ENSG00000151466:-:4:128936654:128943188

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000151466:-:4:128936654:128943188 ENSG00000151466 ENST00000506233 - 4 128936655 128943188 390 CUCCUCAGAAGAAAUAUCACGUUACCAAGAAAUGAUUCAGAAACUUCAAAAUGUAUUGGAGUCUGAGAGAGAGAACUGUGGGCUUGUCAGUGAACAAAGGCUAAAACUUCAGCAAGAAAAUAAACAGUUACGGAAAGAGACUGAGAGUUUAAGGAAGAUUGCCCUGGAGGCUCAAAAAAAAGCCAAAGUAAAGAUCAGUACAAUGGAACAUGAAUUUUCAAUAAAGGAACGUGGAUUUGAAGUUCAAUUGAGAGAGAUGGAAGACAGUAAUAGAAAUUCCAUUGUUGAACUGAGGCAUCUCCUAGCGACUCAACAGAAGGCAGCCAAUAGGUGGAAAGAAGAAACGAAGAAACUUACUGAAAGUGCAGAAAUUAGAAUCAAUAAUCUAAACUCCUCAGAAGAAAUAUCACGUUACCAAGAAAUGAUUCAGAAACUUCAAA circ
ENSG00000151466:-:4:128936654:128943188 ENSG00000151466 ENST00000506233 - 4 128936655 128943188 22 AAUAAUCUAAACUCCUCAGAAG bsj
ENSG00000151466:-:4:128936654:128943188 ENSG00000151466 ENST00000506233 - 4 128943179 128943388 210 AAAAUUUGAAUAUAUUUAAGUUGAAUGUAUUUGCCUGGUAUAACAUAACAUUUUGAAACCACAUAGUUUCAGUCUAAAGUGGAAAGAAAUGGCUCAGAAUAAAGCAAACAAAAGUCCAUGUGAUAAAAUGUAGACAGACUUUUAUCUUCUACUAUAGAUCAUUAAGUUUAAGGAUUCUUUUCAUUUCGUUUUUUAAUCAGCUCCUCAGAA ie_up
ENSG00000151466:-:4:128936654:128943188 ENSG00000151466 ENST00000506233 - 4 128936455 128936664 210 AUAAUCUAAAGUAAGUCUACUGUUAGUUGUUUGACAUGUUUUACAGAAGAAAUUCUUUAACCUAUAGUUUAAUGUCCUUGCCAUAAUCUUUUUUAAAAAAUGUAUAAUUCUGGACCUUACCUUUUUCUUCAGUAAAUAUUUAUGAAACUACUAUAAAAAUAUUAUGUCAUAAACCAAAGCAAAUAUUAUAUUUUUUACAAAUUUCAUGCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 3 813 0.010256410 0.0011796520 3.120093 AAAAAA AAAAAA
PABPC5 9 2400 0.025641026 0.0034795387 2.881486 AGAAAA,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC4 4 1251 0.012820513 0.0018144033 2.820887 AAAAAA,AAAAAG AAAAAA,AAAAAG
AGO2 5 1830 0.015384615 0.0026534924 2.535524 AAAAAA,AAAGUG,AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM3 6 2152 0.017948718 0.0031201361 2.524200 AAAACU,AAACGA,GAAACG,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ERI1 1 632 0.005128205 0.0009173461 2.482916 UUCAGA UUCAGA,UUUCAG
HNRNPM 2 999 0.007692308 0.0014492040 2.408156 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF11 1 688 0.005128205 0.0009985015 2.360617 AAGAAG AAGAAG
SRSF4 9 3740 0.025641026 0.0054214720 2.241697 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPN1 2 1222 0.007692308 0.0017723764 2.117731 AGAAGA AAAAGA,AGAAGA
SYNCRIP 3 1634 0.010256410 0.0023694485 2.113903 AAAAAA AAAAAA,UUUUUU
A1CF 3 1642 0.010256410 0.0023810421 2.106861 AUCAGU,GAUCAG,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SNRNP70 2 1237 0.007692308 0.0017941145 2.100145 AAUCAA,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TRA2A 15 6871 0.041025641 0.0099589296 2.042463 AAAGAA,AAGAAA,AAGAAG,AGAAGA,AGGAAG,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
KHDRBS2 3 1858 0.010256410 0.0026940701 1.928667 AAUAAA,AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF7 30 14481 0.079487179 0.0209873716 1.921201 AAAGGA,AAGAAG,AAUGAU,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAUCA,AGGAAG,AUAGAA,CUGAGA,GAAGAA,GAAGGC,GAGACU,GAGAGA,UCAACA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
KHDRBS3 6 3429 0.017948718 0.0049707696 1.852340 AAAUAA,AAUAAA,AUAAAC,AUAAAG,UAAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPU 3 1965 0.010256410 0.0028491350 1.847930 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
SRSF10 27 13860 0.071794872 0.0200874160 1.837589 AAAGAA,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,ACAAAG,AGAGAA,AGAGAC,AGAGAG,GAAAGA,GAGAAC,GAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SNRPB2 1 991 0.005128205 0.0014376103 1.834781 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
