ENSG00000033170:+:14:65455620:65629606

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000033170:+:14:65455620:65629606 ENSG00000033170 ENST00000360689 + 14 65455621 65629606 922 GUUGCUGCUUUUGCUCAGAGGACAUCCAUGACCCUAAUGGUCUUUUUGUUCAAGAUAAAGUGAUUUUUUGCCUUUGUUGAUUAACUGGACAAAUUCAGCAUGUAGAGCGCAUGAAGUACAGGACAAUAAAGCUUCCUACACAUAUCACCAGGAGGAUCUCUUUGAAAGAUUCACUGCAGGACUACCAGAGAGAAUAAUUUGUCUGAAGCAUCAUGUGUUGAAACAACAGAAGUCUAUUCACCUGUGCACUAACUAGAAACAGAGUUACAAUGUUUUCAAUUCUUUGAGCUCCAGGACUCCAGGGAAGUGAGUUGAAAAUCUGAAAAUGCGGCCAUGGACUGGUUCCUGGCGUUGGAUUAUGCUCAUUCUUUUUGCCUGGGGGACCUUGCUGUUUUAUAUAGGUGGUCACUUGGUACGAGAUAAUGACCAUCCUGAUCACUCUAGCCGAGAACUGUCCAAGAUUCUGGCAAAGCUUGAACGCUUAAAACAACAGAAUGAAGACUUGAGGCGAAUGGCCGAAUCUCUCCGGAUACCAGAAGGCCCUAUUGAUCAGGGGCCAGCUAUAGGAAGAGUACGCGUUUUAGAAGAGCAGCUUGUUAAGGCCAAAGAACAGAUUGAAAAUUACAAGAAACAGACCAGAAAUGGUCUGGGGAAGGAUCAUGAAAUCCUGAGGAGGAGGAUUGAAAAUGGAGCUAAAGAGCUCUGGUUUUUCCUACAGAGUGAAUUGAAGAAAUUAAAGAACUUAGAAGGAAAUGAACUCCAAAGACAUGCAGAUGAAUUUCUUUUGGAUUUAGGACAUCAUGAAAGGUCUAUAAUGACGGAUCUAUACUACCUCAGUCAGACAGAUGGAGCAGGUGAUUGGCGGGAAAAAGAGGCCAAAGAUCUGACAGAACUGGUUCAGCGGAGAAUAACAUAUCUUCAGGUUGCUGCUUUUGCUCAGAGGACAUCCAUGACCCUAAUGGUCUUUUUGUU circ
ENSG00000033170:+:14:65455620:65629606 ENSG00000033170 ENST00000360689 + 14 65455621 65629606 22 CAUAUCUUCAGGUUGCUGCUUU bsj
ENSG00000033170:+:14:65455620:65629606 ENSG00000033170 ENST00000360689 + 14 65455421 65455630 210 GGUAUAAUUUGCAAAAUGAAAACCCAUUUUUUGUUGACAUUUGGAAAGUGCUUACAGAAUAAGUCAGUGUACAAAAUAAGUGAAUUUGCAUGUUAUGACUGGCUACAUAAAGAAAAGUUAAAGGUAUUUAAAAAAUUAUAUAAUAAUGCUAACUGAAGCUUGAGUAGGGCUGAAUUUCAUAUAUUUUUAUUUUGUUUCAGGUUGCUGCUU ie_up
ENSG00000033170:+:14:65455620:65629606 ENSG00000033170 ENST00000360689 + 14 65629597 65629806 210 AUAUCUUCAGGUAAGAAGGUUGGGUUAAGAAUAAAUUUGAGUGAAAAAAAGAAGGAUCAUAAUAUAACUAAGAGUAAUAAUUUCAGUUGUUUUUAGUCUUCCUGGCCCUUGAAAAUCAGUACUCACACAUUUUACAUAUUUAUUCAGAAAGACACUGUGUUAUGCCUUGAGUGGAAUACAAAGAUGGCUAAAACAAAGACCCUGUCCUAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 2 314 0.003253796 0.0004564992 2.833439 GACAGA GACAGA
RBMS1 2 497 0.003253796 0.0007217036 2.172646 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
FXR1 1 411 0.002169197 0.0005970720 1.861184 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
SSB 5 1260 0.006507592 0.0018274462 1.832295 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
AKAP1 1 426 0.002169197 0.0006188101 1.809593 UAUAUA AUAUAU,UAUAUA
RBMY1A1 1 489 0.002169197 0.0007101099 1.611047 ACAAGA ACAAGA,CAAGAC
YBX2 5 1480 0.006507592 0.0021462711 1.600292 AACAAC,ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPM 3 999 0.004338395 0.0014492040 1.581901 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPAB 6 1782 0.007592191 0.0025839306 1.554949 AAAGAC,AAGACA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPCL1 7 2062 0.008676790 0.0029897078 1.537157 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 5 1553 0.006507592 0.0022520629 1.530877 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZCRB1 5 1605 0.006507592 0.0023274215 1.483391 AAUUAA,GAUUAA,GAUUUA,GCUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX1 3 1077 0.004338395 0.0015622419 1.473544 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC5 7 2400 0.008676790 0.0034795387 1.318265 AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ENOX1 9 3195 0.010845987 0.0046316558 1.227561 AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,GUACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBMS3 3 1283 0.004338395 0.0018607779 1.221255 AUAUAG,CUAUAG,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
A1CF 4 1642 0.005422993 0.0023810421 1.187496 AUAAUU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TARDBP 7 2654 0.008676790 0.0038476365 1.173189 GAAUGA,GAAUGG,GUGAAU,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
KHDRBS3 9 3429 0.010845987 0.0049707696 1.125620 AAUAAA,AGAUAA,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FXR2 9 3434 0.010845987 0.0049780156 1.123519 AGACAG,GACAAA,GACAGA,GACGGA,GGACAA,UGACAG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
