ENSG00000065243:+:1:88740987:88786213

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000065243:+:1:88740987:88786213 ENSG00000065243 MSTRG.1553.1 + 1 88740988 88786213 1185 GGGGAUUCCCGAAGUCUUCCGUUUUCUGAGAAUGUGAGUGCUGUUCAAAAAUUAGACUUUUCAGAUACAAUGGUGCAGCAGAAAUUGGAUGAUAUCAAGGAUCGAAUUAAGAGAGAAAUAAGGAAAGAACUGAAAAUCAAAGAAGGAGCUGAAAAUCUGAGGAAAGUCACAACAGAUAAAAAAAGUUUGGCUUAUGUAGACAACAUUUUGAAAAAAUCAAAUAAAAAAUUAGAAGAACUACAUCACAAGCUGCAGGAAUUAAAUGCACAUAUUGUUGUAUCAGAUCCAGAAGAUAUUACAGAUUGCCCAAGGACUCCAGAUACUCCAAAUAAUGACCCUCGUUGUUCUACUAGCAACAAUAGAUUGAAGGCCUUACAAAAACAAUUGGAUAUAGAACUUAAAGUAAAACAAGGUGCAGAGAAUAUGAUACAGAUGUAUUCAAAUGGAUCUUCAAAGGAUCGGAAACUCCAUGGUACAGCUCAGCAACUGCUCCAGGACAGCAAGACAAAAAUAGAAGUCAUACGAAUGCAGAUUCUUCAGGCAGUCCAGACUAAUGAAUUGGCUUUUGAUAAUGCAAAACCUGUGAUAAGUCCUCUUGAACUUCGGAUGGAAGAAUUAAGGCAUCAUUUUAGGAUAGAGUUUGCAGUAGCAGAAGGUGCAAAGAAUGUAAUGAAAUUACUUGGCUCAGGAAAAGUAACAGACAGAAAAGCACUUUCAGAAGCUCAAGCAAGAUUUAAUGAAUCAAGUCAGAAGUUGGACCUUUUAAAGUAUUCAUUAGAGCAAAGAUUAAACGAAGUCCCCAAGAAUCAUCCCAAAAGCAGGAUUAUUAUUGAAGAACUUUCACUUGUUGCUGCAUCACCAACACUAAGUCCACGUCAAAGUAUGAUAUCUACGCAAAAUCAAUAUAGUACACUAUCCAAACCAGCAGCACUAACAGGUACUUUGGAAGUUCGUCUUAUGGGCUGCCAAGAUAUCCUAGAGAAUGUCCCUGGACGGUCAAAAGCAACAUCAGUUGCACUGCCUGGUUGGAGUCCAAGUGAAACCAGAUCAUCUUUCAUGAGCAGAACGAGUAAAAAUGAUGUCUGUGCUGUUUUGAAGCUCGAUAAUACUGUGGUUGGCCAAACUAGCUGGAAACCCAUUUCCAAUCAGUCAUGGGACCAGAAGUUUACACUGGAACUGGACAGGGGGGAUUCCCGAAGUCUUCCGUUUUCUGAGAAUGUGAGUGCUGUUCAAAA circ
ENSG00000065243:+:1:88740987:88786213 ENSG00000065243 MSTRG.1553.1 + 1 88740988 88786213 22 AACUGGACAGGGGGGAUUCCCG bsj
ENSG00000065243:+:1:88740987:88786213 ENSG00000065243 MSTRG.1553.1 + 1 88740788 88740997 210 AGUGAGUUCUUGAAUUUAUGAUUUUGUAUGGUUAUAAUAAAAGUCAGUAAGUAGUUGGUCUAUUGCUUAUUAAGGAGAUAAUUAAAUAUAGUUAAAUGUAAUGUAAUCAAGAAAGACUCUCUUAGGCUGAAAACACUGCAUAUUUACUGAGCAGCCAACUCUCCUAAACUCCCACAUUUGUAUGUUUAUUUUUUCUGUAGGGGGAUUCCC ie_up
ENSG00000065243:+:1:88740987:88786213 ENSG00000065243 MSTRG.1553.1 + 1 88786204 88786413 210 ACUGGACAGGGUAAGAGGACUAACAUUUUACUUGAAUUUUAAUUAUAAUUCAUUUUAAAUGUGAGUUAUAUUUUUUAGAAGGCUUCAACAAGUUGUAUUCUUAACAAGAAUAAAAAUAGAACUUAGAUUUUUUUUUUACAUUUCUUAUUCAAUGAGUUAUGCAUAAAUCUACCUUAAUAUAGAGAUGAAUAUCAGAUUGCUGUAGGAUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 12 1605 0.010970464 0.0023274215 2.236820 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GAUUAA,GAUUUA,GGAUUA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBMS1 3 497 0.003375527 0.0007217036 2.225635 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 4 632 0.004219409 0.0009173461 2.201503 UUCAGA,UUUCAG UUCAGA,UUUCAG
TUT1 4 678 0.004219409 0.0009840095 2.100297 AAUACU,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM42 2 407 0.002531646 0.0005912752 2.098174 AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
SNRNP70 8 1237 0.007594937 0.0017941145 2.081766 AAUCAA,AUCAAG,AUUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
NXF1 1 286 0.001687764 0.0004159215 2.020730 AACCUG AACCUG
HNRNPA0 2 453 0.002531646 0.0006579386 1.944051 AGAUAU AAUUUA,AGAUAU,AGUAGG
CNOT4 1 314 0.001687764 0.0004564992 1.886429 GACAGA GACAGA
IGHMBP2 4 813 0.004219409 0.0011796520 1.838680 AAAAAA AAAAAA
SSB 6 1260 0.005907173 0.0018274462 1.692639 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM46 24 4554 0.021097046 0.0066011240 1.676257 AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUU,AUGAAA,AUGAAU,AUGAUA,AUGAUG,GAUCAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
