ENSG00000121774:+:1:32030297:32033334

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000121774:+:1:32030297:32033334 ENSG00000121774 ENST00000307714 + 1 32030298 32033334 389 AAAUUGAGAAGAUUCAGAAAGGAGACUCAAAAAAGGAUGAUGAGGAGAAUUACUUGGAUUUAUUUUCUCAUAAGAACAUGAAACUGAAAGAGCGAGUGCUGAUACCUGUCAAGCAGUAUCCCAAGUUCAAUUUUGUGGGGAAGAUUCUUGGACCACAAGGGAAUACAAUCAAAAGACUGCAGGAAGAGACUGGUGCAAAGAUCUCUGUAUUGGGAAAGGGCUCAAUGAGAGACAAAGCCAAGGAGGAAGAGCUGCGCAAAGGUGGAGACCCCAAAUAUGCCCACUUGAAUAUGGAUCUGCAUGUCUUCAUUGAAGUCUUUGGACCCCCAUGUGAGGCUUAUGCUCUUAUGGCCCAUGCCAUGGAGGAAGUCAAGAAAUUUCUAGUACCGAAAUUGAGAAGAUUCAGAAAGGAGACUCAAAAAAGGAUGAUGAGGAGAAU circ
ENSG00000121774:+:1:32030297:32033334 ENSG00000121774 ENST00000307714 + 1 32030298 32033334 22 UUCUAGUACCGAAAUUGAGAAG bsj
ENSG00000121774:+:1:32030297:32033334 ENSG00000121774 ENST00000307714 + 1 32030098 32030307 210 UUCUUUUAUUAGAAGCAGGCUUUGGGCUUUCUAGUCAACUUCAUAUAGCUUUAGUGCUUUCAGCUAGUUUCUUUCUGAAAUUGGCACAUUUGUGUGAACUAUUUGGUUUCACUAUAUGGUAUUCCAUGUUAUUGCUUUAAGCAGACUUCAAAAUUUGCAUUUAUUUACCAGGGCAAAAAUAAAUUGUUUUUCCUAUUCAGAAAUUGAGAA ie_up
ENSG00000121774:+:1:32030297:32033334 ENSG00000121774 ENST00000307714 + 1 32033325 32033534 210 UCUAGUACCGGUAAGGAAAUCCAUAUCCUGUGUCUUCUGAGCAAAAGAGAACUGGGAUCUUAUACUGUUGUGAAGGUAGGGGUUCUUAACUAAGGUCUCUGCAUAACCUGUAUGUAUACCAAAUUCUGCACUUAUGUUCAUUUUCCUUAGGUAGUUCGUUACUUGCACCUAGUUCUCAAAGCAUUAUGCUCCAAGGCCACUCUAUCCCUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 1 452 0.005141388 0.0006564894 2.969314 UGCAUG UGACUG,UGCAUG
EIF4B 4 1179 0.012853470 0.0017100607 2.910039 CUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPAB 5 1782 0.015424165 0.0025839306 2.577553 AAAGAC,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ESRP2 6 2150 0.017994859 0.0031172377 2.529245 GGGAAA,GGGAAG,GGGAAU,GGGGAA,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC4 3 1251 0.010282776 0.0018144033 2.502663 AAAAAA,AAAAAG AAAAAA,AAAAAG
ERI1 1 632 0.005141388 0.0009173461 2.486620 UUCAGA UUCAGA,UUUCAG
ZFP36L2 3 1277 0.010282776 0.0018520827 2.473009 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA3 5 2140 0.015424165 0.0031027457 2.313575 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBFOX1 2 1077 0.007712082 0.0015622419 2.303503 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRSF4 9 3740 0.025706941 0.0054214720 2.245401 AGAAGA,AGGAAG,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ZCRB1 3 1605 0.010282776 0.0023274215 2.143425 GAAUUA,GAUUUA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 1 813 0.005141388 0.0011796520 2.123797 AAAAAA AAAAAA
PABPN1 2 1222 0.007712082 0.0017723764 2.121435 AAAAGA,AGAAGA AAAAGA,AGAAGA
SNRNP70 2 1237 0.007712082 0.0017941145 2.103848 AAUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM3 4 2152 0.012853470 0.0031201361 2.042477 AAGACU,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM41 2 1318 0.007712082 0.0019115000 2.012415 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
MSI1 5 2770 0.015424165 0.0040157442 1.941453 AGGAAG,AGGAGG,AGGUGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC5 4 2400 0.012853470 0.0034795387 1.885190 AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SNRPB2 1 991 0.005141388 0.0014376103 1.838485 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NONO 2 1498 0.007712082 0.0021723567 1.827859 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZC3H10 1 1053 0.005141388 0.0015274610 1.751022 GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SRSF10 25 13860 0.066838046 0.0200874160 1.734378 AAAAGA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAGA,AAGGAG,AAGGGA,ACAAAG,AGACAA,AGAGAC,CAAAGA,GAAAGA,GACAAA,GAGAAG,GAGACA,GAGACC,GAGAGA,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
