ENSG00000204469:+:6:31623731:31628239

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000204469:+:6:31623731:31628239 ENSG00000204469 MSTRG.28032.2 + 6 31623732 31628239 1650 UUGCCCCUCGCCAUGGCCUGCAGAGUCUCGGGAAAGUUGCCAUUGCCCGGCGUAUGCCACCUCCAGCCAACCUUCCAAGCCUGAAAGCCGAGAACAAAGGCAAUGACCCCAAUGUCUCACUAGUGCCAAAAGACGGAACAGGAUGGGCAAGCAAACAGGAGCAGUCCGACCCCAAGAGUUCCGAUGCCUCAACCGCUCAGCCGCCGGAAUCGCAGCCACUGCCGGCUUCACAGACGCCUGCCUCCAACCAGCCGAAACGACCCCCAGCAGCCCCCGAGAACACUCCUUUGGUUCCAAGCGGGGUAAAGUCCUGGGCACAAGCCAGCGUCACCCAUGGAGCACAUGGAGAUGGUGGAAGGGCAUCAAGCCUACUGUCACGAUUCUCUCGAGAGGAAUUUCCGACCCUGCAGGCGGCUGGCGACCAGGACAAGGCUGCCAAGGAAAGGGAGUCUGCCGAACAGUCGUCUGGGCCCGGACCAAGCCUCCGCCCCCAAAAUUCUACAACUUGGAGGGACGGAGGUGGGCGUGGCCCUGAUGAGCUGGAGGGCCCGGACUCCAAACUUCAUCAUGGUCAUGAUCCCCGGGGUGGGCUACAGCCUUCAGGCCCACCCCAGUUCCCUCCCUACCGCGGAAUGAUGCCGCCUUUCAUGUAUCCCCCAUAUCUCCCGUUCCCUCCGCCCUAUGGACCCCAGGGGCCUUACCGAUACCCCACUCCUGAUGGGCCCAGCCGUUUUCCCCGUGUGGCGGGCCCCCGAGGCUCAGGGCCACCAAUGCGCUUAGUAGAGCCUGUGGGUCGUCCCUCUAUUCUCAAAGAGGAUAAUCUCAAAGAGUUUGAUCAGUUGGAUCAGGAGAAUGAUGAUGGUUGGGCAGGGGCCCAUGAAGAGGUUGACUACACUGAAAAGCUCAAGUUCAGCGAUGAGGAAGAUGGGCGAGACUCUGAUGAGGAGGGUGCUGAGGGCCAGGAUUCCCAAUCAGCUUCUGGUGAGGAACGGCCCCCUGAAGCAGAUGGCAAAAAGGGCAACUCCCCCAACAGCGAACCGCCCACUCCUAAGACGGCCUGGGCAGAAACCUCUCGGCCUCCAGAGACAGAGCCGGGACCUCCUGCCCCAAAGCCUCCCCUACCCCCACCUCACCGGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGGACUACCCAGAUCGUGGGGGUCCUCCCUGCAAGCCCCCAGCACCUGAAGAUGAGGAUGAGGCAUGGCGGCAGCGACGAAAGCAGUCGUCAUCUGAGAUUUCCCUGGCAGUGGAGCGGGCCCGGCGACGGCGAGAAGAAGAGGAGCGGCGCAUGCAAGAAGAGCGCCGGGCAGCCUGUGCUGAGAAGCUCAAGCGACUCGAUGAAAAGUUUGGGGCACCUGACAAGCGGCUCAAAGCAGAGCCUGCUGCCCCACCUGCUGCCCCUUCUACCCCAGCUCCACCACCUGCAGUCCCUAAAGAACUCCCUGCACCUCCAGCUCCACCUCCAGCAUCAGCCCCAACACCAGAGACAGAACCUGAAGAGCCAGCACAGGCCCCUCCUGCCCAAUCUACUCCUACUCCAGGUGUGGCUGCGGCUCCCACUCUGGUGAGUGGUGGUGGCAGUACCAGUAGCACCAGCAGUGGCAGCUUCGAAGCCAGCCCAGUUGCCCCUCGCCAUGGCCUGCAGAGUCUCGGGAAAGUUGCCAUUGCCCGG circ
ENSG00000204469:+:6:31623731:31628239 ENSG00000204469 MSTRG.28032.2 + 6 31623732 31628239 22 AGCCAGCCCAGUUGCCCCUCGC bsj
ENSG00000204469:+:6:31623731:31628239 ENSG00000204469 MSTRG.28032.2 + 6 31623532 31623741 210 GCUGGGAUUGCAAAGUGUGAGCCACCACAAUCAGCGCGAUUUCAGAGAUUAUUAAGGGCAGGGGAAGGAAUCCCUUCUAAGAGAAGUUUGGAGGAAGUAGGUAAUAAAAUAUUCAACAUGUAUAAAUGUGUCCCAGGAUAGGAGGCCAUCAGAUCUCCCACAUGAGGCAUUUUCGACCCUCUCUCCGUCUUGUUCUCCAGUUGCCCCUCG ie_up
ENSG00000204469:+:6:31623731:31628239 ENSG00000204469 MSTRG.28032.2 + 6 31628230 31628439 210 GCCAGCCCAGGUAUGGAGAUGGGGAUAGGUACUACCAGAUGUCAGAUCACUGCUUCAAGGUGCUUAAAGGUGCAGGGUGGUAAGGCUGGGGAUAAAUGAAGUAGAAGGCAGUUGUUUUGGUUUAUUGGACUAUCAGUGAUAGUGUUCUAUCAUUUGUAUAUCUGAAGGAGGGAAGGUUUUGUCUGGAAUCUUAGGUUGUAGUCUAAUACC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 3 199 0.002424242 0.0002898408 3.064201 CCGCCC CCGCCC
CNOT4 2 314 0.001818182 0.0004564992 1.993812 GACAGA GACAGA
ZC3H10 8 1053 0.005454545 0.0015274610 1.836323 CAGCGA,CCAGCG,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM25 1 268 0.001212121 0.0003898359 1.636595 CGGGCA AUCGGG,CGGGCA,UCGGGC
NXF1 1 286 0.001212121 0.0004159215 1.543151 AACCUG AACCUG
