ENSG00000125826:+:20:417525:429094

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000125826:+:20:417525:429094 ENSG00000125826 ENST00000382214 + 20 417526 429094 1260 GCUGUGGGUGAGCGUGGAGGAUGCUCAGAUGCACACCGUCACCAUCUGGCUCACAGUGCGCCCUGAUAUGACAGUGGCGUCUCUCAAGGACAUGGUUUUUCUGGACUAUGGCUUCCCACCAGUCUUGCAGCAGUGGGUGAUUGGGCAGCGGCUGGCACGAGACCAGGAGACCCUGCACUCCCAUGGGGUGCGGCAGAAUGGGGACAGUGCCUACCUCUAUCUGCUGUCAGCCCGCAACACCUCCCUCAACCCUCAGGAGCUGCAGCGGGAGCGGCAGCUGCGGAUGCUGGAAGAUCUGGGCUUCAAGGACCUCACGCUGCAGCCGCGGGGCCCUCUGGAGCCAGGCCCCCCAAAGCCCGGGGUCCCCCAGGAACCCGGACGGGGGCAGCCAGAUGCAGUGCCUGAGCCCCCACCGGUGGGCUGGCAGUGCCCCGGGUGCACCUUCAUCAACAAGCCCACGCGGCCUGGCUGUGAGAUGUGCUGCCGGGCGCGCCCCGAGGCCUACCAGGUCCCCGCCUCAUACCAGCCCGACGAGGAGGAGCGAGCGCGCCUGGCGGGCGAGGAGGAGGCGCUGCGUCAGUACCAGCAGCGGAAGCAGCAGCAGCAGGAGGGGAACUACCUGCAGCACGUCCAGCUGGACCAGAGGAGCCUGGUGCUGAACACGGAGCCCGCCGAGUGCCCCGUGUGCUACUCGGUGCUGGCGCCCGGCGAGGCCGUGGUGCUGCGGAGUGCCUGCAGGGCACCAUCCGCAACAGCCAGGAGGCGGAGGUCUCCUGCCCCUUCAUUGACAACACCUACUCGUGCUCGGGCAAGCUGCUGGAGAGGGAGAUCAAGGCGCUCCUGACCCCUGAGGAUUACCAGCGAUUUCUAGACCUGGGCAUCUCCAUUGCUGAAAACCGCAGUGCCUUCAGCUACCAUUGCAAGACCCCAGAUUGCAAGGGAUGGUGCUUCUUUGAGGAUGAUGUCAAUGAGUUCACCUGCCCUGUGUGUUUCCACGUCAACUGCCUGCUCUGCAAGGCCAUCCAUGAGCAGAUGAACUGCAAGGAGUAUCAGGAGGACCUGGCCCUGCGGGCUCAGAACGAUGUGGCUGCCCGGCAGACGACAGAGAUGCUGAAGGUGAUGCUGCAGCAGGGCGAGGCCAUGCGCUGCCCCCAGUGCCAGAUCGUGGUACAGAAGAAGGACGGCUGCGACUGGAUCCGCUGCACCGUCUGCCACACCGAGAUCUGCUGGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGCUGUGGGUGAGCGUGGAGGAUGCUCAGAUGCACACCGUCACCAUCUGGC circ
ENSG00000125826:+:20:417525:429094 ENSG00000125826 ENST00000382214 + 20 417526 429094 22 GGGGCCCUGGGGCUGUGGGUGA bsj
ENSG00000125826:+:20:417525:429094 ENSG00000125826 ENST00000382214 + 20 417326 417535 210 UUGGAGGGGCCUAACUGGUGGGUUCUAAUAAAGGAAGAAGCAUGGGUGGGGCCUACCCCAGACUGGGGUUUGUGUGUGUGUGUGUGUGUGUGUGUGUGCAUGGCCAUGUGCCUGUGUGCAAAUAUGUACAUGUCUGUAGCCGGUGGCUGAGGCUGGACCCCUGGCCAGAGCCCAUGCUGAGCCCCUGCUGUUCUCUGCAGGCUGUGGGUG ie_up
ENSG00000125826:+:20:417525:429094 ENSG00000125826 ENST00000382214 + 20 429085 429294 210 GGGCCCUGGGGUGAGUCUUUGCUCGUGGUGGUGUGGAGAGGGUGCCCUUGUGGGCUUUGCCUUAGAGGAGGGCUGGGAAAACUACAGCCCAUGGGCCAUAUCCAACCCAGCACCUGAAUUUGUACAGCUCCCGAGGUAAGAAUUUUUUUUUUUUUUUUUGAAACGGAGUUUCACUCUUGUUGCCCAGGCUGGAGUGCAAUAGCACAAUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 2 71 0.002380952 0.0001043427 4.512137 GCGCGC GCGCGC
RBM8A 8 611 0.007142857 0.0008869128 3.009637 AUGCGC,CGCGCC,GCGCGC,GUGCGC,UGCGCC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
RBM14 6 478 0.005555556 0.0006941687 3.000573 CGCGCC,CGCGGC,CGCGGG,GCGCGC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
ESRP1 1 156 0.001587302 0.0002275250 2.802479 AGGGAU AGGGAU
RBM25 2 268 0.002380952 0.0003898359 2.610600 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
ZC3H10 10 1053 0.008730159 0.0015274610 2.514872 CAGCGA,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
PPRC1 7 780 0.006349206 0.0011318283 2.487921 CGCGCC,GCGCGC,GGCGCC,GGCGCG,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
IFIH1 6 904 0.005555556 0.0013115296 2.082681 CCGCGG,GCCGCG,GCGGAU,GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
FXR1 2 411 0.002380952 0.0005970720 1.995562 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ACO1 8 1283 0.007142857 0.0018607779 1.940595 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
CNOT4 1 314 0.001587302 0.0004564992 1.797892 GACAGA GACAGA
ANKHD1 1 339 0.001587302 0.0004927293 1.687709 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA3 11 2140 0.009523810 0.0031027457 1.617993 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SNRPB2 4 991 0.003968254 0.0014376103 1.464832 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM42 1 407 0.001587302 0.0005912752 1.424675 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
YTHDC1 24 5576 0.019841270 0.0080822104 1.295683 GAGUGC,GCCUAC,GCCUGC,GGAUGC,GGCUGC,GGGUGC,UCAUAC,UCCUGC,UCGUGC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SAMD4A 16 3992 0.013492063 0.0057866714 1.221305 CGGGCA,CUGGAA,CUGGAC,CUGGCA,CUGGCC,GCGGGA,GCGGGC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
G3BP2 6 1644 0.005555556 0.0023839405 1.220583 AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBMY1A1 1 489 0.001587302 0.0007101099 1.160462 CAAGAC ACAAGA,CAAGAC
