ENSG00000186522:-:2:109564365:109585838

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000186522:-:2:109564365:109585838 ENSG00000186522 ENST00000397712 - 2 109564366 109585838 929 AAAAGAGAAAACAUUCGUUCGUUGACUAUGUCUGGCCAUGUUGGUUUUGAGAGUUUGCCUGAUCAGCUGGUGAACAGAUCCAUUCAGCAAGGUUUCUGCUUUAAUAUUCUCUGUGUGGGGGAAACUGGAAUUGGAAAAUCAACACUGAUUGACACAUUGUUUAAUACUAAUUUUGAAGACUAUGAAUCCUCACAUUUUUGCCCAAAUGUUAAACUUAAAGCUCAGACAUAUGAACUCCAGGAAAGUAAUGUUCAAUUGAAAUUGACCAUUGUGAAUACAGUGGGAUUUGGUGACCAAAUAAAUAAAGAAGAGAGCUACCAACCAAUAGUUGACUACAUAGAUGCUCAGUUUGAGGCCUAUCUCCAAGAAGAACUGAAGAUUAAGCGUUCUCUCUUUACCUACCAUGAUUCUCGCAUCCAUGUGUGUCUCUACUUCAUUUCACCGACAGGCCACUCUCUGAAGACACUUGAUCUCUUAACCAUGAAGAACCUUGACAGCAAGGUAAACAUUAUACCAGUGAUUGCCAAAGCAGAUACGGUUUCUAAAACUGAAUUACAGAAGUUUAAGAUCAAGCUCAUGAGUGAAUUGGUCAGCAAUGGCGUCCAGAUAUACCAGUUCCCAACGGAUGAUGACACUAUUGCUAAGGUCAACGCUGCAAUGAAUGGACAGUUGCCGUUUGCUGUUGUGGGAAGUAUGGAUGAGGUAAAAGUCGGAAACAAGAUGGUCAAAGCUCGCCAGUACCCUUGGGGUGUUGUACAAGUGGAAAAUGAAAACCACUGUGACUUUGUAAAGCUGCGGGAAAUGCUCAUUUGUACAAAUAUGGAGGACCUGCGAGAGCAGACCCAUACCAGGCACUAUGAGCUUUACAGGCGCUGCAAACUGGAGGAAAUGGGCUUUACAGAUGUGGGCCCAGAAAACAAGCCAGUCAGAAAAGAGAAAACAUUCGUUCGUUGACUAUGUCUGGCCAUGUUGGUUUUGA circ
ENSG00000186522:-:2:109564365:109585838 ENSG00000186522 ENST00000397712 - 2 109564366 109585838 22 AAGCCAGUCAGAAAAGAGAAAA bsj
ENSG00000186522:-:2:109564365:109585838 ENSG00000186522 ENST00000397712 - 2 109585829 109586038 210 UAAGAAAUGUAUGUUUUGAGGAUCUGGACACAGGUUUCUUUUCCUGAAAAUUUACUUAAUCGCUUGUAUCUUAGGUGAGGUAUAAUGAUUAUAAAAAUUUUCAUUUAUUUGAUAUAUUUGUCCUUCAAGUGUGCCUACAUCCUAUUUAAGUCAAAGUUGUUUUUUUUAUUGCUGUUGUUUUUGUUUUUAUUUUCCUUCAGAAAAGAGAAA ie_up
ENSG00000186522:-:2:109564365:109585838 ENSG00000186522 ENST00000397712 - 2 109564166 109564375 210 AGCCAGUCAGGUAGGGUGGGGUUCUUGGGAAGCCAACCAAAGAGGAAGUUAGAGAGGAUUGCAUAUUUUUAUAUAUCCAGGAUGAUGGGGCAUGUGUUCUUUAGAAUCUCCCAAAACCAUGAUAUAGAAUCAUUUGGUAAUGACUAAUUAUUGUGCUUCUUGAAUCACUUGACUCCUUCUUGCUUUUGAAGAGUCUUGCUUUUUAAGUCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 267 0.003229279 0.0003883867 3.055646 CUCUCU CUCUCU
RBMS1 2 497 0.003229279 0.0007217036 2.161734 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPC3 6 1234 0.007534984 0.0017897669 2.073833 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
AGO1 2 548 0.003229279 0.0007956130 2.021073 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
FXR1 1 411 0.002152853 0.0005970720 1.850273 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ZNF638 7 1773 0.008611410 0.0025708878 1.743983 CGUUCG,CGUUCU,GUUCGU,GUUGGU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
TUT1 2 678 0.003229279 0.0009840095 1.714468 AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA0 1 453 0.002152853 0.0006579386 1.710225 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.003229279 0.0009985015 1.693375 AAGAAG AAGAAG
CELF5 5 1415 0.006458558 0.0020520728 1.654130 GUGUGG,GUGUGU,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TARDBP 10 2654 0.011840689 0.0038476365 1.621709 GAAUGG,GUGAAU,GUGUGU,GUUGUG,GUUUUG,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBMY1A1 1 489 0.002152853 0.0007101099 1.600135 ACAAGA ACAAGA,CAAGAC
SNRNP70 4 1237 0.005382131 0.0017941145 1.584906 AAUCAA,AUCAAG,GAUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF4 6 1782 0.007534984 0.0025839306 1.544037 GGUGUU,GUGUGG,GUGUGU,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF1 8 2391 0.009687836 0.0034664959 1.482696 GUGUGU,GUGUUG,GUUGUG,UGUCUG,UGUGUG,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ZCRB1 5 1605 0.006458558 0.0023274215 1.472479 ACUUAA,GAAUUA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 7 2152 0.008611410 0.0031201361 1.464641 AAAACU,AAGACU,AAUACU,AGACUA,AUACUA,GAAACU,GAUACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CELF2 6 1886 0.007534984 0.0027346479 1.462249 AUGUGU,GUGUGU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
EIF4B 3 1179 0.004305705 0.0017100607 1.332202 GUCGGA,UCGGAA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC5 7 2400 0.008611410 0.0034795387 1.307353 AGAAAA,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPN1 3 1222 0.004305705 0.0017723764 1.280564 AAAAGA,AGAAGA AAAAGA,AGAAGA
