ENSG00000136021:+:12:100312431:100317925

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000136021:+:12:100312431:100317925 ENSG00000136021 ENST00000360820 + 12 100312432 100317925 765 CCUAAAUUUCCUUGUAAAGAAUGGGACCCAAAUUUACCUUCAUUGUGUCUUCCAAAUCCUGAAUAUUUGGCUCCUGAAUACAUACUUUCUGUGAGCUGUGAAACAGCCAGUGAUAUGUAUUCUUUAGGAACUGUUAUGUAUGCUGUAUUUAAUAAAGGGAAACCUAUAUUUGAAGUCAACAAGCAAGAUAUUUACAAGAGUUUCAGUAGGCAGUUGGAUCAGUUGAGUCGUUUAGGAUCUAGUUCACUUACAAAUAUACCUGAGGAAGUUCGUGAACAUGUAAAGCUACUGUUAAAUGUAACUCCGACUGUAAGACCAGAUGCAGAUCAAAUGACAAAGAUUCCCUUCUUUGAUGAUGUUGGUGCAGUAACACUGCAAUAUUUUGAUACCUUAUUCCAAAGAGAUAAUCUUCAGAAAUCACAGUUUUUCAAAGGACUGCCAAAGGUUCUACCAAAACUGCCCAAGCGUGUCAUUGUGCAGAGAAUUUUGCCUUGUUUGACUUCAGAAUUUGUAAACCCUGACAUGGUACCUUUUGUUUUGCCCAAUGUUCUACUUAUUGCUGAGGAAUGCACCAAAGAAGAAUAUGUCAAAUUAAUUCUUCCUGAACUUGGCCCUGUGUUUAAGCAGCAGGAGCCAAUCCAGAUUUUGUUAAUUUUCCUACAAAAAAUGGAUUUGCUACUAACCAAAACCCCUCCUGAUGAGAUAAAGAACAGUGUUCUACCCAUGGUUUACAGAGCACUAGAAGCUCCUUCCAUUCAGAUCCAGCCUAAAUUUCCUUGUAAAGAAUGGGACCCAAAUUUACCUUCAUUGUGUCU circ
ENSG00000136021:+:12:100312431:100317925 ENSG00000136021 ENST00000360820 + 12 100312432 100317925 22 UUCAGAUCCAGCCUAAAUUUCC bsj
ENSG00000136021:+:12:100312431:100317925 ENSG00000136021 ENST00000360820 + 12 100312232 100312441 210 AAUCUCAGUUGUAACGGUUCUUAUUUCUCAUUUUGUUGCAUGGACUUUUUUACAUUUGGGAAUUUGGGAAUUUUGGGAUUGAAGGCGUGAUGGCAUUUUUACUUGCAUGACCGAGUAGAAAUUUAAAGAUAGAUUACUACUGCUUGAUAGUUGUUUGGUUGAAUUUGAAGUAACCCAUGUAAUUCCUUUUCUUACUACAGCCUAAAUUUC ie_up
ENSG00000136021:+:12:100312431:100317925 ENSG00000136021 ENST00000360820 + 12 100317916 100318125 210 UCAGAUCCAGGUACAGUAUCUGAUUUGUUUUUCUUUAAUGAUGAUUUUGAUUCUUAAAGCAGAAGAAGAGGUAUAAAGUACAUUUUGGAUUUAAGUCAUAAAAUACAUAACUCAAUAGUAAAUAUAUUUAUCUUUUGAAUCACAUUAUUGAUAUACUGUAACUAAAAUAUAUUCACUCCUAACUAAUUUAAAGAAUCAGUGUAUUGUAAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 3 453 0.005228758 0.0006579386 2.990443 AAUUUA,AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
ERI1 4 632 0.006535948 0.0009173461 2.832858 UUCAGA,UUUCAG UUCAGA,UUUCAG
FXR1 1 411 0.002614379 0.0005970720 2.130491 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 489 0.002614379 0.0007101099 1.880354 ACAAGA ACAAGA,CAAGAC
RBMS1 1 497 0.002614379 0.0007217036 1.856990 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZNF638 6 1773 0.009150327 0.0025708878 1.831557 GGUUCU,GUUCGU,GUUGGU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM6 3 1054 0.005228758 0.0015289102 1.773965 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
A1CF 5 1642 0.007843137 0.0023810421 1.719838 AUCAGU,GAUCAG,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPAB 5 1782 0.007843137 0.0025839306 1.601863 ACAAAG,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RC3H1 5 1786 0.007843137 0.0025897275 1.598631 CCCUUC,CCUUCU,UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPD 8 2837 0.011764706 0.0041128408 1.516258 AAAAAA,AAUUUA,AGAUAU,AGUAGG,UAUUUA,UUAGGA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZCRB1 4 1605 0.006535948 0.0023274215 1.489664 AAUUAA,AUUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CSTF2 5 1967 0.007843137 0.0028520334 1.459440 GUGUUU,GUUUUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM41 3 1318 0.005228758 0.0019115000 1.451763 AUACAU,AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRPB2 2 991 0.003921569 0.0014376103 1.447758 UAUUGC,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SRSF11 1 688 0.002614379 0.0009985015 1.388632 AAGAAG AAGAAG
MATR3 1 739 0.002614379 0.0010724109 1.285611 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
