ENSG00000180198_ENSG00000180098:+:1:28529857:28553737

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000180198_ENSG00000180098:+:1:28529857:28553737 ENSG00000180198_ENSG00000180098 MSTRG.692.8 + 1 28529858 28553737 2110 GACAGGAAGAUGUCACCCAAGCGCAUAGCUAAAAGAAGGUCCCCCCCAGCAGAUGCCAUCCCCAAAAGCAAGAAGGUGAAGGUCUCACACAGGUCCCACAGCACAGAACCCGGCUUGGUGCUGACACUAGGCCAGGGCGACGUGGGCCAGCUGGGGCUGGGUGAGAAUGUGAUGGAGAGGAAGAAGCCGGCCCUGGUAUCCAUUCCGGAGGAUGUUGUGCAGGCUGAGGCUGGGGGCAUGCACACCGUGUGUCUAAGCAAAAGUGGCCAGGUCUAUUCCUUCGGCUGCAAUGAUGAGGGUGCCCUGGGAAGGGACACAUCAGUGGAGGGCUCGGAGAUGGUCCCUGGGAAAGUGGAGCUGCAAGAGAAGGUGGUACAGGUGUCAGCAGGAGACAGUCACACAGCAGCCCUCACCGAUGAUGGCCGUGUCUUCCUCUGGGGCUCCUUCCGGGACAAUAACGGUGUGAUUGGACUGUUGGAGCCCAUGAAGAAGAGCAUGGUGCCUGUGCAGGUGCAGCUGGAUGUGCCUGUGGUAAAGGUGGCCUCAGGAAACGACCACUUGGUGAUGCUGACAGCUGAUGGUGACCUCUACACCUUGGGCUGCGGGGAACAGGGCCAGCUAGGCCGUGUGCCUGAGUUAUUUGCCAACCGUGGUGGCCGGCAAGGCCUCGAACGACUCCUGGUCCCCAAGUGUGUGAUGCUGAAAUCCAGGGGAAGCCGGGGCCACGUGAGAUUCCAGGAUGCCUUUUGUGGUGCCUAUUUCACCUUUGCCAUCUCCCAUGAGGGCCACGUGUACGGCUUCGGCCUCUCCAACUACCAUCAGCUUGGAACUCCGGGCACAGAAUCUUGCUUCAUACCCCAGAACCUAACAUCCUUCAAGAAUUCCACCAAGUCCUGGGUGGGCUUCUCUGGUGGCCAGCACCAUACAGUCUGCAUGGAUUCGGAAGGAAAAGCAUACAGCCUGGGCCGGGCUGAGUAUGGGCGGCUGGGCCUUGGAGAGGGUGCUGAGGAGAAGAGCAUACCCACCCUCAUCUCCAGGCUGCCUGCUGUCUCCUCGGUGGCUUGUGGGGCCUCUGUGGGGUAUGCUGUGACCAAGGAUGGUCGUGUUUUCGCCUGGGGCAUGGGCACCAACUACCAGCUGGGCACAGGGCAGGAUGAGGACGCCUGGAGCCCUGUGGAGAUGAUGGGCAAACAGCUGGAGAACCGUGUGGUCUUAUCUGUGUCCAGCGGGGGCCAGCAUACAGUCUUAUUAGUCAAGGACAAAGAACAGAGCUGAUGAAGCCUCUGAGGGCCUGGCUUCUGUCCUGCACAACCUCCCUCACAGAACAGGGAAGCAGUGACAGCUGCAGAUGGCAGCGGGCCUCUCCCCAGCCCUGAGCACUGUGUCAGUUCCUGCCUUUUCUCAUCAGCAGAACAGAAUCCUUUUCCUCUUUUCCUUCCUCCUCUUUGGAAUUUUCCUGGGACCUACAGAAUAAAGGGGGGGAUGGACAGGGGGUUUUCAAAAGGAACAUGGCUCACUCAGAGCUAUAUGGUUAGACGUUUCUCCCCUUUUCCCUACCUUCCAUGGUCCUGGUUGGCCCUGGCUUUGCCUACUAGAAAACCAAAACUUCCCCCCUGGGGUUUUGUGCCCACUCUCUGAGAAGUUGGGGCUCCAUCAAGCCCCAUUCUAGUCAUGUGCCCCUUUCCUGUCCCUAACAGUCCACAGGCAAACAAAUGGUACAGUCAUAAGAGCCAUCUGUCACGGACCCACGCCCAGAGGAACGUGCAGAAAAAAGCAGAGCUACAUGGCUGUGGGCAACUAUAAGCCAAAUAUUUGGCUCAGAACAGGUGUCCAUGGGACAAAAAAGAACGAUCCUCCACUUGACCAAGAAAAAAGUGAUUCUCCCAGAAGCACAAAGCAUACUCUUGCCCCUCAGGUGUUGCUUGUGUACAUCGUACCCAUCCAUUCGGCUUCACCUGCAGCCAACGGCCUGGAAUCGCAAAGAGACACCACUCUGGGCAGAGCAGAGCAGGCUGGAACCCUACAUGGAUGAGAACUUCAUCUCCAGAGCCUUUGCCACCAUGGGGGAGACCGUAAUGAGCGUCAAAAUUAUCCGAAACCGCCUCACUGGGACAGGAAGAUGUCACCCAAGCGCAUAGCUAAAAGAAGGUCCCCCCCAGC circ
ENSG00000180198_ENSG00000180098:+:1:28529857:28553737 ENSG00000180198_ENSG00000180098 MSTRG.692.8 + 1 28529858 28553737 22 CGCCUCACUGGGACAGGAAGAU bsj
ENSG00000180198_ENSG00000180098:+:1:28529857:28553737 ENSG00000180198_ENSG00000180098 MSTRG.692.8 + 1 28529658 28529867 210 GUUAUGAAGGAUACAGUAGAGAAUAUUUGUGUAAUUAAUCUGUGGGUGCAUCCAUUAUUCUGUUCUUGGGAUACAUUUUGAGAAGUGGAAUUGUUGGGCAAUUCCUCUUAACGUAUUUCUAGAGUGUUUGAUAAAUAUUGUCUGAUUGGCCCAGGAAAAUGUUUGCCAUUUCUCAUAUGUAGUAUUUGACUGACUUUCAGGACAGGAAGA ie_up