PUM1 18 5823 0.020452099 0.0084401638 1.276906 AAUAUU,AAUGUU,CCAGAA,GAAUUG,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UGUAAA,UGUACA,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PUM2 5 1890 0.006458558 0.0027404447 1.236802 UAAAUA,UACAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CSTF2 5 1967 0.006458558 0.0028520334 1.179221 GUGUGU,GUGUUG,GUUUUG,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF6 8 2997 0.009687836 0.0043447134 1.156913 GUGGGG,GUGUGG,GUGUUG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM24 6 2357 0.007534984 0.0034172229 1.140780 GAGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBM46 12 4554 0.013993541 0.0066011240 1.083978 AAUCAA,AAUGAA,AUCAAG,AUGAAA,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUCAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ENOX1 8 3195 0.009687836 0.0046316558 1.064646 AAGACA,AAUACA,AUACAG,CAGACA,GGACAG,UGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ESRP2 5 2150 0.006458558 0.0031172377 1.050944 GGGAAA,GGGAAG,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SART3 1 12 0.09090909 0.000851454 6.738352 AGAAAA AAAAAA,AGAAAA,GAAAAA,GAAAAC
PABPC5 1 18 0.09090909 0.001244433 6.190864 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC1 1 19 0.09090909 0.001309929 6.116864 AGAAAA AAAAAA,ACAAAC,ACGAAU,AGAAAA,CAAACC,CAAAUA,CGAACA,CUAAUA,GAAAAA,GAAAAC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 4 217 0.011904762 0.0010983474 3.438132 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
AGO1 3 283 0.009523810 0.0014308746 2.734641 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SSB 6 505 0.016666667 0.0025493753 2.708750 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
NONO 4 364 0.011904762 0.0018389762 2.694564 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AUAUAG,AUAUAU,UAUAGA,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZNF638 7 646 0.019047619 0.0032597743 2.546767 GGUUCU,GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZFP36L2 7 774 0.019047619 0.0039046755 2.286336 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUG,AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM4 10 1094 0.026190476 0.0055169287 2.247105 CCUUCU,CUUCUU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
CELF2 6 881 0.016666667 0.0044437727 1.907109 AUGUGU,GUAUGU,GUUGUU,UAUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL4 22 2916 0.054761905 0.0146966949 1.897681 AUUUAU,GUAUCU,UAUUUA,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUCAU,AAUGAU,AUCAUU,AUGAUA,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAGAAA,AAGAGG,AGAGGA,AGGAAG,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL1 22 3309 0.054761905 0.0166767432 1.715335 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAUUUA,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL2 61 9826 0.147619048 0.0495112858 1.576050 AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAU,AUUUUC,AUUUUU,CUUUUU,GUUUUU,UAUAUA,UAUAUU,UAUGUU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUUU,UUAAGU,UUACUU,UUAUAU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUAAG,UUUACU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 30 5140 0.073809524 0.0259018541 1.510752 AUUUUC,AUUUUU,CUCCUU,CUUUUC,CUUUUG,CUUUUU,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 32 5597 0.078571429 0.0282043531 1.478087 AAAUUU,AAUUUU,AUUUUC,AUUUUU,CUUUUC,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUCC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
MBNL1 16 3258 0.040476190 0.0164197904 1.301638 CGCUUG,CUUGCU,GCUUGU,GCUUUU,GUGCUU,UCGCUU,UGCUGU,UGCUUC,UGCUUU,UUGCUG,UUGCUU,UUGUGC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAAG,AGGUAG,AGUUAG,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAAAGA,AAAGAG,AAGAAA,AAGAGA,AAGAGG,AGAGAA,AGAGAG,AGAGGA,CAAAGA,GAGAAA,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAAU,AAAAUU,AAAUUU,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAUAU,AUAUUU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAUUA,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAUAA,UUAUAU,UUAUUU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUU,GUUUUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
KHSRP 24 5764 0.059523810 0.0290457477 1.035140 AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,CUCCUU,GUAUGU,UAUAUU,UAUUUA,UAUUUU,UCCUUC,UGCUUC,UGUAUG,UUAUUU,UUGUAU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
HNRNPA1 26 6340 0.064285714 0.0319478033 1.008781 AAAGAG,AAGAGG,AAUUUA,AGAGGA,AGGAAG,AGUUAG,AUAGAA,AUUUAA,AUUUAU,CAAAGA,GAGGAA,GUAGGG,UAGAGA,UAGGGU,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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