ENSG00000152127:+:2:134253094:134254644

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000152127:+:2:134253094:134254644 ENSG00000152127 MSTRG.19256.9 + 2 134253095 134254644 504 GCAAUGGGAAAACAGUAAGAGGCAGACCAACAGUGAUCCAGGGCUCUGAAAGCUAAUUGCUUCAAGAUCCUGCUACCAUUUUCUUUUGGGCCGCUUGCAAAGAAGAAUCCUUUGACUGAAGCAUAAUGGAAGUGAGGAAAGGCAACCAGCUGACACAGGAGCCAGAGUGAGACCAGCAGACUCUCACACUCAACCUACACCAUGAAUUUGUGUCUAUCUUCUACGCGUUAAGAGCCAAGGACAGGUGAAGUUGCCAGAGAGCAAUGGCUCUCUUCACUCCGUGGAAGUUGUCCUCUCAGAAGCUGGGCUUUUUCCUGGUGACUUUUGGCUUCAUUUGGGGUAUGAUGCUUCUGCACUUUACCAUCCAGCAGCGAACUCAGCCUGAAAGCAGCUCCAUGCUGCGCGAGCAGAUCCUGGACCUCAGCAAAAGGUACAUCAAGGCACUGGCAGAAGAAAACAGGAAUGUGGUGGAUGGGCCAUACGCUGGAGUCAUGACAGCUUAUGGCAAUGGGAAAACAGUAAGAGGCAGACCAACAGUGAUCCAGGGCUCUGAA circ
ENSG00000152127:+:2:134253094:134254644 ENSG00000152127 MSTRG.19256.9 + 2 134253095 134254644 22 GACAGCUUAUGGCAAUGGGAAA bsj
ENSG00000152127:+:2:134253094:134254644 ENSG00000152127 MSTRG.19256.9 + 2 134252895 134253104 210 ACAUAGCUGGCUGACCUUUGCCAAGUUAAUCACCUUUUACCUUUAUUUUCUCAUGUUUCUAAUAAAACAGAGACGAUAAUAUUCAUACUUCUUACCAUAUAGAACUUCUGAGGAUUCAGUGAGCAAAGCCACAAAAGAUGGUAUGUCACAAUAUCUGGGAUAUAGCUAGAAUUUAUAAUUUAUUUUUACUCUGUUGAUAGGCAAUGGGAA ie_up
ENSG00000152127:+:2:134253094:134254644 ENSG00000152127 MSTRG.19256.9 + 2 134254635 134254844 210 ACAGCUUAUGGUAAGCACUGUUUCUGGGACCUCUCCAUUAAAGUGUGCCUUGGCCUUGAAAUGGCCCUAGAAGCUCCCAGAUAUGGUCUUGUCAUGGACUGAAUGUCCUUUGCCACUGCCUUCAUAAGCAGUGAAUUGCACACAGAGAGGCAUCUUUAGGAAAUUAAAGCAAUGCCAUUUUGGGGGUUCUGAGCUGGUGUAUGCAGACAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.003968254 0.0001130379 5.133626 GCAUAA GCAUAA
PTBP2 1 267 0.003968254 0.0003883867 3.352939 CUCUCU CUCUCU
FXR1 1 411 0.003968254 0.0005970720 2.732527 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBFOX2 1 452 0.003968254 0.0006564894 2.595661 UGACUG UGACUG,UGCAUG
PABPC3 4 1234 0.009920635 0.0017897669 2.470661 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM6 3 1054 0.007936508 0.0015289102 2.376001 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
IFIH1 2 904 0.005952381 0.0013115296 2.182217 GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM8A 1 611 0.003968254 0.0008869128 2.161640 UGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SRSF11 1 688 0.003968254 0.0009985015 1.990668 AAGAAG AAGAAG
ZC3H10 2 1053 0.005952381 0.0015274610 1.962331 CAGCGA,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
HNRNPA3 5 2140 0.011904762 0.0031027457 1.939921 AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PABPN1 2 1222 0.005952381 0.0017723764 1.747782 AGAAGA AAAAGA,AGAAGA
SNRNP70 2 1237 0.005952381 0.0017941145 1.730195 AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
U2AF2 2 1477 0.005952381 0.0021419234 1.474560 UUUUCC,UUUUUC UUUUCC,UUUUUC,UUUUUU
SRSF4 6 3740 0.013888889 0.0054214720 1.357175 AAGAAG,AGAAGA,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBFOX1 1 1077 0.003968254 0.0015622419 1.344887 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PUM2 2 1890 0.005952381 0.0027404447 1.119057 GUACAU,UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZRANB2 4 3173 0.009920635 0.0045997733 1.108870 AAAGGU,AGGUAC,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ACO1 1 1283 0.003968254 0.0018607779 1.092599 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
SART3 3 2634 0.007936508 0.0038186524 1.055441 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 56 0.007142857 0.0002871826 4.636461 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AUAUAG,CAUAUA,UAUAGA,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAUUUA,AGAUAU,AUUUAU,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 AGACGA,CACACA,CACUGC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AGACGA,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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