ENSG00000139734:-:13:59774188:59924870

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000139734:-:13:59774188:59924870 ENSG00000139734 ENST00000400324 - 13 59774189 59924870 1245 AGAGAAGAGAAGAGGAAGAUAUUGAAGAGAAGAAAUCGAUUAAGAAAAAAAUUAAAGAACUUAAGUUUUUAGAUUCUAAAAUUGCCCAGAACCUUUCAAUCUUCCUGAGCUCUUUUCGGGUGCCAUAUGAGGAAAUCAGAAUGAUGAUAUUGGAAGUAGAUGAAACACGGUUGGCAGAGUCUAUGAUUCAGAACUUAAUAAAGCAUCUUCCUGAUCAAGAGCAAUUAAAUUCAUUGUCUCAGUUCAAGAGUGAAUAUAGCAACUUAUGUGAACCUGAGCAGUUUGUGGUUGUGAUGAGCAAUGUGAAGAGACUACGGCCACGGCUCAGUGCUAUUCUCUUUAAGCUUCAGUUUGAAGAGCAGGUGAACAACAUCAAACCUGACAUCAUGGCUGUCAGUACUGCCUGCGAAGAGAUAAAGAAGAGCAAAAGCUUUAGCAAGUUGCUGGAACUUGUAUUGCUAAUGGGAAACUACAUGAAUGCUGGCUCCCGGAAUGCUCAAACCUUCGGAUUUAACCUUAGCUCUCUCUGUAAACUAAAGGACACAAAAUCAGCAGAUCAGAAAACAACGCUACUUCAUUUCCUGGUAGAAAUAUGUGAAGAGAAGUACCCUGAUAUACUGAAUUUUGUGGAUGAUUUGGAACCUUUAGACAAAGCUAGUAAAGUCUCUGUAGAAACGCUGGAAAAGAAUUUGAGGCAGAUGGGAAGGCAGCUUCAACAGCUUGAGAAGGAAUUGGAAACCUUUCCCCCUCCUGAGGACUUGCAUGACAAGUUUGUGACAAAGAUGUCCAGAUUUGUUAUCAGUGCAAAAGAACAAUAUGAGACACUUUCGAAGUUACACGAAAACAUGGAAAAGUUAUACCAGAGUAUAAUAGGAUACUAUGCCAUUGAUGUGAAGAAGGUGUCUGUGGAAGACUUUCUUACUGACCUGAAUAACUUCAGAACCACAUUCAUGCAAGCAAUAAAGGAGAAUAUCAAAAAAAGAGAAGCAGAGGAAAAAGAAAAACGUGUCAGAAUAGCUAAAGAAUUAGCAGAGCGAGAAAGACUCGAACGCCAACAAAAGAAAAAGCGUUUAUUAGAAAUGAAGACUGAGGGUGAUGAGACAGGAGUGAUGGAUAAUCUGCUGGAGGCCUUGCAGUCCGGGGCUGCCUUCCGCGACAGAAGAAAAAGGACACCGAUGCCAAAAGAUGUUCGGCAGAGUCUCAGUCCAAUGUCUCAGAGGCCUGUUCUGAAAGUUUGUAACCAUGAGAGAAGAGAAGAGGAAGAUAUUGAAGAGAAGAAAUCGAUUAAGAAAAAA circ
ENSG00000139734:-:13:59774188:59924870 ENSG00000139734 ENST00000400324 - 13 59774189 59924870 22 UUGUAACCAUGAGAGAAGAGAA bsj
ENSG00000139734:-:13:59774188:59924870 ENSG00000139734 ENST00000400324 - 13 59924861 59925070 210 GUUUCUCUGGCAUAAAAGCUCCCAGUUUCUAUCUUCAACAGUUCAGGUCUUGGGAUAUCUAUCGUUUUAUUUGUUUUUAUAACUUUUAUUUAGAAGAGUUACAUCCUUUUUAGCUUAUUUAAUGAUAAAAAGUUCACUUUUUCCACUUUUGUAUUUGAAUGAAUUGCUGCCCCUAACAUGGAUCUAUCUUGGUUUUACAGAGAGAAGAGA ie_up
ENSG00000139734:-:13:59774188:59924870 ENSG00000139734 ENST00000400324 - 13 59773989 59774198 210 UGUAACCAUGGUAAUAAACCGUAUUUAUAAAUUGCACAUUCUUCUUAUCUACUUUUAUCCUAUUGAUCUGUGAUUUUAGUAGACUGCUGUGAAAUUCUCAAGUUCCAAUAUAACUAAAAUAGUAAAAAUGUGUGCAUGUACAUAUUUGCUAUGAGAUUGCGUACUCGUAUUUUUCAUCCUUAUAUUAUUGCCUUGAGGUUGUGUCUUAGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 267 0.002409639 0.0003883867 2.633251 CUCUCU CUCUCU
NXF1 2 286 0.002409639 0.0004159215 2.534433 AACCUG AACCUG
PABPN1 11 1222 0.009638554 0.0017723764 2.443132 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM42 3 407 0.003212851 0.0005912752 2.441953 AACUAA,AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 3 497 0.003212851 0.0007217036 2.154376 AUAUAC,AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPC4 8 1251 0.007228916 0.0018144033 1.994284 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 17 2634 0.014457831 0.0038186524 1.920716 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CNOT4 1 314 0.001606426 0.0004564992 1.815170 GACAGA GACAGA
IGHMBP2 4 813 0.004016064 0.0011796520 1.767421 AAAAAA AAAAAA
RBM3 12 2152 0.010441767 0.0031201361 1.742685 AAAACG,AAACUA,AAGACU,AGACUA,AUACUA,GAAACG,GAAACU,GAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2A 40 6871 0.032931727 0.0099589296 1.725416 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZCRB1 8 1605 0.007228916 0.0023274215 1.635047 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GAUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
YBX2 7 1480 0.006425703 0.0021462711 1.582022 AACAAC,AACAUC,ACAACA,ACAACG,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPAB 8 1782 0.007228916 0.0025839306 1.484212 AAAGAC,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRPB2 4 991 0.004016064 0.0014376103 1.482110 GUAUUG,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC3 5 1234 0.004819277 0.0017897669 1.429045 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
FXR1 1 411 0.001606426 0.0005970720 1.427877 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ERI1 2 632 0.002409639 0.0009173461 1.393279 UUCAGA UUCAGA,UUUCAG