NONO 8 1498 0.005454545 0.0021723567 1.328198 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPK 54 9304 0.033333333 0.0134848428 1.305627 ACCCAU,ACCCCA,ACCCCC,CCAAAC,CCAACC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,UCCCAA,UCCCAC,UCCCCC,UCCCCU,UCCCUA AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ANKHD1 1 339 0.001212121 0.0004927293 1.298667 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM8A 2 611 0.001818182 0.0008869128 1.035632 AUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
G3BP2 7 1644 0.004848485 0.0023839405 1.024186 AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
IGF2BP1 3 831 0.002424242 0.0012057377 1.007618 AGCACC,CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF2 1 479 0.09090909 0.0314383 1.531901 CCAGUU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 CAGCGC CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
G3BP2 5 490 0.014285714 0.0024738009 2.529772 AGGAUA,GGAUAA,GGAUAG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGA,AGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ESRP2 7 731 0.019047619 0.0036880290 2.368689 GGGAAG,GGGGAA,GGGGAU,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
MSI1 7 961 0.019047619 0.0048468360 1.974496 AGGAAG,AGGAGG,AGUAGG,UAGGAG,UAGGUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZNF638 4 646 0.011904762 0.0032597743 1.868695 GGUUGU,GUUGUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMX 9 1316 0.023809524 0.0066354293 1.843277 AAGGAA,AAGUGU,AGAAGG,AGGAAG,AGUGUU,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZRANB2 9 1360 0.023809524 0.0068571141 1.795865 AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAU,AGGUUU,GGUGGU,UAAAGG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
LIN28A 5 900 0.014285714 0.0045395002 1.653968 GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCCUUC,CCUUCU,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPF 18 3360 0.045238095 0.0169336961 1.417641 AAGGUG,AAUGUG,AGGAAG,AGGGAA,AGGGGA,AUGGGG,CUGGGG,GAAGGU,GAGGAA,GAUGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAGGAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM5 12 2359 0.030952381 0.0118903668 1.380257 AAGGAA,AAGGAG,AAGGUG,AGGGAA,AGGGUG,AGGUAA,GAAGGA,GAAGGU,GAGGGA,GGUGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACCACA,CACCAC,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAUAU,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 AAGGUG,AAUGUG,AGGAAG,AGGGAA,AGGGGA,CUGGGG,GAAGGU,GAGGAA,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUU,GUUUUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AAGGUG,AAUGUG,AGGGAA,AGGGGA,GGAAGG,GGAGGA,GGAGGG,GGGAAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GCUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AGAGAA,AGAGAU,AGAUCA,AGAUCU,AGGAAG,CAGAGA,GAAGGC,GAGGAA,GGAAGG,UCAACA,UCUCCG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPH2 13 3198 0.033333333 0.0161174929 1.048338 AAGGUG,AAUGUG,AGGGAA,AGGGGA,CUGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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