ENSG00000180198_ENSG00000180098:+:1:28529857:28553737 ENSG00000180198_ENSG00000180098 MSTRG.692.8 + 1 28553728 28553937 210 GCCUCACUGGGUAAGUCUCAUCUCAGGUCUCUCUUAAUACAUCUCGUUGCAGCUGUCAUGUACGAGAAUGUAAACAUCGUAGUCAUGGCUUCUCACUACCCCUAGUAAUAGUCACUGUAAAAUUAUAACAGCUAACAUUUUGAGGUCCCAAUGAGUGGAAGGAUGGCAUGUAGCUUAAGGGUAGGACUUGCCAGGCGUUGUGACUCACAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 339 0.0014218009 0.0004927293 1.528852 AGACGU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
EIF4B 8 1179 0.0042654028 0.0017100607 1.318634 CUCGGA,CUUGGA,GUUGGA,UCGGAA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PTBP2 1 267 0.0009478673 0.0003883867 1.287191 CUCUCU CUCUCU
RBM25 1 268 0.0009478673 0.0003898359 1.281818 CGGGCA AUCGGG,CGGGCA,UCGGGC
RBM42 2 407 0.0014218009 0.0005912752 1.265818 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 4 688 0.0023696682 0.0009985015 1.246849 AAGAAG AAGAAG
CELF6 19 2997 0.0094786730 0.0043447134 1.125424 GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAU,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ENOX1 1 26 0.09090909 0.001768405 5.683904 GGACAG AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,UAGACA,UGGACA
FXR2 1 29 0.09090909 0.001964894 5.531901 GGACAG AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
FMR1 2 117 0.13636364 0.007728583 4.141111 ACUGGG,GGACAG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SFPQ 2 153 0.13636364 0.010086455 3.756968 ACUGGG,CUGGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF9 1 134 0.09090909 0.008842023 3.361976 GGACAG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGACAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
YBX2 3 263 0.009523810 0.0013301088 2.839994 AACAUC,ACAUCG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GAAGGA AAGGAA,GAAGGA,GGGGGG
AGO1 2 283 0.007142857 0.0014308746 2.319604 GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM6 1 191 0.004761905 0.0009673519 2.299426 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,AGGAUG,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZNF638 4 646 0.011904762 0.0032597743 1.868695 CGUUGU,GUUCUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AAUACA,AGGACA,AUACAG,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 4 764 0.011904762 0.0038542926 1.627001 UAAAUA,UACAUC,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
NELFE 5 1059 0.014285714 0.0053405885 1.419503 CUCUCU,GCUAAC,GGUCUC,GUCUCU,UCUCUC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,GAGUGG,GAGUGU,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUAUU,AAUGUU,AAUUGU,GAAUUG,GUAAUA,UAAAUA,UACAUC,UGUAAA,UGUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CELF1 5 1097 0.014285714 0.0055320435 1.368689 GUUGUG,UGUCUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AGGAAG,AGUGUU,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AACAGC,AGGAAG,GGAAGA,UACAUC,UGCAGC,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
QKI 3 904 0.009523810 0.0045596534 1.062615 CUAACA,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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