MBNL1 48 13372 0.038888889 0.0193802045 1.004774 ACGCUG,AUGCUC,CCGCUG,CCUGCU,CGCUGC,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUG,GCGCUC,GCGCUG,GCUGCG,GCUGCU,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPH2 3 80 0.18181818 0.005305214 5.098942 CUGGGG,GGGCUG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH3 2 61 0.13636364 0.004060781 5.069558 GGGCUG,GGGGCU AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPF 3 90 0.18181818 0.005960178 4.930997 CUGGGG,GGGCUG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 3 90 0.18181818 0.005960178 4.930997 CUGGGG,GGGCUG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
FMR1 1 117 0.09090909 0.007728583 3.556149 GGGCUG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF5 25 669 0.061904762 0.0033756550 4.196811 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 26 776 0.064285714 0.0039147521 4.037505 GGUGUG,GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF2 26 881 0.064285714 0.0044437727 3.854641 GUCUGU,GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 25 888 0.061904762 0.0044790407 3.788789 GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF1 27 1097 0.066666667 0.0055320435 3.591081 GUGUGU,GUUUGU,UGUCUG,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CSTF2 24 1022 0.059523810 0.0051541717 3.529654 GUGUGU,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 24 1034 0.059523810 0.0052146312 3.512830 GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
CPEB4 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
DDX19B 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
EIF4A3 12 691 0.030952381 0.0034864974 3.150200 UUUUUU UUUUUU
CELF6 19 1196 0.047619048 0.0060308343 2.981109 GUGGGG,GUGGUG,GUGUGG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRP14 2 218 0.007142857 0.0011033857 2.694564 CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
KHDRBS2 13 1051 0.033333333 0.0053002821 2.652825 AAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 12 1041 0.030952381 0.0052498992 2.559689 UUUUUU AAAAAA,UUUUUU
U2AF2 12 1071 0.030952381 0.0054010480 2.518739 UUUUUU UUUUCC,UUUUUC,UUUUUU
FUS 19 1711 0.047619048 0.0086255542 2.464850 CGGUGG,GGGUGA,GGGUGC,GGGUGG,UGGUGG,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPU 12 1136 0.030952381 0.0057285369 2.433812 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPCL1 14 1381 0.035714286 0.0069629182 2.358737 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
NOVA1 13 1428 0.033333333 0.0071997179 2.210953 AGCACC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 13 1434 0.033333333 0.0072299476 2.204908 AGCACC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 AAUAAA,AUAAAG,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
LIN28A 6 900 0.016666667 0.0045395002 1.876360 CGGAGU,GGAGGG,UGGAGA,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPC 14 2006 0.035714286 0.0101118501 1.820454 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA,GAAACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
KHDRBS1 13 1945 0.033333333 0.0098045143 1.765448 GAAAAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZRANB2 8 1360 0.021428571 0.0068571141 1.643862 AGGUAA,GGGUGA,GGUGGU,GUGGUG,UAAAGG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGAC,CUGGCC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
FMR1 31 5430 0.076190476 0.0273629585 1.477386 AAGGAA,ACUGGG,ACUGGU,AGGAAG,AGGAGG,CUGAGG,CUGGUG,GACUGG,GCUGAG,GCUGGG,GGCUGA,GGCUGG,GGGCUG,GUGGCU,UGGAGU,UGGCUG,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
HNRNPK 18 3244 0.045238095 0.0163492543 1.468313 ACCCCA,CAACCC,CCAACC,GCCCAG,GCCCCU,UCCCGA,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
SRSF5 8 1578 0.021428571 0.0079554615 1.429518 AAGAAG,AGGAAG,AUAAAG,GAAGAA,GGAAGA,UAAAGG,UACAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SFPQ 37 7087 0.090476190 0.0357114067 1.341153 AAGGAA,ACUGGG,AGAGGA,CUGGAG,CUGGGA,GAAGAA,GAAGCA,GACUGG,GAGAGG,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGG,GGUAAG,GUAAGA,GUGGUG,UGCAGG,UGGAGA,UGGAGG,UGGUGG,UGGUGU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUACAU,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGGAAG,AGGUAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 UCUAAU,UUUGUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHSRP 27 5764 0.066666667 0.0290457477 1.198639 CUGUGU,GUGUGU,UGCAUG,UGUGUG,UUGUGU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAG,AAGAAU,AAGGAA,AGGAAG,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUCU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAAG,AGAGGA,AGGAAG,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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