TRA2B 13 7329 0.035897436 0.0106226650 1.756735 AAAGAA,AAGAAG,AAGGAA,AGAAGA,AGAAGG,AGGAAG,GAAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SART3 4 2634 0.012820513 0.0038186524 1.747318 AAAAAA,AGAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBMX 8 4925 0.023076923 0.0071387787 1.692702 AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SRSF5 14 8869 0.038461538 0.0128544391 1.581150 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,GAAGAA,GGAAGA,UAAAGG,UACGGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPAB 2 1782 0.007692308 0.0025839306 1.573849 AAGACA,ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ACO1 1 1283 0.005128205 0.0018607779 1.462548 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
MSI1 3 2770 0.010256410 0.0040157442 1.352787 AGGAAG,AGGUGG,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPD 3 2837 0.010256410 0.0041128408 1.318319 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
NONO 1 1498 0.005128205 0.0021723567 1.239193 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM46 5 4554 0.015384615 0.0066011240 1.220705 AAUCAA,AAUGAU,AUCAAU,AUGAAU,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ENOX1 3 3195 0.010256410 0.0046316558 1.146926 AAGACA,AGACAG,AGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZCRB1 1 1605 0.005128205 0.0023274215 1.139721 GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
DAZAP1 6 5964 0.017948718 0.0086445016 1.054026 AAAAAA,AGGAAG,AGUAAA,AGUUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP3 1 21 0.09090909 0.001440922 5.979360 AAACUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAUCA,CACUCA,CAUACA,CAUUCA
IGF2BP2 1 34 0.09090909 0.002292376 5.309509 AAACUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
SRSF2 1 479 0.09090909 0.031438302 1.531901 ACUCCU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAU,CUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAUAAA,AUAAAA,AUAAAC,AUAAAG,GAUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
QKI 5 904 0.014285714 0.0045596534 1.647577 AUCUAA,UAACCU,UAAUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,UAAAUA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,ACAUAA,CAGAAU,GUAAAU,UAAAUA,UAAUGU,UGUAGA,UGUAUA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAAGAA,AAGAAA,AGAAGA,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 AUAAAA,AUUUAA,UAAAAA,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PPIE 55 9262 0.133333333 0.0466696896 1.514480 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AUAAAA,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAUA,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAUAAA,UAUAAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAUAU,UUUAAA,UUUAAU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 AUUUUU,CUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
ELAVL2 55 9826 0.133333333 0.0495112858 1.429208 AAUUUG,AUAUUU,AUUUAA,AUUUAU,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUA,CUUUUU,GUUUUA,GUUUUU,UAAGUU,UAUAUU,UAUUAU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUUU,UGUAUU,UUAAGU,UUAGUU,UUAUAU,UUAUGU,UUCAUU,UUCUUU,UUUAAG,UUUAAU,UUUAUG,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACCACA,CAAACA,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 AUUUAU,UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAACAA,AACAAA,AAUAAA,ACAUAA,ACCACA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ELAVL4 13 2916 0.033333333 0.0146966949 1.181474 AAAAAA,AUCUAA,AUUUAU,UAUUUA,UAUUUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
TIAL1 25 5597 0.061904762 0.0282043531 1.134133 AAAUUU,AUUUUG,AUUUUU,CUUUUA,CUUUUC,CUUUUU,GUUUUU,UAUUUU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36 42 9408 0.102380952 0.0474052801 1.110828 AAAAAA,AAAAAU,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGUA,AACAAA,AAGAAA,AAGCAA,AAGUAA,AAUAAA,ACAAAU,ACCUUU,ACUUUU,AGCAAA,AGUAAA,AUAAAC,AUAAAG,AUUUAA,AUUUAU,CAAACA,CAAAUA,CCUUGC,CCUUUU,GGAAAG,UAAAUA,UAAGGA,UAUUUA,UCUUCU,UCUUUU,UUUAAA,UUUAAU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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