EIF4B 5 1179 0.005063291 0.0017100607 1.566028 GUUGGA,UCGGAA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC4 5 1251 0.005063291 0.0018144033 1.480580 AAAAAA,AAAAAG AAAAAA,AAAAAG
ZNF638 7 1773 0.006751055 0.0025708878 1.392846 CGUUGU,GGUUGG,GUUCGU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 7 1782 0.006751055 0.0025839306 1.385546 AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO2 7 1830 0.006751055 0.0026534924 1.347221 AAAAAA,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
G3BP2 6 1644 0.005907173 0.0023839405 1.309120 AGGAUA,AGGAUU,GGAUAG,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBMY1A1 1 489 0.001687764 0.0007101099 1.248999 CAAGAC ACAAGA,CAAGAC
YBX2 5 1480 0.005063291 0.0021462711 1.238243 AACAUC,ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC3 4 1234 0.004219409 0.0017897669 1.237269 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPM 3 999 0.003375527 0.0014492040 1.219852 AAGGAA,GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
QKI 10 2805 0.009282700 0.0040664663 1.190769 AAUCAU,ACACUA,ACUAAC,ACUAAU,AUCUAC,CACUAA,CUAACA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBMS3 4 1283 0.004219409 0.0018607779 1.181135 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TRA2B 27 7329 0.023628692 0.0106226650 1.153394 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,GAAAGA,GAAGAA,GAAGGA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM6 3 1054 0.003375527 0.0015289102 1.142609 AUCCAA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
KHDRBS3 12 3429 0.010970464 0.0049707696 1.142083 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUUAAA,GAUAAA,UAAAAC,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ENOX1 11 3195 0.010126582 0.0046316558 1.128547 AAGACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,GGACAG,GUACAG,UAGACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC5 8 2400 0.007594937 0.0034795387 1.126142 AGAAAA,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM3 7 2152 0.006751055 0.0031201361 1.113504 AAACGA,AAACUA,AAUACU,AGACUA,AUACGA,GAAACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPU 1 2 0.09090909 0.0001964894 8.853829 GGGGGG AAAAAA
HNRNPC 1 5 0.09090909 0.0003929788 7.853829 GGGGGG GGAUAU,GGAUUC,GGGUAC
HNRNPM 1 5 0.09090909 0.0003929788 7.853829 GGGGGG AAGGAA,GAAGGA
NOVA1 1 5 0.09090909 0.0003929788 7.853829 GGGGGG ACCACC,CAGUCA,CAUUCA,UCAGUC
FUS 1 11 0.09090909 0.0007859576 6.853829 GGGGGG AAAAAA,CGGUGG,GGGUGA,GGGUGG,GGGUGU
NOVA2 1 15 0.09090909 0.0010479434 6.438792 GGGGGG ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
HNRNPK 1 16 0.09090909 0.0011134399 6.351329 GGGGGG AAAAAA,ACCCCA,ACCCCC,ACCCGA,CAAACC,CAUACC,CCAACC,CCAUAC,CCCCAC,CCCCCU,CCCCUU,GCCCAC,GCCCAG,UCCCAC
PCBP2 1 26 0.09090909 0.0017684045 5.683904 GGGGGG AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG
PTBP1 1 30 0.09090909 0.0020303904 5.484596 GGGGGG AGCUGU,CAUCUU,CCAUCU,CCUCUU,CUAUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUUCU,GGCUCC,GUCUUU,UACUUU,UAUUUU,UCCUCU,UCUAUC,UCUCUU,UCUUCU,UCUUUC,UUACUU,UUCUUC,UUCUUG,UUUCUU
PCBP1 1 35 0.09090909 0.0023578727 5.268867 GGGGGG AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 GGGGGG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
HNRNPH2 2 80 0.13636364 0.0053052135 4.683904 GGGGGA,GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