SRSF10 63 13860 0.051405622 0.0200874160 1.355634 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGAG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGGA,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
PABPC5 10 2400 0.008835341 0.0034795387 1.344390 AGAAAA,AGAAAG,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SRSF4 16 3740 0.013654618 0.0054214720 1.332632 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2B 32 7329 0.026506024 0.0106226650 1.319175 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC1 19 4443 0.016064257 0.0064402624 1.318663 AAAAAA,AAAAAC,AGAAAA,CAAACC,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBFOX2 1 452 0.001606426 0.0006564894 1.291011 UGCAUG UGACUG,UGCAUG
HNRNPA0 1 453 0.001606426 0.0006579386 1.287829 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.002409639 0.0009985015 1.270980 AAGAAG AAGAAG
MATR3 2 739 0.002409639 0.0010724109 1.167959 AAUCUU,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRNP70 4 1237 0.004016064 0.0017941145 1.162510 AUCAAG,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
NONO 5 1498 0.004819277 0.0021723567 1.149556 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM46 17 4554 0.014457831 0.0066011240 1.131068 AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAUG,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO2 6 1830 0.005622490 0.0026534924 1.083317 AAAAAA,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
A1CF 5 1642 0.004819277 0.0023810421 1.017224 AGUAUA,AUCAGU,GAUCAG,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM28 2 822 0.002409639 0.0011926949 1.014592 AGUAGA,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF7 2 128 0.13636364 0.008449044 4.012527 GAGAGA,UGAGAG AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF9 2 134 0.13636364 0.008842023 3.946939 AUGAGA,UGAGAG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF10 1 160 0.09090909 0.010544931 3.107875 GAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF2 1 479 0.09090909 0.031438302 1.531901 GAGAGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 CCAUGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AGAAGA AAAAGA,AGAAGA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
ZFP36L2 9 774 0.023809524 0.0039046755 2.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUCUA,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUACAU,UACAUA,UACAUC,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL3 11 1928 0.028571429 0.0097188634 1.555714 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 AAUAAA,AUAAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ELAVL2 53 9826 0.128571429 0.0495112858 1.376741 AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUAU,AUUUUA,AUUUUU,CUUAUA,CUUUUA,CUUUUU,GAUUUU,GUUUUA,GUUUUU,UACUUU,UAUAUU,UAUUAU,UAUUGA,UAUUUA,UAUUUG,UAUUUU,UCUUAU,UGAUUU,UGUAUU,UUAUAU,UUAUUG,UUAUUU,UUGUAU,UUUAAU,UUUAGU,UUUAUA,UUUAUU,UUUCAU,UUUUAG,UUUUAU,UUUUUA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 AUUUAU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AGAAGA,CAACAG,UACAGA,UACAUA,UACAUC,UGCGUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUA,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 44 9262 0.107142857 0.0466696896 1.198978 AAAAAU,AAAAUA,AAUAAA,AAUAUA,AUAAAA,AUAAAU,AUAUAA,AUAUUA,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUU,UAAUAA,UAUAAA,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAUAA,UUAUAU,UUAUUU,UUUAAU,UUUAUA,UUUAUU,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGA,GUUGUG,UGAAUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TIAL1 25 5597 0.061904762 0.0282043531 1.134133 AUUUUA,AUUUUU,CAGUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,AUUUAA,CUAAAA,UAAAAA,UAAAAG,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAA,AAUGAU,AUGAAU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCUAC,CUAACA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AGAAGA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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