LIN28A 7 4315 0.020565553 0.0062547643 1.717202 AGGAGA,GGAGAA,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
G3BP2 2 1644 0.007712082 0.0023839405 1.693772 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPD 4 2837 0.012853470 0.0041128408 1.643951 AAAAAA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
TRA2A 11 6871 0.030848329 0.0099589296 1.631130 AAGAAA,AGAAAG,AGAAGA,AGGAAG,GAAAGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL3 4 2867 0.012853470 0.0041563169 1.628780 AUUUAU,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF6 4 2997 0.012853470 0.0043447134 1.564825 GUGAGG,GUGGGG,UGUGAG,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
AGO2 2 1830 0.007712082 0.0026534924 1.539228 AAAAAA,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBMX 7 4925 0.020565553 0.0071387787 1.526481 AGGAAG,AUCAAA,AUCCCA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPF 15 10561 0.041131105 0.0153064921 1.426086 AAGGGA,AAGGUG,AGGAAG,AGGGAA,GAGGAA,GGAGGA,GGGAAG,GGGAAU,GGGGAA,UGGGAA,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 15 10717 0.041131105 0.0155325680 1.404933 AAGGGA,AAGGUG,AGGAAG,AGGGAA,AUUGGG,GAGGAA,GGAGGA,GGGAAG,GGGAAU,GGGGAA,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
TRA2B 9 7329 0.025706941 0.0106226650 1.275012 AAGAAC,AGAAGA,AGGAAG,AUAAGA,GAAAGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM46 5 4554 0.015424165 0.0066011240 1.224409 AAUCAA,AUCAAA,AUGAAA,AUGAUG,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPH3 9 7688 0.025706941 0.0111429292 1.206029 AAGGGA,AAGGUG,AGGGAA,AUUGGG,GGAGGA,GGGAAG,GGGAAU,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
YTHDC1 6 5576 0.017994859 0.0080822104 1.154763 GAAUAC,GACUGC,GAGUGC,UAGUAC,UGAUAC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SRSF7 17 14481 0.046272494 0.0209873716 1.140633 AAAGGA,AGAAGA,AGAGAC,AGAUCU,AGGAAG,GACAAA,GAGACU,GAGAGA,GAGGAA,UCUUCA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SYNCRIP 1 1634 0.005141388 0.0023694485 1.117607 AAAAAA AAAAAA,UUUUUU
SNRPA 8 7380 0.023136247 0.0106965744 1.113006 AGCAGU,AGGAGA,AUACCU,GAUACC,GCAGUA,UACCUG,UAUGCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
HNRNPA1 21 18070 0.056555270 0.0261885646 1.110724 AAAAAA,AAAGAG,AAGGAG,AAGGUG,AGGAAG,AUUUAU,CAAAGA,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GCCAAG,GGAGGA,UGGUGC,UUAUUU,UUUAUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
A1CF 1 1642 0.005141388 0.0023810421 1.110565 CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ELAVL4 5 5105 0.015424165 0.0073996354 1.059666 AAAAAA,AUUUAU,UAUUUU,UUAUUU,UUUAUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBM5 7 6879 0.020565553 0.0099705232 1.044489 AAAAAA,AAGGAG,AAGGUG,AGGGAA,CAAGGA,CAAGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPH2 10 9711 0.028277635 0.0140746688 1.006560 AAGGGA,AAGGUG,AGGGAA,AUUGGG,GGAGGA,GGGAAG,GGGAAU,GGGGAA,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC5 1 18 0.09090909 0.001244433 6.190864 GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
AGO1 3 283 0.009523810 0.0014308746 2.734641 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 1 191 0.004761905 0.0009673519 2.299426 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AUAUAG,CAUAUA,CUAUAU,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ZNF638 4 646 0.011904762 0.0032597743 1.868695 GGUUCU,GUUCGU,GUUCUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF2 5 881 0.014285714 0.0044437727 1.684716 GUAUGU,UAUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUUGUG,UGUGUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUUAU,UAACCU,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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