RBM5 1 56 0.09090909 0.0037332984 4.605902 GGGGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPH3 1 61 0.09090909 0.0040607807 4.484596 GGGGGG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
SFPQ 3 153 0.18181818 0.0100864553 4.172005 AGGGGG,GGGGGA,GGGGGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPF 1 90 0.09090909 0.0059601782 3.930997 GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
FMR1 1 117 0.09090909 0.0077285827 3.556149 GGGGGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF1 3 625 0.18181818 0.0410007860 2.148773 ACAGGG,GGGGGA,GGGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
SNRNP70 3 253 0.009523810 0.0012797259 2.895704 AAUCAA,AUCAAG,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 2 218 0.007142857 0.0011033857 2.694564 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGU,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
A1CF 6 598 0.016666667 0.0030179363 2.465331 AUAAUU,UAAUUA,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CPEB4 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
KHDRBS2 11 1051 0.028571429 0.0053002821 2.430432 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACAUU,UACUUG,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
KHDRBS1 18 1945 0.045238095 0.0098045143 2.206020 AUAAAA,AUUUAC,GAAAAC,UAAAAA,UAAAAG,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 AAUAAA,AGAUAA,AUAAAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL3 16 1928 0.040476190 0.0097188634 2.058214 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
U2AF2 8 1071 0.021428571 0.0054010480 1.988224 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 8 1117 0.021428571 0.0056328094 1.927609 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 UUUUUU AAAAAA,UUUUUU
HNRNPC 14 2006 0.035714286 0.0101118501 1.820454 AUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PPIE 65 9262 0.157142857 0.0466696896 1.751519 AAAAAU,AAAAUA,AAAUAU,AAUAAA,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUUU,AUUAAA,AUUAUA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAUAA,UAAUAU,UAAUUA,UAUAAU,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUUCAU,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ELAVL2 54 9826 0.130952381 0.0495112858 1.403213 AAUUUA,AAUUUU,AUAUUU,AUUUAC,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CAUUUU,GAUUUU,UAGUUA,UAUAUU,UAUGUU,UAUUUA,UAUUUU,UCAUUU,UCUUAU,UGAUUU,UGUAUU,UUAAUU,UUACUU,UUAUAU,UUAUUU,UUCAUU,UUGUAU,UUUAAU,UUUACU,UUUAUG,UUUAUU,UUUCUU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAC,AUCUAC,CUAACA,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAA,AUCAAG,AUGAAU,AUGAUU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACUAAC,AGUAAG,CUAACA,GACUAA,UAACAA,UACUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAAA,AAGAGG,AGAAAG,AGAGGA,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGUAAG,AGUUGG,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
TIAL1 28 5597 0.069047619 0.0282043531 1.291674 AAUUUU,AUUUUA,AUUUUG,AUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 7 1711 0.019047619 0.0086255542 1.142922 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAUUUA,UAUUUU,UGAUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAUUUA,AGUAAG,AGUUAA,UAGGAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,AUUUUU,UAUUUU,UCUCCU,UUAUUU,UUUAUU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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