MSI1 7 2770 0.008676790 0.0040157442 1.111494 AGGAAG,AGGAGG,AGGUGG,UAGGAA,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPC 9 3471 0.010845987 0.0050316361 1.108062 AUUUUU,CUUUUU,GGAUAC,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 12 4554 0.014099783 0.0066011240 1.094889 AAUGAA,AUCAUG,AUGAAA,AUGAAG,AUGAAU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ESRP2 5 2150 0.006507592 0.0031172377 1.061856 GGGAAA,GGGAAG,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
U2AF2 3 1477 0.004338395 0.0021419234 1.018254 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DAZAP1 1 36 0.09090909 0.002423369 5.229338 AGGUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
SRSF6 1 68 0.09090909 0.004519256 4.330267 UUCAGG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SRSF1 1 625 0.09090909 0.041000786 1.148773 UCAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 82 0.007142857 0.0004181782 4.094312 AAGAAG AAGAAG
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG,UGCAUG UGACUG,UGCAUG
HNRNPAB 7 351 0.019047619 0.0017734784 3.424957 AAAGAC,AAGACA,ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 GCAUGU,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
AGO2 7 677 0.019047619 0.0034159613 2.479247 AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
PABPC4 4 462 0.011904762 0.0023327287 2.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
TRA2B 13 1447 0.033333333 0.0072954454 2.191898 AAAGAA,AAGAAG,AAGAAU,AAUAAG,AGAAGG,GAAAGA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SART3 6 777 0.016666667 0.0039197904 2.088117 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU,CAUAUA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGG,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAG,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,AUCAGU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAAAAA,AGUAGG,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAA,AAGAAG,AGAAAG,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM2 4 764 0.011904762 0.0038542926 1.627001 UACAUA,UAUAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPL 8 1419 0.021428571 0.0071543732 1.582638 AAACAA,AAAUAA,AACAAA,AAUAAA,AAUACA,ACAUAA,CACACA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
PPIE 55 9262 0.133333333 0.0466696896 1.514480 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUUAU,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUU,AUUAUA,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUU,UAAUAA,UAAUAU,UAAUUU,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAAAA,UUAUAU,UUAUUU,UUUAAA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
NELFE 5 1059 0.014285714 0.0053405885 1.419503 CUGGCU,GCUAAC,GGCUAA,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUUUAA,CAAAAU,CUAAAA,GAAAAC,UAAAAA,UAAAAC,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM24 4 888 0.011904762 0.0044790407 1.410277 GAGUGA,GAGUGG,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,AAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAAAGA,AAAGAA,AAAGAC,AAGAAA,AAGAAG,AAGACA,ACAAAG,CAAAGA,GAAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AAGAAG,AUAAAG,UAAAGG,UACAGA,UACAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAA,AUCAUA,AUGAAA,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AAGAAG,AGAAGG,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAACA,AAAAUC,AAAUCA,AAUACA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCAUA,UACUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ZFP36 39 9408 0.095238095 0.0474052801 1.006491 AAAAAA,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAUAA,AACAAA,AAGAAA,AAUAAA,AAUAAG,ACAAAG,AGAAAG,AUAAAG,AUAAAU,AUAAGU,AUUUAA,AUUUAU,CAAAGA,CCCUGU,GGAAAG,UAAAGA,UAUUUA,UCUUCC,UUAUUU,UUUAAA,UUUAUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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