NONO 3 1498 0.005228758 0.0021723567 1.267207 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PUM2 4 1890 0.006535948 0.0027404447 1.253986 UACAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 14 5823 0.019607843 0.0084401638 1.216088 AAUAUU,AAUGUU,AGAAUU,AGAUAA,CAGAAU,CUUGUA,UACAUA,UGUAAA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SNRPA 18 7380 0.024836601 0.0106965744 1.215319 AGUAGG,AUACCU,AUGCAC,AUGCUG,CAGUAG,GAUACC,GAUUCC,GCAGUA,GUAGGC,GUAUGC,UACCUG,UAUGCU,UGCACC,UUACCU,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
IGHMBP2 1 813 0.002614379 0.0011796520 1.148107 AAAAAA AAAAAA
RBM28 1 822 0.002614379 0.0011926949 1.132243 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SSB 2 1260 0.003921569 0.0018274462 1.101602 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZFP36L2 2 1277 0.003921569 0.0018520827 1.082282 UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
ACO1 2 1283 0.003921569 0.0018607779 1.075525 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 2 1283 0.003921569 0.0018607779 1.075525 AAUAUA,CUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM4 6 3065 0.009150327 0.0044432593 1.042205 CCUUCC,CCUUCU,CUUCCU,CUUCUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ELAVL2 41 18468 0.054901961 0.0267653478 1.036491 AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUUAA,AUUUAC,AUUUUC,AUUUUG,CUUUCU,GAUUUU,GUUUUU,UAAUUU,UACUUU,UAUAUU,UAUUUA,UAUUUG,UAUUUU,UGUAUU,UUAAUU,UUAUGU,UUAUUG,UUCAUU,UUCUUU,UUUAAG,UUUAAU,UUUGAU,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 5 2654 0.007843137 0.0038476365 1.027458 GAAUGG,GUUUUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBMX 10 4925 0.014379085 0.0071387787 1.010223 AAGAAG,ACCAAA,AGGAAG,AGUAAC,AGUGUU,AUCAAA,GUAACA,UAAGAC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YBX1 1 19 0.09090909 0.001309929 6.116864 UCCAGC AACCAC,ACACCA,ACAUCU,ACCACC,CACCAC,CAGCAA,CCACCA,CCAGCA,CCUGCG,CUGCGG,GAUCUG,GCCUGC,UCCAGC,UGCGGU
KHSRP 1 35 0.09090909 0.002357873 5.268867 CAGCCU ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
SRSF2 2 479 0.13636364 0.031438302 2.116864 CCAGCC,UCCAGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 CCAGCC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGCAUG UGACUG,UGCAUG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AGAAGA AAAAGA,AGAAGA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 6 502 0.016666667 0.0025342604 2.717329 AUACAU,UACAUU,UACUUG,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU AUAUAU,UAUAUA
RBM6 1 191 0.004761905 0.0009673519 2.299426 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAG,AAGAGG,AGAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,GUACAU,UAAAUA,UACAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUCU,GUUCUU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
ELAVL2 54 9826 0.130952381 0.0495112858 1.403213 AAUUUA,AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUU,UAAUUU,UAUACU,UAUAUU,UAUUGA,UAUUGU,UAUUUA,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUACUU,UUAUUG,UUAUUU,UUCUUU,UUGAUU,UUUAAG,UUUAAU,UUUACU,UUUCUU,UUUGAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAUACA,AGUACA,GUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUAAAA,AUUUAA,CUAAAA,CUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AAGAAG,AGAAGA,AUAAAG,GAAGAA,UACAGC,UACAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAG,AAGAAU,AGAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PUM1 9 2172 0.023809524 0.0109482064 1.120844 ACAUAA,AUUGUA,GUAAAU,GUACAU,UAAAUA,UACAUA,UGUAAU,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAU,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAUUUA,UGAUUU,UGUUUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUGGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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