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 CCCCCC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPDL 12 2689 0.030952381 0.0135530028 1.191438 AAUACC,AAUUUA,ACUUUA,AUACCA,CCAGAC,CCUUUA,CUUUAA,GUAGCU AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUAAU,AUCUAA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPK 13 3244 0.033333333 0.0163492543 1.027741 AAAAAA,CCCCCA,CCCCCC,UCCCCC,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAAAAA,AAGGUG,CCCCCC,GAAGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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